HEADER BIOSYNTHETIC PROTEIN 30-JAN-06 2FVA TITLE STRUCTURE OF 18:0-ACP WITH DOCKED FATTY ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL CARRIER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPINACIA OLERACEA; SOURCE 3 ORGANISM_COMMON: SPINACH; SOURCE 4 ORGANISM_TAXID: 3562; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSACP-2T KEYWDS 4-HELIX BUNDLE, BIOSYNTHETIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.A.ZORNETZER,B.G.FOX,J.L.MARKLEY REVDAT 3 24-FEB-09 2FVA 1 VERSN REVDAT 2 02-MAY-06 2FVA 1 JRNL REVDAT 1 11-APR-06 2FVA 0 JRNL AUTH G.A.ZORNETZER,B.G.FOX,J.L.MARKLEY JRNL TITL SOLUTION STRUCTURES OF SPINACH ACYL CARRIER JRNL TITL 2 PROTEIN WITH DECANOATE AND STEARATE JRNL REF BIOCHEMISTRY V. 45 5217 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16618110 JRNL DOI 10.1021/BI052062D REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.12 REMARK 3 AUTHORS : C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED CYANA FOR INITIAL STRUCTURE REMARK 3 GENERATION. DOCKING OF THE FATTY ACID (WITH RAMACHANDRAN REMARK 3 DATABASE POTENTIALS) WAS PERFORMED IN XPLOR-NIH 2.0.12 REMARK 4 REMARK 4 2FVA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-06. REMARK 100 THE RCSB ID CODE IS RCSB036354. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 287; 287 REMARK 210 PH : 6.1; 6.1 REMARK 210 IONIC STRENGTH : 100 MM NACL; 100 MM NACL REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 2 MM PROTEIN, 10 MM MES PH REMARK 210 6.1, 100 MM NACL, 95% H2O / 5% REMARK 210 D2O; 2 MM PROTEIN, 10 MM MES REMARK 210 PH 6.1, 100 MM NACL, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, F1 REMARK 210 FILTERED NOESY-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, XWINNMR 2.6, VNMR REMARK 210 6.1, NMRPIPE, SPARKY 3.111 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 FOLLOWED BY TORSION ANGLE REMARK 210 DYNAMICS WITH AMBIGUOUS REMARK 210 RESTRAINTS, NOESY RESTRAINTS, REMARK 210 AND RAMACHANDRAN DATABASE REMARK 210 POTENTIALS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH LOWEST ENERGY REMARK 210 WHOSE FATTY ACIDS FORM A REMARK 210 ALIGNED CLUSTER REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 SER A 38 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 18 83.72 55.96 REMARK 500 1 LEU A 19 -168.67 -129.63 REMARK 500 1 ALA A 21 -71.64 -82.48 REMARK 500 1 GLU A 30 151.61 -41.21 REMARK 500 1 ALA A 36 -43.63 66.49 REMARK 500 1 ILE A 54 -162.11 -104.12 REMARK 500 1 ALA A 61 44.87 -104.45 REMARK 500 1 SER A 65 -169.99 -60.28 REMARK 500 1 THR A 66 -170.99 -48.76 REMARK 500 1 LYS A 80 -125.26 -87.11 