HEADER UNKNOWN FUNCTION 08-FEB-06 2FYX TITLE CRYSTAL STRUCTURE OF A PUTATIVE TRANSPOSASE (DR_0177) FROM DEINOCOCCUS TITLE 2 RADIODURANS R1 AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPOSASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: R1; SOURCE 5 GENE: 6457846; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MH4A KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 11-OCT-17 2FYX 1 REMARK REVDAT 4 13-JUL-11 2FYX 1 VERSN REVDAT 3 23-MAR-11 2FYX 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2FYX 1 VERSN REVDAT 1 21-FEB-06 2FYX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE TRANSPOSASE(6457846) FROM JRNL TITL 2 DEINOCOCCUS RADIODURANS AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1608 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2256 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.807 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2178 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1978 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2960 ; 1.703 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4581 ; 0.870 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 6.243 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;32.224 ;23.871 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;13.763 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.437 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 323 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2394 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 432 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 496 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2033 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1064 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1318 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.018 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.090 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.273 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1411 ; 2.466 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 536 ; 0.609 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2123 ; 3.378 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 959 ; 5.748 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 835 ; 7.198 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 130 5 REMARK 3 1 B 1 B 130 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 767 ; 0.090 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1196 ; 0.230 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 767 ; 0.470 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1196 ; 0.870 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6694 6.8120 0.7256 REMARK 3 T TENSOR REMARK 3 T11: -0.1512 T22: -0.0935 REMARK 3 T33: -0.1085 T12: 0.0655 REMARK 3 T13: -0.0120 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.8969 L22: 4.9137 REMARK 3 L33: 3.0585 L12: 0.4686 REMARK 3 L13: -0.3495 L23: -2.7952 REMARK 3 S TENSOR REMARK 3 S11: -0.0607 S12: -0.1665 S13: -0.0786 REMARK 3 S21: 0.0811 S22: -0.1282 S23: -0.3951 REMARK 3 S31: 0.1012 S32: 0.3067 S33: 0.1889 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 130 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8539 31.6659 -17.4104 REMARK 3 T TENSOR REMARK 3 T11: -0.1525 T22: -0.0925 REMARK 3 T33: -0.1065 T12: -0.0659 REMARK 3 T13: 0.0139 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.9310 L22: 5.0232 REMARK 3 L33: 3.2118 L12: -0.4989 REMARK 3 L13: 0.4848 L23: -2.8464 REMARK 3 S TENSOR REMARK 3 S11: -0.0647 S12: 0.1757 S13: 0.0698 REMARK 3 S21: -0.0836 S22: -0.1420 S23: -0.4190 REMARK 3 S31: -0.1111 S32: 0.3336 S33: 