HEADER TOXIN 25-OCT-05 2ERN TITLE INSILICO 3D MODELING OF GAMMA-HEMOLYSIN OF STAPHYLOCOCCUS TITLE 2 AUREUS BACTERIA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-HEMOLYSIN COMPONENT B PRECURSOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-GAMMA-1, H-GAMMA-I SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 STRAIN: STRAIN MW2 KEYWDS MAINLY BETA-SHEET EXPDTA THEORETICAL MODEL AUTHOR N.VIDYA,R.RAJESH,K.PRATHAP REVDAT 1 01-NOV-05 2ERN 0 JRNL AUTH N.VIDYA,R.RAJESH,P.PRATHAP JRNL TITL INSILICO ANALYSIS OF GAMMA-HEMOLYSIN OF JRNL TITL 2 STAPHYLOCOCCUS AUREUS BACTERIA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPDBV 3.7 REMARK 3 AUTHORS : GALE RHODES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ERN COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-2005. REMARK 100 THE RCSB ID CODE IS RCSB035009. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 NZ LYS A 2 CE LYS A 5 0.89 REMARK 500 NZ LYS A 2 NZ LYS A 5 0.99 REMARK 500 CE LYS A 2 NZ LYS A 5 1.47 REMARK 500 O THR A 23 O ALA A 26 1.54 REMARK 500 O LYS A 2 CD1 LEU A 6 1.66 REMARK 500 O SER A 21 OD1 ASN A 25 1.81 REMARK 500 O ASN A 4 CG1 VAL A 7 2.02 REMARK 500 O MET A 1 N LYS A 5 2.18 REMARK 500 O SER A 10 CG2 THR A 13 2.18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 129 CB - CG - OD1 ANGL. DEV. =-76.4 DEGREES REMARK 500 ASN A 129 CB - CG - ND2 ANGL. DEV. =-23.3 DEGREES REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LKF RELATED DB: PDB REMARK 900 LEUKOCIDIN F (HLGB) FROM STAPHYLOCOCCUS AUREUS WITH REMARK 900 PHOSPHOCHOLINE BOUND. DBREF 2ERN A 1 325 UNP P0A076 HLGB_STAAW 1 325 SEQRES 1 A 325 MET LYS MET ASN LYS LEU VAL LYS SER SER VAL ALA THR SEQRES 2 A 325 SER MET ALA LEU LEU LEU LEU SER GLY THR ALA ASN ALA SEQRES 3 A 325 GLU GLY LYS ILE THR PRO VAL SER VAL LYS LYS VAL ASP SEQRES 4 A 325 ASP LYS VAL THR LEU TYR LYS THR THR ALA THR ALA ASP SEQRES 5 A 325 SER ASP LYS PHE LYS ILE SER GLN ILE LEU THR PHE ASN SEQRES 6 A 325 PHE ILE LYS ASP LYS SER TYR ASP LYS ASP THR LEU VAL SEQRES 7 A 325 LEU LYS ALA THR GLY ASN ILE ASN SER GLY PHE VAL LYS SEQRES 8 A 325 PRO ASN PRO ASN ASP TYR ASP PHE SER LYS LEU TYR TRP SEQRES 9 A 325 GLY ALA LYS TYR ASN VAL SER ILE SER SER GLN SER ASN SEQRES 10 A 325 ASP SER VAL ASN VAL VAL ASP TYR ALA PRO LYS ASN GLN SEQRES 11 A 325 ASN GLU GLU PHE GLN VAL GLN