REMARK 500 1 LYS A 81 -85.48 -152.45 REMARK 500 2 ALA A 18 76.90 79.13 REMARK 500 2 ALA A 21 -72.45 -89.20 REMARK 500 2 GLU A 30 117.81 58.21 REMARK 500 2 LEU A 39 -104.37 56.09 REMARK 500 2 ILE A 54 -166.84 -106.38 REMARK 500 2 GLN A 62 -71.16 -69.55 REMARK 500 2 SER A 65 -170.19 -63.76 REMARK 500 2 THR A 66 -173.56 -43.75 REMARK 500 2 LYS A 80 -32.15 -31.74 REMARK 500 3 ALA A 18 82.38 52.88 REMARK 500 3 PHE A 31 -170.25 -51.53 REMARK 500 3 LYS A 33 73.47 -162.91 REMARK 500 3 ILE A 54 -163.63 -116.27 REMARK 500 3 ALA A 61 51.56 -109.51 REMARK 500 3 SER A 65 -171.22 -57.35 REMARK 500 3 THR A 66 -171.05 -50.08 REMARK 500 3 LYS A 80 -19.28 -38.70 REMARK 500 4 ALA A 21 -70.27 -83.80 REMARK 500 4 GLU A 30 158.84 57.80 REMARK 500 4 ILE A 54 -158.63 -108.75 REMARK 500 4 ALA A 61 48.22 -108.29 REMARK 500 4 SER A 65 -173.00 -67.04 REMARK 500 4 THR A 66 -172.48 -46.32 REMARK 500 4 GLU A 79 -61.88 -103.98 REMARK 500 4 LYS A 80 24.99 29.02 REMARK 500 5 ALA A 21 -77.79 -89.50 REMARK 500 5 GLU A 30 138.15 60.24 REMARK 500 5 SER A 65 -169.40 -62.41 REMARK 500 5 THR A 66 -173.92 -46.97 REMARK 500 5 LYS A 81 81.94 46.06 REMARK 500 6 ALA A 18 52.92 81.06 REMARK 500 6 LEU A 19 -167.52 -113.00 REMARK 500 6 ALA A 21 -79.67 -85.22 REMARK 500 6 GLU A 30 155.36 -41.05 REMARK 500 6 ASP A 40 -32.48 -177.33 REMARK 500 6 ILE A 54 -163.24 -118.02 REMARK 500 6 SER A 65 -169.96 -59.32 REMARK 500 6 THR A 66 -172.90 -50.49 REMARK 500 6 LYS A 80 -20.65 -171.97 REMARK 500 7 ALA A 18 55.91 74.87 REMARK 500 7 LEU A 19 -165.30 -116.03 REMARK 500 7 ALA A 21 -81.72 -80.41 REMARK 500 7 PHE A 31 -85.05 50.42 REMARK 500 7 ILE A 54 -160.81 -100.27 REMARK 500 7 SER A 65 -169.77 -66.84 REMARK 500 7 THR A 66 -171.57 -48.48 REMARK 500 8 ALA A 21 -82.39 -84.54 REMARK 500 8 GLU A 30 110.52 60.54 REMARK 500 8 PHE A 31 -164.11 -56.58 REMARK 500 8 LEU A 34 -132.33 40.83 REMARK 500 8 ILE A 54 -167.31 -115.61 REMARK 500 8 ALA A 61 50.91 -108.63 REMARK 500 8 ASP A 63 58.17 -152.41 REMARK 500 8 SER A 65 -172.40 -64.79 REMARK 500 8 THR A 66 -172.97 -45.37 REMARK 500 8 LYS A 80 -21.74 -171.84 REMARK 500 8 LYS A 81 149.62 -172.87 REMARK 500 9 ALA A 21 -73.91 -86.12 REMARK 500 9 GLU A 30 155.03 57.27 REMARK 500 9 ILE A 54 -163.19 -107.48 REMARK 500 9 SER A 65 -169.28 -58.89 REMARK 500 9 THR A 66 -171.87 -47.80 REMARK 500 9 LYS A 81 53.02 -97.89 REMARK 500 10 ALA A 18 69.26 70.02 REMARK 500 10 LEU A 19 -166.97 -128.53 REMARK 500 10 ALA A 21 -70.76 -87.93 REMARK 500 10 GLU A 30 80.24 55.84 REMARK 500 10 ALA A 61 50.10 -110.75 REMARK 500 10 SER A 65 -172.72 -64.79 REMARK 500 10 THR A 66 -175.34 -45.37 