0.2067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 2. ELECTRON DENSITY IN THE VICINITY OF LEU 102 AND TRP 103 ON REMARK 3 BOTH SUBUNITS IN THE ASYMMETRIC UNIT INDICATES THE PEPTIDE REMARK 3 BOND BETWEEN THESE TWO RESIDUES IS IN THE CIS-CONFIGURATION. REMARK 3 3. ELECTRON DENSITY SURROUNDING RESIDUE 46 IS MODELED AS A REMARK 3 GLYCEROL MOLECULE. REMARK 3 4. ELECTRON DENSITY NEAR ARG 84 ON BOTH SUBUNITS COULD NOT BE REMARK 3 RELIABLY REMARK 3 MODELED AS SIDECHAIN ATOMS. REMARK 4 REMARK 4 2FYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, ASYMMETRICALLY CUT SI(220) REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31895 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.915 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.54700 REMARK 200 R SYM FOR SHELL (I) : 0.54700 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2F4F CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M (NH4)2SO4, 0.2M NACL, 0.1M REMARK 280 CACODYLATE PH 6.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.12000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.06000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLU A 131 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLU B 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CD CE NZ REMARK 470 LYS A 10 CE NZ REMARK 470 LYS A 76 CE NZ REMARK 470 ARG A 84 CD NE CZ NH1 NH2 REMARK 470 GLU A 114 CD OE1 OE2 REMARK 470 HIS A 115 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 121 CG CD OE1 NE2 REMARK 470 GLU A 125 CD OE1 OE2 REMARK 470 LYS B 3 CD CE NZ REMARK 470 LYS B 76 CD CE NZ REMARK 470 ARG B 84 CD NE CZ NH1 NH2 REMARK 470 GLU B 114 OE1 OE2 REMARK 470 ARG B 117 CZ NH1 NH2 REMARK 470 GLN B 121 CG CD OE1 NE2 REMARK 470 GLN B 122 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 21 19.31 57.99 REMARK 500 ASP A 28 -124.29 51.47 REMARK 500 ASN A 101 -44.95 62.93 REMARK 500 ASP B 28 -126.69 52.74 REMARK 500 ASN B 101 -44.67 64.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 135 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 357203 RELATED DB: TARGETDB DBREF 2FYX A 1 131 GB 6457846 AAF09765 1 131 DBREF 2FYX B 1 131 GB 6457846 AAF09765 1 131 SEQADV 2FYX MET A -11 GB 6457846 LEADER SEQUENCE SEQADV 2FYX GLY A -10 GB 6457846 LEADER SEQUENCE SEQADV 2FYX SER A -9 GB 6457846 LEADER SEQUENCE SEQADV 2FYX ASP A -8 GB 6457846 LEADER SEQUENCE SEQADV 2FYX LYS A -7 GB 6457846 LEADER SEQUENCE SEQADV 2FYX ILE A -6 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS A -5 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS A -4 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS A -3 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS A -2 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS A -1 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS A 0 GB 6457846 LEADER SEQUENCE SEQADV 2FYX MET B -11 GB 6457846 LEADER SEQUENCE SEQADV 2FYX GLY B -10 GB 6457846 LEADER SEQUENCE SEQADV 2FYX SER B -9 GB 6457846 LEADER SEQUENCE SEQADV 2FYX ASP B -8 GB 6457846 LEADER SEQUENCE SEQADV 2FYX LYS B -7 GB 6457846 LEADER SEQUENCE SEQADV 2FYX ILE B -6 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS B -5 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS B -4 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS B -3 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS B -2 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS B -1 GB 6457846 LEADER SEQUENCE SEQADV 2FYX HIS B 0 GB 6457846 LEADER SEQUENCE SEQRES 1 A 143 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 143 LYS LYS GLY ARG GLY TYR VAL TYR LYS LEU GLU TYR HIS SEQRES 3 A 143 LEU ILE TRP ALA THR LYS TYR ARG HIS GLN VAL LEU VAL SEQRES 