HEADER HYDROLASE 16-FEB-06 2G2G TITLE NON STRUCTRAL PROTEIN NS3 WESTNILE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIVIRIN PROTEASE NS3 CATALYTIC SUBUNIT; COMPND 3 CHAIN: D; COMPND 4 FRAGMENT: RESIDUES 1-446; COMPND 5 EC: 3.4.21.91 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WEST NILE VIRUS; SOURCE 3 ORGANISM_COMMON: VIRUSES KEYWDS PROTEIN-RNA COMPLEX, SINGLESTAND HELIX, HYDROLASE EXPDTA THEORETICAL MODEL AUTHOR P.AGILAN,R.PARAMASIVAN,T.MOBEENA,R.RAJENDRAN,K.J.MUTHU, AUTHOR 2 B.K.TYAGI REVDAT 1 02-OCT-07 2G2G 0 JRNL AUTH P.AGILAN,R.PARAMASIVAN,T.MOBEENA,R.RAJENDRAN, JRNL AUTH 2 K.J.MUTHU,B.K.TYAGI JRNL TITL HOMOLOGY MODELING OF NON STRUCTURAL PROTEIN NS3 JRNL TITL 2 WEST NILE VIRUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2G2G COMPLIES WITH FORMAT V. 3.1, 1-AUG-2007 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE RCSB ID CODE IS RCSB036604. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS MODEL WAS PRODUCED FROM A 10 NANOSECOND AMBER/MD REMARK 220 SIMULATION STARTING FROM PDB STRUCTURE ID 2BMF REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMER REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS D 14 -52.93 75.70 REMARK 500 PRO D 23 96.51 -45.80 REMARK 500 LYS D 27 -91.54 -76.70 REMARK 500 ARG D 29 28.96 -77.32 REMARK 500 LYS D 30 -61.21 -175.99 REMARK 500 ARG D 43 54.34 36.60 REMARK 500 ARG D 45 88.14 -64.48 REMARK 500 ALA D 47 116.50 -161.03 REMARK 500 PRO D 51 -71.93 -69.87 REMARK 500 GLN D 71 48.52 -77.00 REMARK 500 VAL D 75 -73.56 67.00 REMARK 500 HIS D 76 -29.84 -174.08 REMARK 500 HIS D 79 127.31 -175.89 REMARK 500 SER D 80 -90.73 -106.68 REMARK 500 ASN D 82 79.55 -151.46 REMARK 500 ASN D 105 109.79 -52.56 REMARK 500 PRO D 147 82.22 -61.71 REMARK 500 PRO D 159 96.68 -62.40 REMARK 500 TYR D 182 106.54 -58.43 REMARK 500 PRO D 191 -74.15 -77.99 REMARK 500 LEU D 213 88.21 -156.27 REMARK 500 SER D 217 -23.08 -141.38 REMARK 500 ASN D 227 -85.84 -80.24 REMARK 500 ASP D 228 97.80 -56.91 REMARK 500 THR D 236 -149.13 -99.89 REMARK 500 ALA D 243 99.70 32.85 REMARK 500 LYS D 246 -136.34 -91.71 REMARK 500 SER D 248 -74.78 175.88 REMARK 500 PRO D 274 99.73 -38.91 REMARK 500 ASN D 312 36.87 -87.54 REMARK 500 TYR D 345 105.09 -54.07 REMARK 500 TYR D 351 47.18 -89.23 REMARK 500 LEU D 365 47.52 -76.13 REMARK 500 ARG D 366 -55.85 -157.52 REMARK 500 ASP D 393 43.70 -81.70 REMARK 500 ILE D 400 93.38 -69.11 REMARK 500 GLU D 402 90.16 -62.04 REMARK 500 ASN D 404 -34.42 85.46 REMARK 500 GLU D 415 95.74 -68.60 REMARK 500 ARG D 420 105.95 -167.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BMF RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DENGU VIRUS DBREF 2G2G D 1 446 UNP P06935 POLG_WNV 1675 2120 SEQRES 1 D 446 PRO ALA PRO ALA GLY PHE GLU PRO GLU MET LEU ARG LYS SEQRES 2 D 446 LYS GLN ILE THR VAL LEU ASP LEU HIS PRO GLY ALA GLY SEQRES 3 D 446 LYS THR ARG LYS ILE LEU PRO GLN ILE ILE LYS GLU ALA SEQRES 4 D 446 ILE ASN LYS ARG LEU ARG THR ALA VAL LEU ALA PRO THR SEQRES 5 D 446 ARG VAL VAL ALA ALA GLU MET SER GLU ALA LEU ARG GLY SEQRES 6 D 446 LEU PRO ILE ARG TYR GLN THR SER ALA VAL HIS ARG GLU SEQRES 7 D 446 HIS SER GLY ASN GLU ILE VAL ASP VAL MET CYS HIS ALA SEQRES 8 D 446 THR LEU THR HIS ARG LEU MET SER PRO HIS ARG VAL PRO SEQRES 9 D 446 ASN TYR ASN LEU PHE ILE MET ASP GLU ALA HIS PHE THR SEQRES 10 D 446 ASP PRO ALA SER ILE ALA ALA ARG