HEADER TOXIN 25-OCT-05 2ERQ TITLE CRYSTAL STRUCTURE OF VASCULAR APOPTOSIS-INDUCING PROTEIN-1(TETRAGONAL TITLE 2 CRYSTAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VASCULAR APOPTOSIS-INDUCING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 184-610; COMPND 5 SYNONYM: VAP-1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CROTALUS ATROX; SOURCE 3 ORGANISM_COMMON: WESTERN DIAMONDBACK RATTLESNAKE; SOURCE 4 ORGANISM_TAXID: 8730; SOURCE 5 SECRETION: VENOM KEYWDS METALLOPROTEASE, DISINTEGRIN, CALCIUM-BINDING, ADAM, SVMP, MDC KEYWDS 2 PROTEIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR S.TAKEDA,T.IGARASHI,S.ARAKI REVDAT 4 29-JUL-20 2ERQ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 2ERQ 1 VERSN REVDAT 2 24-FEB-09 2ERQ 1 VERSN REVDAT 1 20-JUN-06 2ERQ 0 JRNL AUTH S.TAKEDA,T.IGARASHI,H.MORI,S.ARAKI JRNL TITL CRYSTAL STRUCTURES OF VAP1 REVEAL ADAMS' MDC DOMAIN JRNL TITL 2 ARCHITECTURE AND ITS UNIQUE C-SHAPED SCAFFOLD JRNL REF EMBO J. V. 25 2388 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16688218 JRNL DOI 10.1038/SJ.EMBOJ.7601131 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.IGARASHI,Y.OISHI,S.ARAKI,H.MORI,S.TAKEDA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY CRYSTALLOGRAPHIC REMARK 1 TITL 2 ANALYSIS OF TWO VASCULAR APOPTOSIS-INDUCING PROTEINS (VAPS) REMARK 1 TITL 3 FROM CROTALUS ATROX VENOM REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1920 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 175 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6511 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.390 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.905 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ERQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45PX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38868 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2ERO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG8000, 100MM SODIUM/CACODYLATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.41000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.97000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.20500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.97000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 183.61500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.97000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.97000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.20500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.97000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.97000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 183.61500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 122.41000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS ONE DISULFIDE-LINKED HOMODIMER REMARK 300 MOLECULE THAT IS THE BIOLOGICAL UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -93.94000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 