HEADER PLANT PROTEIN 16-NOV-05 2F2G TITLE X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT3G16990 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEED MATURATION PROTEIN PM36 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN AT3G16990; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT3G16990; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP13 KEYWDS TENA_THI-4 DOMAIN, TENA/THI-4/PQQC FAMILY, AT3G16990, STRUCTURAL KEYWDS 2 GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CESG, CENTER KEYWDS 3 FOREUKARYOTIC STRUCTURAL GENOMICS, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 4 GENOMICS, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.W.WESENBERG,D.W.SMITH,G.N.PHILLIPS JR.,K.A.JOHNSON,E.BITTO, AUTHOR 2 C.A.BINGMAN,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 18-OCT-17 2F2G 1 REMARK REVDAT 4 13-JUL-11 2F2G 1 VERSN REVDAT 3 24-FEB-09 2F2G 1 VERSN REVDAT 2 12-FEB-08 2F2G 1 REMARK REVDAT 1 13-DEC-05 2F2G 0 SPRSDE 13-DEC-05 2F2G 1Q4M JRNL AUTH P.G.BLOMMEL,D.W.SMITH,C.A.BINGMAN,D.H.DYER,I.RAYMENT, JRNL AUTH 2 H.M.HOLDEN,B.G.FOX,G.N.PHILLIPS JR. JRNL TITL CRYSTAL STRUCTURE OF GENE LOCUS AT3G16990 FROM ARABIDOPSIS JRNL TITL 2 THALIANA JRNL REF PROTEINS V. 57 221 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15326608 JRNL DOI 10.1002/PROT.20213 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 28535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1519 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1151 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 48.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3402 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.176 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3545 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4805 ; 1.476 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 4.889 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;33.489 ;23.520 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 586 ;15.387 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;19.870 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2707 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1779 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2513 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 339 ; 0.206 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 111 ; 0.238 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2169 ; 1.694 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3408 ; 2.595 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1603 ; 4.891 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1397 ; 6.667 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 21 4 REMARK 3 1 B 5 B 21 4 REMARK 3 2 A 38 A 149 4 REMARK 3 2 B 38 B 149 4 REMARK 3 3 A 163 A 216 4 REMARK 3 3 B 163 B 216 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1452 ; 0.50 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1452 ; 1.85 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6810 49.7680 49.9820 REMARK 3 T TENSOR REMARK 3 T11: 0.0322 T22: -0.0898 REMARK 3 T33: -0.0323 T12: 0.0112 REMARK 3 