HEADER TRANSFERASE 29-MAR-07 2EOC TITLE SOLUTION STRUCTURE OF THE WGR DOMAIN FROM HUMAN POLY [ADP- TITLE 2 RIBOSE] POLYMERASE-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WGR DOMAIN; COMPND 5 SYNONYM: PARP-3, NAD+, ADP- RIBOSYLTRANSFERASE 3, POLY[ADP- COMPND 6 RIBOSE] SYNTHETASE 3, PADPRT-3, HPARP-3, IRT1; COMPND 7 EC: 2.4.2.30; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P060710-01; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ANTI-PARALLEL BETA-SHEET, CELL CYCLE CONTROL, DNA DAMAGE, KEYWDS 2 TRANSCRIPTION, NAD+, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2EOC 1 VERSN REVDAT 1 01-APR-08 2EOC 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE WGR DOMAIN FROM HUMAN JRNL TITL 2 POLY [ADP-RIBOSE] POLYMERASE-3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EOC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB026906. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.21MM UNIFORMLY 13C, 15N- REMARK 210 LABELED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% REMARK 210 NAN3, 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9822, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 35 -179.11 -174.28 REMARK 500 1 SER A 36 143.51 62.42 REMARK 500 1 SER A 38 140.62 -177.48 REMARK 500 1 SER A 39 100.61 53.08 REMARK 500 1 ALA A 41 173.59 52.51 REMARK 500 1 GLU A 64 -144.86 50.64 REMARK 500 1 ASN A 92 37.14 -99.89 REMARK 500 1 GLU A 139 35.39 -91.61 REMARK 500 1 HIS A 142 35.85 -98.77 REMARK 500 1 PHE A 143 107.32 -54.96 REMARK 500 1 LYS A 149 -177.36 -68.66 REMARK 500 1 VAL A 155 172.38 50.43 REMARK 500 2 SER A 36 -51.47 77.99 REMARK 500 2 SER A 38 94.40 49.04 REMARK 500 2 SER A 39 90.47 -66.37 REMARK 500 2 ASP A 49 142.03 -35.28 REMARK 500 2 GLU A 64 -146.00 55.02 REMARK 500 2 ASN A 92 45.08 -85.05 REMARK 500 2 ARG A 93 35.44 36.60 REMARK 500 2 LYS A 134 39.30 35.04 REMARK 500 2 VAL A 155 172.78 50.45 REMARK 500 3 SER A 35 -56.27 -149.49 REMARK 500 3 SER A 36 168.59 57.31 REMARK 500 3 VAL A 48 107.79 -43.58 REMARK 500 3 ASP A 49 142.51 -34.61 REMARK 500 3 THR A 60 104.72 -57.98 REMARK 500 3 GLU A 64 -146.24 41.40 REMARK 500 3 ASN A 92 49.07 -85.49 REMARK 500 3 ARG A 93 35.63 34.59 REMARK 500 3 LYS A 134 39.46 39.20 REMARK 500 3 GLU A 139 38.22 -92.37 REMARK 500 3 HIS A 142 34.62 -94.45 REMARK 500 3 VAL A 155 173.09 50.58 REMARK 500 4 SER A 35 133.29 -170.95 REMARK 500 4 SER A 36 -59.65 178.39 REMARK 500 4 ASP A 49 141.86 -36.18 REMARK 500 4 THR A 60 104.00 -59.47 REMARK 500 4 GLU A 64 -144.64 48.59 REMARK 500 4 ASP A 65 44.35 -105.67 REMARK 500 4 ASN A 92 49.95 -81.35 REMARK 500 4 ARG A 93 36.10 32.13 REMARK 500 4 GLN A 109 173.19 -59.25 REMARK 500 4 HIS A 142 50.12 -108.48 REMARK 500 4 VAL A 155 172.62 50.71 REMARK 500 5 SER A 38 42.27 -165.74 REMARK 500 5 ASP A 49 141.98 -34.98 REMARK 500 5 THR A 60 93.77 -66.68 REMARK 500 5 TYR A 63 99.17 -53.90 REMARK 500 5 GLU A 64 -145.15 72.48 REMARK 500 5 TYR A 83 117.81 -160.35 REMARK 500 5 ASN A 92 43.98 -91.15 REMARK 500 5 GLU A 139 36.60 -89.09 REMARK 500 5 HIS A 142 36.37 -90.70 REMARK 500 5 VAL A 155 172.77 50.44 REMARK 500 6 SER A 35 130.14 63.15 REMARK 500 6 SER A 36 99.85 -164.62 REMARK 500 6 SER A 38 118.75 61.66 REMARK 500 6 ALA A 41 115.98 66.80 REMARK 500 6 THR A 60 106.61 -56.97 REMARK 500 6 TYR A 63 