184 REMARK 465 PRO A 609 REMARK 465 TYR A 610 REMARK 465 GLN B 184 REMARK 465 SER B 185 REMARK 465 ASN B 186 REMARK 465 TYR B 610 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN B 564 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 215 42.09 -97.76 REMARK 500 CYS A 310 -15.92 76.81 REMARK 500 ALA A 367 124.13 -34.65 REMARK 500 MET A 387 60.32 37.26 REMARK 500 ARG A 423 3.99 -68.96 REMARK 500 ALA A 432 -4.27 -48.90 REMARK 500 PHE A 485 -168.33 -122.94 REMARK 500 ASN A 488 108.49 -59.95 REMARK 500 ASN A 501 52.43 35.92 REMARK 500 PHE A 527 -8.20 -59.15 REMARK 500 ASN A 534 -166.40 -57.79 REMARK 500 GLU A 542 -86.97 -65.98 REMARK 500 GLN A 543 -72.53 -86.20 REMARK 500 ASN A 544 -1.27 -143.73 REMARK 500 PRO A 551 -34.60 -30.71 REMARK 500 ALA A 593 -150.67 -122.87 REMARK 500 ASP A 594 -92.40 -73.97 REMARK 500 ARG A 595 55.41 -93.24 REMARK 500 ASN A 600 83.67 -159.66 REMARK 500 THR A 607 86.44 -64.04 REMARK 500 TYR B 215 37.84 -92.20 REMARK 500 LYS B 283 107.45 -173.56 REMARK 500 CYS B 310 -29.92 69.91 REMARK 500 ASP B 348 -95.86 -2.59 REMARK 500 MET B 387 60.22 34.97 REMARK 500 PRO B 388 109.83 -58.19 REMARK 500 ALA B 457 107.05 -51.71 REMARK 500 ASN B 534 -87.20 -68.53 REMARK 500 HIS B 535 -57.77 -127.32 REMARK 500 GLU B 542 -70.71 -60.67 REMARK 500 ASN B 544 -6.38 -140.51 REMARK 500 PRO B 551 -34.78 -33.78 REMARK 500 PRO B 563 94.07 -58.36 REMARK 500 ASN B 564 -4.46 -37.33 REMARK 500 ASN B 568 98.25 -12.52 REMARK 500 ALA B 593 169.58 171.05 REMARK 500 SER B 599 -70.98 -108.63 REMARK 500 THR B 607 35.30 -86.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 536 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 335 NE2 REMARK 620 2 HIS A 339 NE2 90.7 REMARK 620 3 HIS A 345 NE2 89.5 98.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 405 O REMARK 620 2 ASN A 408 OD1 85.2 REMARK 620 3 PHE A 410 O 163.1 78.0 REMARK 620 4 GLU A 412 OE1 84.4 104.8 100.0 REMARK 620 5 GLU A 415 OE1 126.1 146.3 70.3 91.8 REMARK 620 6 GLU A 415 OE2 75.9 156.0 120.2 88.2 50.2 REMARK 620 7 ASP A 418 OD1 80.1 76.7 95.6 164.3 95.1 85.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 469 OD2 REMARK 620 2 MET A 470 O 93.3 REMARK 620 3 ASP A 472 OD1 165.9 78.5 REMARK 620 4 ASP A 472 OD2 144.7 97.1 48.9 REMARK 620 5 ASP A 483 OD1 95.3 164.5 95.4 68.7 REMARK 620 6 ARG A 484 O 86.8 91.9 81.9 126.2 101.5 REMARK 620 7 HOH A 788 O 82.8 79.9 106.8 66.1 88.4 166.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 335 NE2 REMARK 620 2 HIS B 339 NE2 92.5 REMARK 620 3 HIS B 345 NE2 97.3 100.6 REMARK 620 4 HOH B 775 O 160.4 99.9 95.3 REMARK 620 5 HOH B 776 O 98.0 118.6 137.0 62.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 405 O REMARK 620 2 ASN B 408 OD1 78.4 REMARK 620 3 PHE B 410 O 160.0 82.3 REMARK 620 4 GLU B 412 OE1 87.7 95.9 88.7 REMARK 620 5 GLU B 415 OE1 125.3 156.2 73.8 84.1 REMARK 620 6 GLU B 415 OE2 76.5 153.6 123.3 91.5 49.9 REMARK 620 7 ASP B 418 OD1 88.9 76.4 92.1 172.1 103.7 94.