T13: -0.0279 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.4512 L22: 0.7902 REMARK 3 L33: 1.3281 L12: 0.0162 REMARK 3 L13: 0.0188 L23: 0.4606 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: -0.0361 S13: -0.0234 REMARK 3 S21: -0.1392 S22: 0.0715 S23: -0.0440 REMARK 3 S31: 0.0080 S32: 0.1270 S33: -0.0481 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 219 REMARK 3 ORIGIN FOR THE GROUP (A): 46.5940 23.0270 50.1270 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: -0.1036 REMARK 3 T33: -0.0830 T12: 0.0010 REMARK 3 T13: -0.0309 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.6774 L22: 1.5435 REMARK 3 L33: 0.3217 L12: -0.6546 REMARK 3 L13: 0.6206 L23: 0.1022 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.1379 S13: -0.0529 REMARK 3 S21: 0.1702 S22: 0.0305 S23: 0.0058 REMARK 3 S31: 0.0217 S32: -0.0920 S33: -0.0548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, SELENIUM C COEFFICIENT FOR STRUCTURE FACTOR REMARK 3 CALCULATION SET TO -9.00, MOLPROBITY USED TO ASSIST IN FINAL REMARK 3 MODEL BUILDING. REMARK 4 REMARK 4 2F2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : DIAMOND (111) DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CYLINDRICAL SI-MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 43.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3030 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.376 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.02, RESOLVE 2.02 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (15 MG/ML PROTEIN, REMARK 280 0.025 M SODIUM CHLORIDE, 0.10 M TRIS PH 7.5) MIXED IN A 1:1 REMARK 280 RATIO WITH THE WELL SOLUTION (0.055 M SODIUM ACETATE PH 4.5, REMARK 280 1.05 M AMMONIUM SULFATE), TEMPERATURE 277 K, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.81050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.35000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.90525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.35000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 215.71575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.35000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.90525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 215.71575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 143.81050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 220 REMARK 465 GLN A 221 REMARK 465 MSE B 1 REMARK 465 GLU B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 151 REMARK 465 GLU B 152 REMARK 465 ASP B 153 REMARK 465 GLY B 154 REMARK 465 ASN B 155 REMARK 465 GLY B 220 REMARK 465 GLN B 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1449 O HOH A 1550 1.87 REMARK 500 OE2 GLU A 88 O HOH A 1612 2.05 REMARK 500 O HOH A 1407 O HOH A 1617 2.18 REMARK 500 O HOH A 1505 O HOH A 1616 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 114 OE2 GLU B 198 5555 2.00 REMARK 500 O HOH A 1556 O HOH B 1496 5555 2.17 REMARK 500 O HOH A 1597 O HOH B 1560 5555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 167 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 218 150.44 -47.