4 A 143 ASP GLU VAL ALA ASP GLY LEU LYS ASP ILE LEU ARG ASP SEQRES 5 A 143 ILE ALA THR GLN ASN GLY LEU GLU LEU VAL ALA LEU GLU SEQRES 6 A 143 VAL MET PRO ASP TYR VAL HIS LEU LEU LEU GLY ALA THR SEQRES 7 A 143 PRO GLN HIS VAL ILE PRO ASP PHE VAL LYS ALA LEU LYS SEQRES 8 A 143 GLY ALA SER ALA ARG ARG MET PHE SER ALA PHE PRO HIS SEQRES 9 A 143 LEU LYS GLN PRO HIS TRP GLY GLY ASN LEU TRP ASN PRO SEQRES 10 A 143 SER TYR CYS VAL LEU THR VAL SER GLU HIS THR ARG ALA SEQRES 11 A 143 GLN ILE GLN GLN TYR ILE GLU ASN GLN HIS ALA ALA GLU SEQRES 1 B 143 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 143 LYS LYS GLY ARG GLY TYR VAL TYR LYS LEU GLU TYR HIS SEQRES 3 B 143 LEU ILE TRP ALA THR LYS TYR ARG HIS GLN VAL LEU VAL SEQRES 4 B 143 ASP GLU VAL ALA ASP GLY LEU LYS ASP ILE LEU ARG ASP SEQRES 5 B 143 ILE ALA THR GLN ASN GLY LEU GLU LEU VAL ALA LEU GLU SEQRES 6 B 143 VAL MET PRO ASP TYR VAL HIS LEU LEU LEU GLY ALA THR SEQRES 7 B 143 PRO GLN HIS VAL ILE PRO ASP PHE VAL LYS ALA LEU LYS SEQRES 8 B 143 GLY ALA SER ALA ARG ARG MET PHE SER ALA PHE PRO HIS SEQRES 9 B 143 LEU LYS GLN PRO HIS TRP GLY GLY ASN LEU TRP ASN PRO SEQRES 10 B 143 SER TYR CYS VAL LEU THR VAL SER GLU HIS THR ARG ALA SEQRES 11 B 143 GLN ILE GLN GLN TYR ILE GLU ASN GLN HIS ALA ALA GLU HET GOL A 132 6 HET GOL A 133 6 HET GOL A 134 6 HET GOL A 135 6 HET GOL B 132 6 HET GOL B 133 6 HET GOL B 134 6 HET GOL B 135 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 8(C3 H8 O3) FORMUL 11 HOH *160(H2 O) HELIX 1 1 LYS A 20 HIS A 23 5 4 HELIX 2 2 VAL A 27 ASN A 45 1 19 HELIX 3 3 VAL A 70 PHE A 90 1 21 HELIX 4 4 PRO A 91 LYS A 94 5 4 HELIX 5 5 GLN A 95 GLY A 99 5 5 HELIX 6 6 HIS A 115 ASN A 126 1 12 HELIX 7 7 LYS B 20 HIS B 23 5 4 HELIX 8 8 VAL B 27 ASN B 45 1 19 HELIX 9 9 VAL B 70 PHE B 90 1 21 HELIX 10 10 PRO B 91 LYS B 94 5 4 HELIX 11 11 GLN B 95 GLY B 99 5 5 HELIX 12 12 HIS B 115 ASN B 126 1 12 SHEET 1 A10 LYS A 2 GLY A 4 0 SHEET 2 A10 TYR A 7 ALA A 18 -1 O TYR A 7 N GLY A 4 SHEET 3 A10 TYR A 58 ALA A 65 -1 O LEU A 61 N LEU A 15 SHEET 4 A10 GLU A 48 VAL A 54 -1 N ALA A 51 O LEU A 62 SHEET 5 A10 TYR A 58 ALA A 65 -1 O LEU A 62 N ALA A 51 SHEET 6 A10 TYR A 7 ALA A 18 -1 N LEU A 15 O LEU A 61 SHEET 7 A10 TYR B 107 LEU B 110 1 O VAL B 109 N VAL A 8 SHEET 8 A10 TYR B 7 ALA B 18 -1 N HIS B 14 O LEU B 110 SHEET 9 A10 TYR B 58 ALA B 65 -1 O LEU B 61 N LEU B 15 SHEET 10 A10 GLU B 48 VAL B 54 -1 N ALA B 51 O LEU B 62 SHEET 1 B 5 LYS A 2 GLY A 4 0 SHEET 2 B 5 TYR A 7 ALA A 18 -1 O TYR A 7 N GLY A 4 SHEET 3 B 5 TYR A 107 LEU A 110 -1 O LEU A 110 N HIS A 14 SHEET 4 B 5 TYR B 7 ALA B 18 1 O VAL B 8 N VAL A 109 SHEET 5 B 5 LYS B 2 GLY B 4 -1 N LYS B 2 O TYR B 9 CISPEP 1 LEU A 102 TRP A 103 0 -1.24 CISPEP 2 LEU B 102 TRP B 103 0 0.79 SITE 1 AC1 5 THR A 43 GLY A 46 LEU A 47 LYS A 94 SITE 2 AC1 5 GOL A 135 SITE 1 AC2 6 THR B 19 LYS B 20 TYR B 21 ASN B 104 SITE 2 AC2 6 GLN B 127 HIS B 128 SITE 1 AC3 5 THR B 43 GLY B 46 LEU B 47 LYS B 94 SITE 2 AC3 5 GOL B 134 SITE 1 AC4 7 THR A 19 LYS A 20 TYR A 21 ASN A 104 SITE 2 AC4 7 PRO A 105 HIS A 128 HOH A 184 SITE 1 AC5 6 LYS A 76 LYS A 79 PRO A 105 TYR A 107 SITE 2 AC5 6 HOH A 150 HOH B 146 SITE 1 AC6 8 LYS A 2 TYR A 9 GLY A 46 GLU A 48 SITE 2 AC6 8 GLY A 64 ALA A 65 GOL A 132 HOH A 175 SITE 1 AC7 7 TYR B 9 GLY B 46 GLU B 48 GLY B 64 SITE 2 AC7 7 ALA B 65 GOL B 133 HOH B 176 SITE 1 AC8 5 LYS B 76 LYS B 79 PRO B 105 HOH B 144 SITE 2 AC8 5 HOH B 182 CRYST1 66.787 66.787 81.180 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014970 0.008640 0.000000 0.00000 SCALE2 0.000000 0.017290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012320 0.00000 MASTER 407 0 8 12 15 0 16 6 0 0 0 22 END