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 469 OD2 REMARK 620 2 MET B 470 O 91.6 REMARK 620 3 ASP B 472 OD1 169.0 77.7 REMARK 620 4 ASP B 472 OD2 141.9 97.2 44.0 REMARK 620 5 ASP B 483 OD1 89.5 165.6 101.5 73.5 REMARK 620 6 ARG B 484 O 91.2 89.2 86.3 125.8 105.1 REMARK 620 7 ARG B 484 N 133.8 115.2 51.7 74.4 73.5 54.8 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ERO RELATED DB: PDB REMARK 900 THE SAME PROTEIN(ORTHORHOMBIC CRYSTAL FORM) REMARK 900 RELATED ID: 2ERP RELATED DB: PDB REMARK 900 THE SAME PROTEIN(INHIBITOR-BOUND FORM) DBREF 2ERQ A 184 610 GB 11320556 BAB18307 184 610 DBREF 2ERQ B 184 610 GB 11320556 BAB18307 184 610 SEQRES 1 A 427 GLN SER ASN LEU THR PRO GLU GLN GLN ARG TYR LEU ASN SEQRES 2 A 427 ALA LYS LYS TYR VAL LYS LEU PHE LEU VAL ALA ASP TYR SEQRES 3 A 427 ILE MET TYR LEU LYS TYR GLY ARG ASN LEU THR ALA VAL SEQRES 4 A 427 ARG THR ARG MET TYR ASP ILE VAL ASN VAL ILE THR PRO SEQRES 5 A 427 ILE TYR HIS ARG MET ASN ILE HIS VAL ALA LEU VAL GLY SEQRES 6 A 427 LEU GLU ILE TRP SER ASN THR ASP LYS ILE ILE VAL GLN SEQRES 7 A 427 SER SER ALA ASP VAL THR LEU ASP LEU PHE ALA LYS TRP SEQRES 8 A 427 ARG ALA THR ASP LEU LEU SER ARG LYS SER HIS ASP ASN SEQRES 9 A 427 ALA GLN LEU LEU THR GLY ILE ASN PHE ASN GLY PRO THR SEQRES 10 A 427 ALA GLY LEU GLY TYR LEU GLY GLY ILE CYS ASN THR MET SEQRES 11 A 427 TYR SER ALA GLY ILE VAL GLN ASP HIS SER LYS ILE HIS SEQRES 12 A 427 HIS LEU VAL ALA ILE ALA MET ALA HIS GLU MET GLY HIS SEQRES 13 A 427 ASN LEU GLY MET ASP HIS ASP LYS ASP THR CYS THR CYS SEQRES 14 A 427 GLY THR ARG PRO CYS VAL MET ALA GLY ALA LEU SER CYS SEQRES 15 A 427 GLU ALA SER PHE LEU PHE SER ASP CYS SER GLN LYS ASP SEQRES 16 A 427 HIS ARG GLU PHE LEU ILE LYS ASN MET PRO GLN CYS ILE SEQRES 17 A 427 LEU LYS LYS PRO LEU LYS THR ASP VAL VAL SER PRO ALA SEQRES 18 A 427 VAL CYS GLY ASN TYR PHE VAL GLU VAL GLY GLU GLU CYS SEQRES 19 A 427 ASP CYS GLY SER PRO ARG THR CYS ARG ASP PRO CYS CYS SEQRES 20 A 427 ASP ALA THR THR CYS LYS LEU ARG GLN GLY ALA GLN CYS SEQRES 21 A 427 ALA GLU GLY LEU CYS CYS ASP GLN CYS ARG PHE LYS GLY SEQRES 22 A 427 ALA GLY THR GLU CYS ARG ALA ALA LYS ASP GLU CYS ASP SEQRES 23 A 427 MET ALA ASP VAL CYS THR GLY ARG SER ALA GLU CYS THR SEQRES 24 A 427 ASP ARG PHE GLN ARG ASN GLY GLN PRO CYS LYS ASN ASN SEQRES 25 A 427 ASN GLY TYR CYS TYR ASN GLY LYS CYS PRO ILE MET ALA SEQRES 26 A 427 ASP GLN CYS ILE ALA LEU PHE GLY PRO GLY ALA THR VAL SEQRES 27 A 427 SER GLN ASP ALA CYS PHE GLN PHE ASN ARG GLU GLY ASN SEQRES 28 A 427 HIS TYR GLY TYR CYS ARG LYS GLU GLN ASN THR LYS ILE SEQRES 29 A 427 ALA CYS GLU PRO GLN ASP VAL LYS CYS GLY ARG LEU TYR SEQRES 30 A 427 CYS PHE PRO ASN SER PRO GLU ASN LYS ASN PRO CYS ASN SEQRES 31 A 427 ILE TYR TYR SER PRO ASN ASP GLU ASP LYS GLY MET VAL SEQRES 