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HMH A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HMH B 1301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.12240 RELATED DB: TARGETDB DBREF 2F2G A 1 221 UNP Q9ASY9 PM36_ARATH 1 221 DBREF 2F2G B 1 221 UNP Q9ASY9 PM36_ARATH 1 221 SEQADV 2F2G MSE A 1 UNP Q9ASY9 MET 1 MODIFIED RESIDUE SEQADV 2F2G MSE A 75 UNP Q9ASY9 MET 75 MODIFIED RESIDUE SEQADV 2F2G MSE A 123 UNP Q9ASY9 MET 123 MODIFIED RESIDUE SEQADV 2F2G MSE A 133 UNP Q9ASY9 MET 133 MODIFIED RESIDUE SEQADV 2F2G MSE A 216 UNP Q9ASY9 MET 216 MODIFIED RESIDUE SEQADV 2F2G MSE B 1 UNP Q9ASY9 MET 1 MODIFIED RESIDUE SEQADV 2F2G MSE B 75 UNP Q9ASY9 MET 75 MODIFIED RESIDUE SEQADV 2F2G MSE B 123 UNP Q9ASY9 MET 123 MODIFIED RESIDUE SEQADV 2F2G MSE B 133 UNP Q9ASY9 MET 133 MODIFIED RESIDUE SEQADV 2F2G MSE B 216 UNP Q9ASY9 MET 216 MODIFIED RESIDUE SEQRES 1 A 221 MSE GLU LYS ARG GLY VAL ILE ASP THR TRP ILE ASP LYS SEQRES 2 A 221 HIS ARG SER ILE TYR THR ALA ALA THR ARG HIS ALA PHE SEQRES 3 A 221 VAL VAL SER ILE ARG ASP GLY SER VAL ASP LEU SER SER SEQRES 4 A 221 PHE ARG THR TRP LEU GLY GLN ASP TYR LEU PHE VAL ARG SEQRES 5 A 221 ARG PHE VAL PRO PHE VAL ALA SER VAL LEU ILE ARG ALA SEQRES 6 A 221 CYS LYS ASP SER GLY GLU SER SER ASP MSE GLU VAL VAL SEQRES 7 A 221 LEU GLY GLY ILE ALA SER LEU ASN ASP GLU ILE GLU TRP SEQRES 8 A 221 PHE LYS ARG GLU GLY SER LYS TRP ASP VAL ASP PHE SER SEQRES 9 A 221 THR VAL VAL PRO GLN ARG ALA ASN GLN GLU TYR GLY ARG SEQRES 10 A 221 PHE LEU GLU ASP LEU MSE SER SER GLU VAL LYS TYR PRO SEQRES 11 A 221 VAL ILE MSE THR ALA PHE TRP ALA ILE GLU ALA VAL TYR SEQRES 12 A 221 GLN GLU SER PHE ALA HIS CYS LEU GLU ASP GLY ASN LYS SEQRES 13 A 221 THR PRO VAL GLU LEU THR GLY ALA CYS HIS ARG TRP GLY SEQRES 14 A 221 ASN ASP GLY PHE LYS GLN TYR CYS SER SER VAL LYS ASN SEQRES 15 A 221 ILE ALA GLU ARG CYS LEU GLU ASN ALA SER GLY GLU VAL SEQRES 16 A 221 LEU GLY GLU ALA GLU ASP VAL LEU VAL ARG VAL LEU GLU SEQRES 17 A 221 LEU GLU VAL ALA PHE TRP GLU MSE SER ARG GLY GLY GLN SEQRES 1 B 221 MSE GLU LYS ARG GLY VAL ILE ASP THR TRP ILE ASP LYS SEQRES 2 B 221 HIS ARG SER ILE TYR THR ALA ALA THR ARG HIS ALA PHE SEQRES 3 B 221 VAL VAL SER ILE ARG ASP GLY SER VAL ASP LEU SER SER SEQRES 4 B 221 PHE ARG THR TRP LEU GLY GLN ASP TYR LEU PHE VAL ARG SEQRES 5 B 221 ARG PHE VAL PRO PHE VAL ALA SER VAL LEU ILE ARG ALA SEQRES 6 B 221 CYS LYS ASP SER GLY GLU SER SER ASP MSE GLU VAL VAL SEQRES 7 B 221 LEU GLY GLY ILE ALA SER LEU ASN ASP GLU ILE GLU TRP SEQRES 8 B 221 PHE LYS ARG GLU GLY SER LYS TRP ASP VAL ASP PHE SER SEQRES 9 B 221 THR VAL VAL PRO GLN ARG ALA ASN GLN GLU TYR GLY ARG SEQRES 10 B 221 PHE LEU GLU ASP LEU MSE SER SER GLU VAL LYS TYR PRO SEQRES 11 B 221 VAL ILE MSE THR ALA PHE TRP ALA ILE GLU ALA VAL TYR SEQRES 12 B 221 GLN GLU SER PHE ALA HIS CYS LEU GLU ASP GLY ASN LYS SEQRES 13 B 221 THR PRO VAL GLU LEU THR GLY ALA CYS HIS ARG TRP GLY SEQRES 14 B 221 ASN ASP GLY PHE LYS GLN TYR CYS SER SER VAL LYS ASN SEQRES 15 B 221 ILE ALA GLU ARG CYS LEU GLU ASN ALA SER GLY GLU VAL SEQRES 16 B 221 LEU GLY GLU ALA GLU ASP VAL LEU VAL ARG VAL LEU GLU SEQRES 17 B 221 LEU