HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-DEC-05 2FB7 TITLE NMR SOLUTION STRUCTURE OF PROTEIN FROM ZEBRA FISH DR.13312 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SM-LIKE PROTEIN, LSM-14_N (RAP55); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: BC055387; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEU-HIS; SOURCE 9 OTHER_DETAILS: WHEAT GERM CELL-FREE, IN VITRO EXPRESSION KEYWDS DR.13312, BC055387, AAH55387, LSM14_N, RAP55, SM-LIKE KEYWDS 2 PROTEIN, STRONGLY BENT FIVE-STRANDED ANTIPARALLEL BETA- KEYWDS 3 SHEET, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 4 INITIATIVE, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, KEYWDS 5 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.C.TYLER,J.SONG,J.L.MARKLEY,CENTER FOR EUKARYOTIC AUTHOR 2 STRUCTURAL GENOMICS (CESG) REVDAT 3 24-FEB-09 2FB7 1 VERSN REVDAT 2 29-APR-08 2FB7 1 SOURCE REVDAT 1 27-DEC-05 2FB7 0 JRNL AUTH R.C.TYLER,J.SONG,J.L.MARKLEY JRNL TITL NMR SOLUTION STRUCTURE OF PROTEIN FROM ZEBRA FISH JRNL TITL 2 DR.13312 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1106 NOE RESTRAINTS (974 UNAMBIGUOUS, 132 AMBIGUOUS), 40 HBOND REMARK 3 RESTRAINTS, AND 172 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. REMARK 4 REMARK 4 2FB7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035674. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 289 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.46 MM PROTEIN, 100 MM NACL, REMARK 210 10 MM BIS-TRIS, 5 MM DTT, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 97.027.12.56., REMARK 210 NMRVIEW 5.0.4, ARIA 1.2, CNS REMARK 210 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, WATER REMARK 210 REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : FEWEST VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL TRIPLE-RESONANCE AND NOESY SPECTRA WERE ACQUIRED REMARK 210 USING A CRYOGENIC PROBE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 LEU A 8 REMARK 465 GLU A 9 REMARK 465 ASP A 10 REMARK 465 PRO A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 4 TYR A 32 CE1 TYR A 32 CZ -0.087 REMARK 500 6 TYR A 17 CE1 TYR A 17 CZ 0.116 REMARK 500 6 TYR A 17 CZ TYR A 17 CE2 -0.107 REMARK 500 7 TYR A 74 CE1 TYR A 74 CZ 0.097 REMARK 500 7 TYR A 74 CZ TYR A 74 CE2 -0.105 REMARK 500 10 TYR A 37 CE1 TYR A 37 CZ -0.097 REMARK 500 10 TYR A 37 CZ TYR A 37 CE2 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 17 -148.81 59.58 REMARK 500 1 ILE A 18 -75.63 94.54 REMARK 500 1 THR A 56 133.24 69.27 REMARK 500 1 GLU A 57 -149.53 -86.60 REMARK 500 1 PRO A 60 44.69 -75.80 REMARK 500 1 THR A 61 75.38 51.72 REMARK 500 1 PRO A 67 86.23 -58.63 REMARK 500 1 TYR A 74 150.57 -49.48 REMARK 500 2 ILE A 18 -77.58 -108.84 REMARK 500 2 GLU A 29 30.65 70.46 REMARK 500 2 THR A 56 -100.44 -143.51 REMARK 500 2 GLU A 57 -91.50 56.52 REMARK 500 2 PRO A 60 84.97 -63.72 REMARK 500 2 ASP A 62 -75.55 176.85 REMARK 500 2 ARG A 63 -62.27 -143.26 REMARK 500 2 ARG A 68 89.05 72.26 REMARK 500 2 ASP A 69 -73.79 -132.77 REMARK 500 2 GLU A 70 -167.98 177.51 REMARK 500 2 CYS A 88 119.16 -178.26 REMARK 500 3 ILE A 18 -39.25 -172.96 REMARK 500 3 TYR A 37 -60.56 -99.44 REMARK 500 3 ARG A 52 127.27 -170.02 REMARK 500 3 SER A 53 79.81 -119.35 REMARK 500 3 PHE A 54 98.23 -176.12 REMARK 500 3 THR A 56 -40.12 62.10 REMARK 500 3 PRO A 60 57.36 -105.93 REMARK 500 3 ARG A 68 86.17 54.13 REMARK 500 3 GLU A 70 171.69 74.99 REMARK 500 3 THR A 71 -89.05 -99.43 REMARK 500 3 PHE A 72 -90.92 -169.14 REMARK 500 3 TYR A 74 177.59 72.59 REMARK 500 3 LYS A 92 86.87 60.42 REMARK 500 4 ILE A 18 -37.02 -176.46 REMARK 500 4 PHE A 54 -91.64 -141.38 REMARK 500 4 PRO A 60 35.93 -91.54 REMARK 500 4 THR A 61 -163.25 46.97 REMARK 500 4 ARG A 63 -55.14 -156.15 REMARK 500 4 ARG A 68 -22.95 77.69 REMARK 500 4 TYR A 74 179.80 175.61 REMARK 500 4 ILE A 94 -58.16 -146.47 REMARK 500 5 TYR A 17 -70.24 -154.71 REMARK 500 5 LYS A 27 -3.41 -57.90 REMARK 500 5 THR A 56 -89.90 -175.35 REMARK 500 5 GLU A 57 -90.84 70.61 REMARK 500 5 PRO A 60 86.57 -67.80 REMARK 500 5 THR A 61 -179.01 -57.16 REMARK 500 5 ARG A 63 83.04 88.15 REMARK 500 5 PRO A 64 -178.45 -58.98 REMARK 500 5 PRO A 67 32.93 -81.69 REMARK 500 5 ARG A 68 106.54 72.42 REMARK 500 5 ASP A 69 -75.05 -85.16 REMARK 500 5 GLU A 70 122.50 176.97 REMARK 500 5 THR A 71 100.07 -161.27 REMARK 500 5 TYR A 74 -168.17 62.08 REMARK 500 5 CYS A 88 -48.21 174.21 REMARK 500 5 GLU A 89 162.21 178.03 REMARK 500 5 LYS A 92 90.75 64.24 REMARK 500 5 ILE A 94 16.40 -144.78 REMARK 500 6 TYR A 17 -91.16 -117.83 REMARK 500 6 ILE A 18 154.99 166.22 REMARK 500 6 LYS A 27 -19.61 -47.52 REMARK 500 6 THR A 56 99.15 63.55 REMARK 500 6 ASP A 58 -63.11 168.46 REMARK 500 6 PRO A 60 42.93 -70.69 REMARK 500 6 THR A 61 112.37 71.74 REMARK 500 6 ARG A 63 86.14 -163.70 REMARK 500 6 PRO A 64 116.51 -25.72 REMARK 500 6 PRO A 67 115.57 -34.15 REMARK 500 6 ARG A 68 107.61 -45.89 REMARK 500 6 ASP A 69 -169.12 -178.50 REMARK 500 6 GLU A 70 176.89 62.86 REMARK 500 6 THR A 71 -167.99 -175.98 REMARK 500 6 GLU A 73 -7.47 -51.37 REMARK 500 6 TYR A 74 -109.90 53.27 REMARK 500 6 ASP A 84 115.27 -173.32 REMARK 500 6 PRO A 93 36.79 -87.03 REMARK 500 6 ILE A 94 -40.42 79.80 REMARK 500 7 LYS A 27 -8.08 -56.38 REMARK 500 7 ARG A 52 94.03 -169.30 REMARK 500 7 PHE A 54 32.84 179.15 REMARK 500 7 THR A 56 116.46 53.07 REMARK 500 7 GLU A 57 -95.76 -95.91 REMARK 500 7 PRO A 60 -13.99 0.60 REMARK 500 7 ASP A 62 -39.68 72.84 REMARK 500 7 ARG A 63 -62.56 -154.48 REMARK 500 7 TYR A 74 -174.69 69.38 REMARK 500 7 ILE A 94 -72.16 -124.61 REMARK 500 8 ARG A 59 -163.57 -123.49 REMARK 500 8 THR A 61 -177.14 45.59 REMARK 500 8 ARG A 63 -51.80 -150.52 REMARK 500 8 PRO A 67 46.62 -81.77 REMARK 500 8 ARG A 68 97.54 56.55 