32 A 427 LEU PRO GLY THR LYS CYS ALA ASP ARG LYS ALA CYS SER SEQRES 33 A 427 ASN GLY GLN CYS VAL ASP VAL THR THR PRO TYR SEQRES 1 B 427 GLN SER ASN LEU THR PRO GLU GLN GLN ARG TYR LEU ASN SEQRES 2 B 427 ALA LYS LYS TYR VAL LYS LEU PHE LEU VAL ALA ASP TYR SEQRES 3 B 427 ILE MET TYR LEU LYS TYR GLY ARG ASN LEU THR ALA VAL SEQRES 4 B 427 ARG THR ARG MET TYR ASP ILE VAL ASN VAL ILE THR PRO SEQRES 5 B 427 ILE TYR HIS ARG MET ASN ILE HIS VAL ALA LEU VAL GLY SEQRES 6 B 427 LEU GLU ILE TRP SER ASN THR ASP LYS ILE ILE VAL GLN SEQRES 7 B 427 SER SER ALA ASP VAL THR LEU ASP LEU PHE ALA LYS TRP SEQRES 8 B 427 ARG ALA THR ASP LEU LEU SER ARG LYS SER HIS ASP ASN SEQRES 9 B 427 ALA GLN LEU LEU THR GLY ILE ASN PHE ASN GLY PRO THR SEQRES 10 B 427 ALA GLY LEU GLY TYR LEU GLY GLY ILE CYS ASN THR MET SEQRES 11 B 427 TYR SER ALA GLY ILE VAL GLN ASP HIS SER LYS ILE HIS SEQRES 12 B 427 HIS LEU VAL ALA ILE ALA MET ALA HIS GLU MET GLY HIS SEQRES 13 B 427 ASN LEU GLY MET ASP HIS ASP LYS ASP THR CYS THR CYS SEQRES 14 B 427 GLY THR ARG PRO CYS VAL MET ALA GLY ALA LEU SER CYS SEQRES 15 B 427 GLU ALA SER PHE LEU PHE SER ASP CYS SER GLN LYS ASP SEQRES 16 B 427 HIS ARG GLU PHE LEU ILE LYS ASN MET PRO GLN CYS ILE SEQRES 17 B 427 LEU LYS LYS PRO LEU LYS THR ASP VAL VAL SER PRO ALA SEQRES 18 B 427 VAL CYS GLY ASN TYR PHE VAL GLU VAL GLY GLU GLU CYS SEQRES 19 B 427 ASP CYS GLY SER PRO ARG THR CYS ARG ASP PRO CYS CYS SEQRES 20 B 427 ASP ALA THR THR CYS LYS LEU ARG GLN GLY ALA GLN CYS SEQRES 21 B 427 ALA GLU GLY LEU CYS CYS ASP GLN CYS ARG PHE LYS GLY SEQRES 22 B 427 ALA GLY THR GLU CYS ARG ALA ALA LYS ASP GLU CYS ASP SEQRES 23 B 427 MET ALA ASP VAL CYS THR GLY ARG SER ALA GLU CYS THR SEQRES 24 B 427 ASP ARG PHE GLN ARG ASN GLY GLN PRO CYS LYS ASN ASN SEQRES 25 B 427 ASN GLY TYR CYS TYR ASN GLY LYS CYS PRO ILE MET ALA SEQRES 26 B 427 ASP GLN CYS ILE ALA LEU PHE GLY PRO GLY ALA THR VAL SEQRES 27 B 427 SER GLN ASP ALA CYS PHE GLN PHE ASN ARG GLU GLY ASN SEQRES 28 B 427 HIS TYR GLY TYR CYS ARG LYS GLU GLN ASN THR LYS ILE SEQRES 29 B 427 ALA CYS GLU PRO GLN ASP VAL LYS CYS GLY ARG LEU TYR SEQRES 30 B 427 CYS PHE PRO ASN SER PRO GLU ASN LYS ASN PRO CYS ASN SEQRES 31 B 427 ILE TYR TYR SER PRO ASN ASP GLU ASP LYS GLY MET VAL SEQRES 32 B 427 LEU PRO GLY THR LYS CYS ALA ASP ARG LYS ALA CYS SER SEQRES 33 B 427 ASN GLY GLN CYS VAL ASP VAL THR THR PRO TYR MODRES 2ERQ ASN A 218 ASN GLYCOSYLATION SITE MODRES 2ERQ ASN B 218 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET ZN A 700 1 HET CA A 701 1 HET CA A 702 1 HET NAG B 3 14 HET ZN B 700 1 HET CA B 701 1 HET CA B 702 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CA 4(CA 2+) FORMUL 11 HOH *165(H2 O) HELIX 1 1 THR A 188 ALA A 197 1 10 HELIX 2 2 ASP A 208 TYR A 215 1 8 HELIX 3 3 ASN A 218 ARG A 239 1 22 HELIX 4 4 SER A 263 ASP A 278 1 16 HELIX 5 5 LEU A 279 ARG A 282 5 4 HELIX 6 6 ILE A 325 LEU A 341 1 17 HELIX 