HEADER RNA 30-OCT-05 2EUY TITLE SOLUTION STRUCTURE OF THE INTERNAL LOOP OF HUMAN U65 H/ACA TITLE 2 SNORNA 3' HAIRPIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: U65 BOX H/ACA SNORNA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA HAIRPIN CONTAINING THE 3' INTERNAL-LOOP COMPND 5 (PSEUDOURIDYLATION POCKET); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS HARIPIN, INTERNAL-LOOP EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR J.FEIGON,M.KHANNA,H.WU,C.JOHANSSON,M.CAIZERGUES-FERRER REVDAT 2 24-FEB-09 2EUY 1 VERSN REVDAT 1 03-JAN-06 2EUY 0 JRNL AUTH M.KHANNA,H.WU,C.JOHANSSON,M.CAIZERGUES-FERRER, JRNL AUTH 2 J.FEIGON JRNL TITL STRUCTURAL STUDY OF THE H/ACA SNORNP COMPONENTS JRNL TITL 2 NOP10P AND THE 3' HAIRPIN OF U65 SNORNA. JRNL REF RNA V. 12 40 2006 JRNL REFN ISSN 1355-8382 JRNL PMID 16373493 JRNL DOI 10.1261/RNA.2221606 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS REFINED AGAINST 11 REMARK 3 RESIDUAL DIPOLAR COUPLING RSTRAINTS REMARK 4 REMARK 4 2EUY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-05. REMARK 100 THE RCSB ID CODE IS RCSB035122. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 10MM SODIUM PHOSPHATE BUFFER REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : UNLABELED; UNLABELED; G,A,U, REMARK 210 OR C-SELECTIVELY 13C,15N-LABLED REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 3D HCCH- REMARK 210 TOCSY, 3D HCCH-COSY, 13C- REMARK 210 FILTERED/EDITED 2D NOESYS REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, FELIX 2000 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 7 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 8 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 8 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 A A 10 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 11 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 14 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 15 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 15 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 1 G A 19 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 19 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 22 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 22 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 24 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 24 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 27 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 27 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 28 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 A A 29 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 A A 30 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 31 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 G A 31 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 32 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 32 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 7 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 8 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 8 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 A A 10 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 A A 11 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 A A 14 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 15 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 15 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 2 G A 19 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 19 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 22 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 22 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 24 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 451 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2EUY A 1 34 PDB 2EUY 2EUY 1 34 SEQRES 1 A 34 G G C C U U A G G A A A C SEQRES 2 A 34 A G U U C G C U G U G C C SEQRES 3 A 34 G A A A G G U C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 121 0 0 0 0 0 0 6 0 0 0 3 END