REMARK 500 8 THR A 71 87.29 72.43 REMARK 500 8 ASP A 84 148.01 -174.47 REMARK 500 8 LYS A 92 75.59 66.53 REMARK 500 9 TYR A 17 38.15 91.76 REMARK 500 9 GLU A 29 30.65 72.24 REMARK 500 9 LYS A 50 15.88 83.26 REMARK 500 9 ARG A 52 149.67 178.80 REMARK 500 9 PHE A 54 -31.72 -166.34 REMARK 500 9 THR A 56 106.44 64.92 REMARK 500 9 GLU A 57 -103.60 -112.83 REMARK 500 9 PRO A 60 82.55 -66.02 REMARK 500 9 THR A 61 -174.24 -69.59 REMARK 500 9 ASP A 62 -41.29 -147.82 REMARK 500 9 ARG A 68 -179.44 106.70 REMARK 500 9 ASP A 69 105.65 82.18 REMARK 500 9 GLU A 70 115.25 141.45 REMARK 500 9 TYR A 74 161.69 57.27 REMARK 500 9 LYS A 83 -65.83 -101.21 REMARK 500 9 LYS A 92 87.90 73.43 REMARK 500 10 TYR A 17 12.13 -140.31 REMARK 500 10 SER A 44 44.88 -96.19 REMARK 500 10 THR A 45 -169.41 -38.30 REMARK 500 10 ARG A 52 -174.76 -171.82 REMARK 500 10 PHE A 54 -98.48 -78.72 REMARK 500 10 THR A 56 -68.29 68.12 REMARK 500 10 GLU A 57 -43.59 82.68 REMARK 500 10 ASP A 58 -28.28 -151.70 REMARK 500 10 PRO A 60 66.55 -69.67 REMARK 500 10 THR A 61 -154.12 -113.06 REMARK 500 10 ASP A 62 71.01 30.74 REMARK 500 10 ARG A 63 80.01 66.07 REMARK 500 10 PRO A 64 88.85 -14.93 REMARK 500 10 GLU A 70 165.06 69.95 REMARK 500 10 PHE A 72 -71.85 -120.73 REMARK 500 10 TYR A 74 174.42 66.13 REMARK 500 10 LYS A 83 -62.05 -105.85 REMARK 500 10 LYS A 92 87.64 58.49 REMARK 500 10 ILE A 94 19.76 -143.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.70875 RELATED DB: TARGETDB DBREF 2FB7 A 12 95 UNP Q7SXR4 Q7SXR4_BRARE 2 85 SEQADV 2FB7 GLY A 1 UNP Q7SXR4 CLONING ARTIFACT SEQADV 2FB7 HIS A 2 UNP Q7SXR4 EXPRESSION TAG SEQADV 2FB7 HIS A 3 UNP Q7SXR4 EXPRESSION TAG SEQADV 2FB7 HIS A 4 UNP Q7SXR4 EXPRESSION TAG SEQADV 2FB7 HIS A 5 UNP Q7SXR4 EXPRESSION TAG SEQADV 2FB7 HIS A 6 UNP Q7SXR4 EXPRESSION TAG SEQADV 2FB7 HIS A 7 UNP Q7SXR4 EXPRESSION TAG SEQADV 2FB7 LEU A 8 UNP Q7SXR4 CLONING ARTIFACT SEQADV 2FB7 GLU A 9 UNP Q7SXR4 CLONING ARTIFACT SEQADV 2FB7 ASP A 10 UNP Q7SXR4 CLONING ARTIFACT SEQADV 2FB7 PRO A 11 UNP Q7SXR4 CLONING ARTIFACT SEQRES 1 A 95 GLY HIS HIS HIS HIS HIS HIS LEU GLU ASP PRO SER GLY SEQRES 2 A 95 GLY THR PRO TYR ILE GLY SER LYS ILE SER LEU ILE SER SEQRES 3 A 95 LYS ALA GLU ILE ARG TYR GLU GLY ILE LEU TYR THR ILE SEQRES 4 A 95 ASP THR GLU ASN SER THR VAL ALA LEU ALA LYS VAL ARG SEQRES 5 A 95 SER PHE GLY THR GLU ASP ARG PRO THR ASP ARG PRO ILE SEQRES 6 A 95 ALA PRO ARG ASP GLU THR PHE GLU TYR ILE ILE PHE ARG SEQRES 7 A 95 GLY SER ASP ILE LYS ASP LEU THR VAL CYS GLU PRO PRO SEQRES 8 A 95 LYS PRO ILE MET SHEET 1 A 5 ILE A 75 PHE A 77 0 SHEET 2 A 5 THR A 45 ALA A 49 -1 N VAL A 46 O PHE A 77 SHEET 3 A 5 ILE A 30 ASP A 40 -1 N THR A 38 O ALA A 47 SHEET 4 A 5 SER A 20 SER A 26 -1 N SER A 20 O LEU A 36 SHEET 5 A 5 ILE A 82 VAL A 87 -1 O THR A 86 N SER A 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 254 0 0 0 5 0 0 6 0 0 0 8 END