7 7 SER A 372 MET A 387 1 16 HELIX 8 8 GLN A 389 LYS A 393 5 5 HELIX 9 9 LEU A 396 VAL A 400 5 5 HELIX 10 10 SER A 421 CYS A 425 5 5 HELIX 11 11 ILE A 506 GLY A 516 1 11 HELIX 12 12 GLN A 523 GLY A 533 5 11 HELIX 13 13 GLU A 550 VAL A 554 5 5 HELIX 14 14 THR B 188 ALA B 197 1 10 HELIX 15 15 ASP B 208 TYR B 215 1 8 HELIX 16 16 ASN B 218 ARG B 239 1 22 HELIX 17 17 SER B 263 ASP B 278 1 16 HELIX 18 18 ASP B 278 LYS B 283 1 6 HELIX 19 19 ILE B 325 LEU B 341 1 17 HELIX 20 20 SER B 372 MET B 387 1 16 HELIX 21 21 PRO B 388 LYS B 393 5 6 HELIX 22 22 ILE B 506 GLY B 516 1 11 HELIX 23 23 GLN B 523 GLY B 533 5 11 HELIX 24 24 ASP B 553 GLY B 557 5 5 SHEET 1 A 5 ILE A 242 ILE A 251 0 SHEET 2 A 5 LYS A 199 ALA A 207 1 N VAL A 201 O ALA A 245 SHEET 3 A 5 ASN A 287 THR A 292 1 O LEU A 291 N VAL A 206 SHEET 4 A 5 ALA A 316 GLN A 320 1 O VAL A 319 N LEU A 290 SHEET 5 A 5 GLY A 302 GLY A 304 -1 N LEU A 303 O ILE A 318 SHEET 1 B 2 CYS A 449 ASP A 450 0 SHEET 2 B 2 ARG A 453 PHE A 454 -1 O ARG A 453 N ASP A 450 SHEET 1 C 2 GLU A 460 ARG A 462 0 SHEET 2 C 2 ASP A 472 VAL A 473 -1 O ASP A 472 N CYS A 461 SHEET 1 D 2 PRO A 491 CYS A 492 0 SHEET 2 D 2 GLY A 497 TYR A 498 -1 O GLY A 497 N CYS A 492 SHEET 1 E 2 THR A 520 VAL A 521 0 SHEET 2 E 2 CYS A 561 PHE A 562 -1 O PHE A 562 N THR A 520 SHEET 1 F 2 LYS A 596 CYS A 598 0 SHEET 2 F 2 CYS A 603 ASP A 605 -1 O VAL A 604 N ALA A 597 SHEET 1 G 5 ILE B 242 ILE B 251 0 SHEET 2 G 5 LYS B 199 ALA B 207 1 N VAL B 201 O ALA B 245 SHEET 3 G 5 ASN B 287 THR B 292 1 O LEU B 291 N VAL B 206 SHEET 4 G 5 ALA B 316 GLN B 320 1 O VAL B 319 N LEU B 290 SHEET 5 G 5 GLY B 302 GLY B 304 -1 N LEU B 303 O ILE B 318 SHEET 1 H 2 CYS B 449 ASP B 450 0 SHEET 2 H 2 ARG B 453 PHE B 454 -1 O ARG B 453 N ASP B 450 SHEET 1 I 2 PRO B 491 CYS B 492 0 SHEET 2 I 2 GLY B 497 TYR B 498 -1 O GLY B 497 N CYS B 492 SHEET 1 J 2 THR B 520 VAL B 521 0 SHEET 2 J 2 CYS B 561 PHE B 562 -1 O PHE B 562 N THR B 520 SHEET 1 K 2 ARG B 540 LYS B 541 0 SHEET 2 K 2 LYS B 546 ILE B 547 -1 O ILE B 547 N ARG B 540 SHEET 1 L 3 LYS B 591 ALA B 593 0 SHEET 2 L 3 LYS B 596 CYS B 598 -1 O LYS B 596 N ALA B 593 SHEET 3 L 3 CYS B 603 ASP B 605 -1 O VAL B 604 N ALA B 597 SSBOND 1 CYS A 310 CYS A 390 1555 1555 2.03 SSBOND 2 CYS A 350 CYS A 374 1555 1555 2.04 SSBOND 3 CYS A 352 CYS A 357 1555 1555 2.04 SSBOND 4 CYS A 365 CYS B 365 1555 1555 2.03 SSBOND 5 CYS A 406 CYS A 435 1555 1555 2.04 SSBOND 6 CYS A 417 CYS A 430 1555 1555 2.04 SSBOND 7 CYS A 419 CYS A 425 1555 1555 2.04 SSBOND 8 CYS A 429 CYS A 452 1555 1555 2.04 SSBOND 9 CYS A 443 CYS A 449 1555 1555 2.04 SSBOND 10 CYS A 448 CYS A 474 1555 1555 2.05 SSBOND 11 CYS A 461 CYS A 481 1555 1555 2.03 SSBOND 12 CYS A 468 CYS A 499 1555 1555 2.03 SSBOND 13 CYS A 492 CYS A 504 1555 1555 2.04 SSBOND 14 CYS A 511 CYS A 561 1555 1555 2.03 SSBOND 15 CYS A 526 CYS A 572 1555 1555 2.04 SSBOND 16 CYS A 539 CYS A 549 1555 1555 