GLY TYR ILE ALA THR SEQRES 11 D 446 LYS VAL GLU LEU GLY GLU ALA ALA ALA ILE PHE MET THR SEQRES 12 D 446 ALA THR PRO PRO GLY THR SER ASP PRO PHE PRO GLU SER SEQRES 13 D 446 ASN ALA PRO ILE SER ASP MET GLN THR GLU ILE PRO ASP SEQRES 14 D 446 ARG ALA TRP ASN THR GLY TYR GLU TRP ILE THR GLU TYR SEQRES 15 D 446 VAL GLY LYS THR VAL TRP PHE VAL PRO SER VAL LYS MET SEQRES 16 D 446 GLY ASN GLU ILE ALA LEU CYS LEU GLN ARG ALA GLY LYS SEQRES 17 D 446 LYS VAL ILE GLN LEU ASN ARG LYS SER TYR GLU THR GLU SEQRES 18 D 446 TYR PRO LYS CYS LYS ASN ASP ASP TRP ASP PHE VAL ILE SEQRES 19 D 446 THR THR ASP ILE SER GLU MET GLY ALA ASN PHE LYS ALA SEQRES 20 D 446 SER ARG VAL ILE ASP SER ARG LYS SER VAL LYS PRO THR SEQRES 21 D 446 ILE ILE GLU GLU GLY ASP GLY ARG VAL ILE LEU GLY GLU SEQRES 22 D 446 PRO SER ALA ILE THR ALA ALA SER ALA ALA GLN ARG ARG SEQRES 23 D 446 GLY ARG ILE GLY ARG ASN PRO SER GLN VAL GLY ASP GLU SEQRES 24 D 446 TYR CYS TYR GLY GLY HIS THR ASN GLU ASP ASP SER ASN SEQRES 25 D 446 PHE ALA HIS TRP THR GLU ALA ARG ILE MET LEU ASP ASN SEQRES 26 D 446 ILE ASN MET PRO ASN GLY LEU VAL ALA GLN LEU TYR GLN SEQRES 27 D 446 PRO GLU ARG GLU LYS VAL TYR THR MET ASP GLY GLU TYR SEQRES 28 D 446 ARG LEU ARG GLY GLU GLU ARG LYS ASN PHE LEU GLU PHE SEQRES 29 D 446 LEU ARG THR ALA ASP LEU PRO VAL TRP LEU ALA TYR LYS SEQRES 30 D 446 VAL ALA ALA ALA GLY ILE SER TYR HIS ASP ARG LYS TRP SEQRES 31 D 446 CYS PHE ASP GLY PRO ARG THR ASN THR ILE LEU GLU ASP SEQRES 32 D 446 ASN ASN GLU VAL GLU VAL ILE THR LYS LEU GLY GLU ARG SEQRES 33 D 446 LYS ILE LEU ARG PRO ARG TRP ALA ASP ALA ARG VAL TYR SEQRES 34 D 446 SER ASP HIS GLN ALA LEU LYS SER PHE LYS ASP PHE ALA SEQRES 35 D 446 SER GLY LYS ARG HELIX 1 1 LYS D 30 LYS D 42 1 13 HELIX 2 2 THR D 52 LEU D 63 1 12 HELIX 3 3 HIS D 90 SER D 99 1 10 HELIX 4 4 ASP D 118 GLY D 135 1 18 HELIX 5 5 TYR D 176 TYR D 182 1 7 HELIX 6 6 SER D 192 ARG D 205 1 14 HELIX 7 7 SER D 217 ASN D 227 1 11 HELIX 8 8 ASP D 237 GLU D 240 5 4 HELIX 9 9 THR D 278 GLY D 287 1 10 HELIX 10 10 ALA D 314 ASP D 324 1 11 HELIX 11 11 TYR D 337 ARG D 341 5 5 HELIX 12 12 ARG D 354 ALA D 368 1 15 HELIX 13 13 PRO D 371 ALA D 381 1 11 HELIX 14 14 ARG D 388 PHE D 392 5 5 HELIX 15 15 PRO D 395 THR D 399 5 5 HELIX 16 16 ARG D 427 TYR D 429 5 3 HELIX 17 17 ASP D 431 SER D 443 1 13 SHEET 1 A 6 ILE D 16 ASP D 20 0 SHEET 2 A 6 ALA D 138 THR D 143 1 O THR D 143 N LEU D 19 SHEET 3 A 6 LEU D 108 ASP D 112 1 N PHE D 109 O ILE D 140 SHEET 4 A 6 THR D 46 ALA D 50 1 N LEU D 49 O ILE D 110 SHEET 5 A 6 VAL D 85 CYS D 89 1 O ASP D 86 N VAL D 48 SHEET 6 A 6 ILE D 68 TYR D 70 1 N ARG D 69 O VAL D 85 SHEET 1 B 6 SER D 161 GLN D 164 0 SHEET 2 B 6 GLU D 299 TYR D 302 1 O TYR D 300 N SER D 161 SHEET 3 B 6 ARG D 249 ASP D 252 1 N VAL D 250 O CYS D 301 SHEET 4 B 6 THR D 186 PHE D 189 1 N VAL D 187 O ILE D 251 SHEET 5 B 6 PHE D 232 THR D 235 1 O VAL D 233 N TRP D 188 SHEET 6 B 6 VAL D 210 LEU D 213 1 N ILE D 211 O ILE D 234 SHEET 1 C 3 LYS D 255 ILE D 262 0 SHEET 2 C 3 ARG D 268 ALA D 276 -1 O ARG D 268 N ILE D 262 SHEET 3 C 3 ALA D 424 ASP D 425 1 O ALA D 424 N VAL D 269 SHEET 1 D 2 LEU D 401 GLU D 402 0 SHEET 2 D 2 ASN D 405 GLU D 406 -1 O ASN D 405 N GLU D 402 SHEET 1 E 2 GLU D 408 ILE D 410 0 SHEET 2 E 2 ARG D 416 ILE D 418 -1 O LYS D 417 N VAL D 409 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 106 0 0 17 19 0 0 6 0 0 0 35 END