REMARK 500 10 LYS A 80 -64.53 174.93 REMARK 500 10 LYS A 81 157.33 178.79 REMARK 500 11 ALA A 18 61.82 73.32 REMARK 500 11 ALA A 21 -76.53 -83.50 REMARK 500 11 GLU A 30 155.67 57.52 REMARK 500 11 ALA A 36 94.40 38.72 REMARK 500 11 ILE A 54 -159.58 -118.14 REMARK 500 11 ALA A 61 49.25 -109.88 REMARK 500 11 SER A 65 -169.49 -57.73 REMARK 500 11 THR A 66 -173.05 -47.50 REMARK 500 12 ALA A 18 78.99 50.57 REMARK 500 12 GLU A 30 130.40 59.35 REMARK 500 12 SER A 32 97.66 -175.95 REMARK 500 12 ALA A 36 14.76 -158.92 REMARK 500 12 ILE A 54 -165.30 -111.35 REMARK 500 12 SER A 65 -171.19 -62.11 REMARK 500 12 THR A 66 -173.95 -49.45 REMARK 500 12 LYS A 80 -19.64 -152.26 REMARK 500 13 ALA A 18 84.34 65.95 REMARK 500 13 ALA A 21 -72.71 -82.97 REMARK 500 13 GLU A 30 143.25 59.30 REMARK 500 13 ILE A 54 -158.10 -107.26 REMARK 500 13 ALA A 61 47.43 -109.43 REMARK 500 13 SER A 65 -170.32 -57.04 REMARK 500 13 THR A 66 -173.30 -49.08 REMARK 500 13 LYS A 81 84.81 38.18 REMARK 500 14 ALA A 18 39.12 77.91 REMARK 500 14 ALA A 21 -76.72 -92.06 REMARK 500 14 GLU A 30 102.46 -46.42 REMARK 500 14 ASP A 37 22.50 -141.61 REMARK 500 14 ILE A 54 -156.97 -92.20 REMARK 500 14 ALA A 61 43.45 -108.98 REMARK 500 14 ASP A 63 58.06 -142.72 REMARK 500 14 SER A 65 -170.42 -63.85 REMARK 500 14 THR A 66 -170.61 -49.19 REMARK 500 15 ALA A 18 61.49 71.66 REMARK 500 15 LEU A 19 -165.21 -121.22 REMARK 500 15 ALA A 21 -82.29 -83.14 REMARK 500 15 GLU A 30 86.68 57.96 REMARK 500 15 PHE A 31 -13.64 -48.13 REMARK 500 15 LYS A 33 -74.99 -93.99 REMARK 500 15 ALA A 36 12.16 -163.21 REMARK 500 15 LEU A 39 -99.40 -65.66 REMARK 500 15 ASP A 40 -4.12 61.24 REMARK 500 15 ILE A 54 -156.13 -99.90 REMARK 500 15 SER A 65 -172.76 -68.16 REMARK 500 15 THR A 66 -172.52 -45.97 REMARK 500 16 ALA A 18 72.08 76.74 REMARK 500 16 LEU A 19 -169.57 -127.61 REMARK 500 16 ALA A 21 -82.27 -87.71 REMARK 500 16 ILE A 54 -157.27 -114.36 REMARK 500 16 ASP A 63 59.41 -147.47 REMARK 500 16 SER A 65 -170.37 -64.23 REMARK 500 16 THR A 66 -173.79 -46.11 REMARK 500 16 LYS A 80 -4.00 -162.33 REMARK 500 17 ALA A 21 -77.33 -78.25 REMARK 500 17 ASP A 63 54.00 -141.58 REMARK 500 17 SER A 65 -171.75 -69.43 REMARK 500 17 THR A 66 -173.59 -44.02 REMARK 500 18 ALA A 18 49.89 75.69 REMARK 500 18 LEU A 19 -164.61 -117.09 REMARK 500 18 ALA A 21 -81.83 -85.07 REMARK 500 18 PHE A 31 94.82 42.35 REMARK 500 18 ALA A 36 -89.37 39.22 REMARK 500 18 SER A 65 -170.05 -60.40 REMARK 500 18 THR A 66 -172.33 -48.06 REMARK 500 19 ALA A 18 84.72 53.67 REMARK 500 19 ALA A 21 -72.04 -83.67 REMARK 500 19 GLU A 30 142.55 59.40 REMARK 500 19 SER A 38 -45.55 66.91 REMARK 500 19 ILE A 54 -160.31 -108.98 REMARK 500 19 ASP A 63 58.69 -142.21 REMARK 500 19 SER A 65 -170.08 -61.36 REMARK 500 19 THR A 66 -174.09 -49.92 REMARK 500 19 LYS A 80 -25.39 -177.18 REMARK 500 20 ALA A 18 74.92 53.21 REMARK 500 20 ALA A 21 -75.56 -78.36 REMARK 500 20 GLU A 30 161.79 56.94 REMARK 500 20 LEU A 39 34.23 -82.19 REMARK 500 20 ALA A 61 44.15 -104.02 REMARK 500 20 SER A 65 -170.72 -65.38 REMARK 500 20 THR A 66 -172.77 -49.53 REMARK 500 20 LYS A 81 -28.02 -39.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1 STE A 102 REMARK 610 2 STE A 102 REMARK 610 3 STE A 102 REMARK 610 4 STE A 102 REMARK 610 5 STE A 102 REMARK 610 6 STE A 102 REMARK 610 7 STE A 102 REMARK 610 8 STE A 102 REMARK 610 9 STE A 102 REMARK 610 10 STE A 102 REMARK 610 11 STE A 102 REMARK 610 12 STE A 102 REMARK 610 13 STE A 102 REMARK 610 14 STE A 102 REMARK 610 15 STE A 102 REMARK 610 16 STE A 102 REMARK 610 17 STE A 102 REMARK 610 18 STE A 102 REMARK 610 19 STE A 102 REMARK 610 20 STE A 102 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PNS A 101 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AVA RELATED DB: PDB REMARK 900 STRUCTURE ENTRY WITHOUT FATTY ACID REMARK 900 RELATED ID: 6390 RELATED DB: BMRB REMARK 900 NMR ASSIGNMENTS FOR 18:0-ACP REMARK 900 RELATED ID: 2FVE RELATED DB: PDB REMARK 900 RELATED ID: 2FVF RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN HAS 100% MATCH REMARK 999 WITH THE SEQUENCE FROM GB ENTRY CAA31207 REMARK 999 (ACP-I POLYPEPTIDE, SYNTHETIC CONSTRUCT). DBREF 2FVA A 1 82 UNP P07854 ACP1_SPIOL 57 138 SEQRES 1 A 82 ALA LYS LYS GLU THR ILE ASP LYS VAL SER ASP ILE VAL SEQRES 2 A 82 LYS GLU LYS LEU ALA LEU GLY ALA ASP VAL VAL VAL THR SEQRES 3 A 82 ALA ASP SER GLU PHE SER LYS LEU GLY ALA ASP SER LEU SEQRES 4 A 82 ASP THR VAL GLU ILE VAL MET ASN LEU GLU GLU GLU PHE SEQRES 5 A 82 GLY ILE ASN VAL ASP GLU ASP LYS ALA GLN ASP ILE SER SEQRES 6 A 82 THR ILE GLN GLN ALA ALA ASP VAL ILE GLU GLY LEU LEU SEQRES 7 A 82 GLU LYS LYS ALA HET PNS A 101 42 HET STE A 102 54 HETNAM PNS 4'-PHOSPHOPANTETHEINE HETNAM STE STEARIC ACID FORMUL 2 PNS C11 H23 N2 O7 P S FORMUL 3 STE C18 H36 O2 HELIX 1 1 LYS A 2 ALA A 18 1 17 HELIX 2 2 ASP A 40 GLY A 53 1 14 HELIX 3 3 THR A 66 LYS A 80 1 15 LINK CB SER A 38 O23 PNS A 101 1555 1555 1.42 LINK S44 PNS A 101 C1 STE A 102 1555 1555 1.74 SITE 1 AC1 5 LYS A 16 ALA A 36 SER A 38 ASP A 40 SITE 2 AC1 5 STE A 102 SITE 1 AC2 8 GLY A 35 SER A 38 ASP A 40 THR A 41 SITE 2 AC2 8 LEU A 48 VAL A 56 ILE A 74 PNS A 101 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 295 0 2 3 0 0 4 6 0 0 0 7 END