2.03 SSBOND 17 CYS A 556 CYS A 598 1555 1555 2.03 SSBOND 18 CYS A 592 CYS A 603 1555 1555 2.03 SSBOND 19 CYS B 310 CYS B 390 1555 1555 2.03 SSBOND 20 CYS B 350 CYS B 374 1555 1555 2.03 SSBOND 21 CYS B 352 CYS B 357 1555 1555 2.04 SSBOND 22 CYS B 406 CYS B 435 1555 1555 2.04 SSBOND 23 CYS B 417 CYS B 430 1555 1555 2.05 SSBOND 24 CYS B 419 CYS B 425 1555 1555 2.05 SSBOND 25 CYS B 429 CYS B 452 1555 1555 2.03 SSBOND 26 CYS B 443 CYS B 449 1555 1555 2.04 SSBOND 27 CYS B 448 CYS B 474 1555 1555 2.03 SSBOND 28 CYS B 461 CYS B 481 1555 1555 2.03 SSBOND 29 CYS B 468 CYS B 499 1555 1555 2.05 SSBOND 30 CYS B 492 CYS B 504 1555 1555 2.03 SSBOND 31 CYS B 511 CYS B 561 1555 1555 2.04 SSBOND 32 CYS B 526 CYS B 572 1555 1555 2.04 SSBOND 33 CYS B 539 CYS B 549 1555 1555 2.03 SSBOND 34 CYS B 556 CYS B 598 1555 1555 2.03 SSBOND 35 CYS B 592 CYS B 603 1555 1555 2.05 LINK ND2 ASN A 218 C1 NAG C 1 1555 1555 1.44 LINK C1 NAG B 3 ND2 ASN B 218 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK NE2 HIS A 335 ZN ZN A 700 1555 1555 2.19 LINK NE2 HIS A 339 ZN ZN A 700 1555 1555 2.18 LINK NE2 HIS A 345 ZN ZN A 700 1555 1555 1.89 LINK O VAL A 405 CA CA A 701 1555 1555 2.48 LINK OD1 ASN A 408 CA CA A 701 1555 1555 2.58 LINK O PHE A 410 CA CA A 701 1555 1555 2.41 LINK OE1 GLU A 412 CA CA A 701 1555 1555 2.38 LINK OE1 GLU A 415 CA CA A 701 1555 1555 2.42 LINK OE2 GLU A 415 CA CA A 701 1555 1555 2.73 LINK OD1 ASP A 418 CA CA A 701 1555 1555 2.76 LINK OD2 ASP A 469 CA CA A 702 1555 1555 2.43 LINK O MET A 470 CA CA A 702 1555 1555 2.28 LINK OD1 ASP A 472 CA CA A 702 1555 1555 2.68 LINK OD2 ASP A 472 CA CA A 702 1555 1555 2.62 LINK OD1 ASP A 483 CA CA A 702 1555 1555 2.35 LINK O ARG A 484 CA CA A 702 1555 1555 2.17 LINK CA CA A 702 O HOH A 788 1555 1555 2.31 LINK NE2 HIS B 335 ZN ZN B 700 1555 1555 2.26 LINK NE2 HIS B 339 ZN ZN B 700 1555 1555 2.11 LINK NE2 HIS B 345 ZN ZN B 700 1555 1555 1.90 LINK O VAL B 405 CA CA B 701 1555 1555 2.32 LINK OD1 ASN B 408 CA CA B 701 1555 1555 2.37 LINK O PHE B 410 CA CA B 701 1555 1555 2.47 LINK OE1 GLU B 412 CA CA B 701 1555 1555 2.47 LINK OE1 GLU B 415 CA CA B 701 1555 1555 2.45 LINK OE2 GLU B 415 CA CA B 701 1555 1555 2.71 LINK OD1 ASP B 418 CA CA B 701 1555 1555 2.37 LINK OD2 ASP B 469 CA CA B 702 1555 1555 2.38 LINK O MET B 470 CA CA B 702 1555 1555 2.15 LINK OD1 ASP B 472 CA CA B 702 1555 1555 2.57 LINK OD2 ASP B 472 CA CA B 702 1555 1555 3.13 LINK OD1 ASP B 483 CA CA B 702 1555 1555 2.35 LINK O ARG B 484 CA CA B 702 1555 1555 2.07 LINK N ARG B 484 CA CA B 702 1555 1555 3.35 LINK ZN ZN B 700 O HOH B 775 1555 1555 2.69 LINK ZN ZN B 700 O HOH B 776 1555 1555 2.51 CRYST1 93.940 93.940 244.820 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010645 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010645 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004085 0.00000 MASTER 434 0 9 24 31 0 0 6 0 0 0 66 END