GLU VAL ALA PHE TRP GLU MSE SER ARG GLY GLY GLN MODRES 2F2G MSE A 75 MET SELENOMETHIONINE MODRES 2F2G MSE A 123 MET SELENOMETHIONINE MODRES 2F2G MSE A 133 MET SELENOMETHIONINE MODRES 2F2G MSE A 216 MET SELENOMETHIONINE MODRES 2F2G MSE B 75 MET SELENOMETHIONINE MODRES 2F2G MSE B 123 MET SELENOMETHIONINE MODRES 2F2G MSE B 133 MET SELENOMETHIONINE MODRES 2F2G MSE B 216 MET SELENOMETHIONINE HET MSE A 75 8 HET MSE A 123 8 HET MSE A 133 8 HET MSE A 216 8 HET MSE B 75 8 HET MSE B 123 8 HET MSE B 133 8 HET MSE B 216 8 HET SO4 A1403 5 HET HMH A1300 10 HET SO4 B1401 5 HET SO4 B1402 5 HET SO4 B1404 5 HET HMH B1301 10 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM HMH 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 HMH 2(C6 H9 N3 O) FORMUL 9 HOH *427(H2 O) HELIX 1 1 GLY A 5 HIS A 14 1 10 HELIX 2 2 HIS A 14 THR A 22 1 9 HELIX 3 3 LEU A 37 ASP A 68 1 32 HELIX 4 4 SER A 73 TRP A 99 1 27 HELIX 5 5 ASP A 102 VAL A 106 5 5 HELIX 6 6 GLN A 109 LEU A 122 1 14 HELIX 7 7 LYS A 128 PHE A 147 1 20 HELIX 8 8 HIS A 149 LYS A 156 1 8 HELIX 9 9 THR A 162 GLY A 169 1 8 HELIX 10 10 ASN A 170 ASN A 190 1 21 HELIX 11 11 SER A 192 MSE A 216 1 25 HELIX 12 12 GLY B 5 HIS B 14 1 10 HELIX 13 13 HIS B 14 ARG B 23 1 10 HELIX 14 14 HIS B 24 ASP B 32 1 9 HELIX 15 15 ASP B 36 ASP B 68 1 33 HELIX 16 16 SER B 73 TRP B 99 1 27 HELIX 17 17 ASP B 102 VAL B 106 5 5 HELIX 18 18 GLN B 109 SER B 124 1 16 HELIX 19 19 LYS B 128 ALA B 148 1 21 HELIX 20 20 LEU B 161 ASN B 170 1 10 HELIX 21 21 ASN B 170 ASN B 190 1 21 HELIX 22 22 SER B 192 GLY B 219 1 28 SHEET 1 A 2 SER A 29 ARG A 31 0 SHEET 2 A 2 SER A 34 ASP A 36 -1 O ASP A 36 N SER A 29 SSBOND 1 CYS A 150 CYS A 165 1555 1555 2.08 SSBOND 2 CYS B 150 CYS B 165 1555 1555 2.05 LINK C ASP A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N GLU A 76 1555 1555 1.34 LINK C LEU A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N SER A 124 1555 1555 1.32 LINK C ILE A 132 N MSE A 133 1555 1555 1.34 LINK C MSE A 133 N THR A 134 1555 1555 1.33 LINK C GLU A 215 N MSE A 216 1555 1555 1.34 LINK C MSE A 216 N SER A 217 1555 1555 1.34 LINK C ASP B 74 N MSE B 75 1555 1555 1.34 LINK C MSE B 75 N GLU B 76 1555 1555 1.34 LINK C LEU B 122 N MSE B 123 1555 1555 1.33 LINK C MSE B 123 N SER B 124 1555 1555 1.33 LINK C ILE B 132 N MSE B 133 1555 1555 1.34 LINK C MSE B 133 N THR B 134 1555 1555 1.34 LINK C GLU B 215 N MSE B 216 1555 1555 1.34 LINK C MSE B 216 N SER B 217 1555 1555 1.33 SITE 1 AC1 2 ARG A 23 HIS A 24 SITE 1 AC2 8 ARG B 64 ASP B 68 ARG B 110 VAL B 127 SITE 2 AC2 8 LYS B 128 TYR B 129 HOH B1466 HOH B1505 SITE 1 AC3 7 ARG A 117 GLU A 120 HOH A1597 PHE B 118 SITE 2 AC3 7 ASP B 121 ARG B 205 HOH B1506 SITE 1 AC4 6 ARG A 110 VAL B 107 SER B 192 VAL B 195 SITE 2 AC4 6 HOH B1430 HOH B1563 SITE 1 AC5 6 ASP A 47 PHE A 50 ILE A 139 TYR A 143 SITE 2 AC5 6 GLU A 210 HOH A1437 SITE 1 AC6 9 ASP B 47 PHE B 50 VAL B 51 ILE B 139 SITE 2 AC6 9 GLU B 140 TYR B 143 GLU B 210 PHE B 213 SITE 3 AC6 9 HOH B1481 CRYST1 62.700 62.700 287.621 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003477 0.00000 MASTER 436 0 14 22 2 0 12 6 0 0 0 34 END