ASN THR LEU GLY TYR THR SEQRES 12 A 325 PHE GLY GLY ASP ILE SER ILE SER ASN GLY LEU SER GLY SEQRES 13 A 325 GLY LEU ASN GLY ASN THR ALA PHE SER GLU THR ILE ASN SEQRES 14 A 325 TYR LYS GLN GLU SER TYR ARG THR THR LEU SER ARG ASN SEQRES 15 A 325 THR ASN TYR LYS ASN VAL GLY TRP GLY VAL GLU ALA HIS SEQRES 16 A 325 LYS ILE MET ASN ASN GLY TRP GLY PRO TYR GLY ARG ASP SEQRES 17 A 325 SER PHE HIS PRO THR TYR GLY ASN GLU LEU PHE LEU ALA SEQRES 18 A 325 GLY ARG GLN SER SER ALA TYR ALA GLY GLN ASN PHE ILE SEQRES 19 A 325 ALA GLN HIS GLN MET PRO LEU LEU SER ARG SER ASN PHE SEQRES 20 A 325 ASN PRO GLU PHE LEU SER VAL LEU SER HIS ARG GLN ASP SEQRES 21 A 325 GLY ALA LYS LYS SER LYS ILE THR VAL THR TYR GLN ARG SEQRES 22 A 325 GLU MET ASP LEU TYR GLN ILE ARG TRP ASN GLY PHE TYR SEQRES 23 A 325 TRP ALA GLY ALA ASN TYR LYS ASN PHE LYS THR ARG THR SEQRES 24 A 325 PHE LYS SER THR TYR GLU ILE ASP TRP GLU ASN HIS LYS SEQRES 25 A 325 VAL LYS LEU LEU ASP THR LYS GLU THR GLU ASN ASN LYS HELIX 1 1 MET A 1 ASN A 25 1 25 HELIX 2 2 TYR A 228 ASN A 232 5 5 HELIX 3 3 ALA A 235 MET A 239 5 5 HELIX 4 4 PRO A 240 SER A 245 1 6 SHEET 1 A 6 ALA A 26 GLU A 27 0 SHEET 2 A 6 VAL A 42 SER A 53 -1 O ASP A 52 N GLU A 27 SHEET 3 A 6 ILE A 58 ASP A 69 -1 O LEU A 62 N ALA A 49 SHEET 4 A 6 ASP A 75 ASN A 86 -1 O THR A 76 N ILE A 67 SHEET 5 A 6 GLU A 250 HIS A 257 -1 O PHE A 251 N ALA A 81 SHEET 6 A 6 VAL A 120 ALA A 126 -1 N ASP A 124 O VAL A 254 SHEET 1 B 5 SER A 34 LYS A 37 0 SHEET 2 B 5 VAL A 42 SER A 53 -1 O LEU A 44 N LYS A 36 SHEET 3 B 5 ILE A 58 ASP A 69 -1 O LEU A 62 N ALA A 49 SHEET 4 B 5 ASP A 75 ASN A 86 -1 O THR A 76 N ILE A 67 SHEET 5 B 5 ASN A 246 PHE A 247 -1 O PHE A 247 N ILE A 85 SHEET 1 C 6 TYR A 175 LEU A 179 0 SHEET 2 C 6 ASN A 187 ALA A 194 -1 O GLU A 193 N ARG A 176 SHEET 3 C 6 PHE A 99 SER A 114 -1 N ILE A 112 O VAL A 188 SHEET 4 C 6 LYS A 264 TRP A 282 -1 O GLU A 274 N LYS A 107 SHEET 5 C 6 TRP A 287 ASP A 307 -1 O ILE A 306 N SER A 265 SHEET 6 C 6 LYS A 312 ASN A 324 -1 O LYS A 312 N ASP A 307 SHEET 1 D 3 ILE A 148 ASN A 152 0 SHEET 2 D 3 GLN A 135 TYR A 142 -1 N GLY A 141 O SER A 149 SHEET 3 D 3 PHE A 164 LYS A 171 -1 O GLU A 166 N LEU A 140 CISPEP 1 ALA A 126 PRO A 127 0 -1.62 CISPEP 2 GLY A 203 PRO A 204 0 -0.27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 62 0 0 4 20 0 0 6 0 0 0 25 END