124.36 -36.96 REMARK 500 6 GLU A 64 -146.01 43.32 REMARK 500 6 ASP A 65 41.58 -107.06 REMARK 500 6 ASN A 92 47.30 -85.47 REMARK 500 6 ARG A 93 36.49 31.98 REMARK 500 6 LYS A 134 36.99 38.73 REMARK 500 6 GLU A 139 36.49 -92.33 REMARK 500 6 HIS A 142 36.56 -95.84 REMARK 500 6 VAL A 155 172.48 50.36 REMARK 500 7 SER A 35 128.70 -170.20 REMARK 500 7 SER A 36 132.01 176.95 REMARK 500 7 SER A 38 143.25 -173.44 REMARK 500 7 ASP A 49 142.09 -36.87 REMARK 500 7 GLU A 64 -143.43 37.69 REMARK 500 7 ASP A 65 42.19 -107.23 REMARK 500 7 ASN A 92 45.53 -91.63 REMARK 500 7 ARG A 93 43.14 39.54 REMARK 500 7 GLU A 139 37.67 -91.38 REMARK 500 7 HIS A 142 40.17 -99.29 REMARK 500 7 PHE A 143 109.59 -55.76 REMARK 500 7 VAL A 155 172.85 50.37 REMARK 500 8 SER A 36 93.04 49.65 REMARK 500 8 SER A 38 83.13 47.31 REMARK 500 8 LYS A 43 162.38 -45.62 REMARK 500 8 ASP A 49 141.62 -35.89 REMARK 500 8 LEU A 54 -33.44 -38.37 REMARK 500 8 GLU A 64 -145.38 50.52 REMARK 500 8 ASP A 65 40.68 -108.81 REMARK 500 8 ASN A 92 39.21 -99.83 REMARK 500 8 PHE A 143 105.01 -54.59 REMARK 500 8 VAL A 155 -175.92 44.54 REMARK 500 9 SER A 36 84.16 36.93 REMARK 500 9 SER A 38 42.12 -179.36 REMARK 500 9 GLU A 64 -143.49 41.22 REMARK 500 9 ASN A 67 108.01 -163.13 REMARK 500 9 ASN A 92 37.41 -94.33 REMARK 500 9 ARG A 93 37.90 39.10 REMARK 500 9 LYS A 134 40.53 34.20 REMARK 500 9 GLU A 139 39.55 -91.86 REMARK 500 9 HIS A 142 41.08 -99.59 REMARK 500 9 PHE A 143 103.10 -56.78 REMARK 500 9 VAL A 155 172.65 50.41 REMARK 500 10 SER A 38 120.98 61.13 REMARK 500 10 SER A 39 42.10 -159.57 REMARK 500 10 ASP A 49 142.28 -37.32 REMARK 500 10 TYR A 63 116.24 -38.69 REMARK 500 10 GLU A 64 -147.24 47.42 REMARK 500 10 ASN A 92 44.50 -95.97 REMARK 500 10 ARG A 93 42.24 38.86 REMARK 500 10 LYS A 134 36.99 39.02 REMARK 500 10 GLU A 139 38.70 -92.00 REMARK 500 10 HIS A 142 38.29 -95.81 REMARK 500 10 LYS A 149 -176.09 -66.22 REMARK 500 10 VAL A 155 172.80 50.68 REMARK 500 11 SER A 39 116.21 -175.44 REMARK 500 11 ALA A 41 135.63 -174.86 REMARK 500 11 ASP A 49 142.11 -38.15 REMARK 500 11 GLU A 64 -143.47 44.17 REMARK 500 11 ASN A 67 107.69 -160.36 REMARK 500 11 ASN A 92 34.35 -99.00 REMARK 500 11 ARG A 93 26.56 44.69 REMARK 500 11 LYS A 134 26.63 41.05 REMARK 500 11 GLU A 139 35.16 -90.37 REMARK 500 11 HIS A 142 35.26 -95.95 REMARK 500 11 PHE A 143 108.36 -57.97 REMARK 500 11 VAL A 155 172.83 50.25 REMARK 500 12 SER A 38 104.40 -161.97 REMARK 500 12 GLU A 42 44.71 -108.81 REMARK 500 12 ASP A 49 142.08 -38.59 REMARK 500 12 THR A 60 106.77 -59.12 REMARK 500 12 GLU A 64 -145.18 47.53 REMARK 500 12 ASN A 92 46.48 -82.42 REMARK 500 12 ARG A 93 34.69 33.16 REMARK 500 12 LYS A 134 39.67 36.99 REMARK 500 12 GLU A 139 39.85 -91.77 REMARK 500 12 HIS A 142 39.89 -98.17 REMARK 500 12 PHE A 143 104.48 -56.25 REMARK 500 12 VAL A 155 172.86 51.10 REMARK 500 13 SER A 38 129.03 -177.08 REMARK 500 13 ALA A 41 142.17 64.84 REMARK 500 13 LYS A 43 115.70 -34.68 REMARK 500 13 LEU A 54 -38.60 -37.02 REMARK 500 13 THR A 60 107.88 -55.99 REMARK 500 13 GLU A 64 -142.47 51.06 REMARK 500 13 ASN A 67 115.10 -162.04 REMARK 500 13 ASN A 92 39.00 -93.63 REMARK 500 13 ARG A 93 25.26 41.50 REMARK 500 13 GLU A 139 36.99 -87.77 REMARK 500 13 HIS A 142 38.71 -97.17 REMARK 500 13 PHE A 143 104.84 -58.36 REMARK 500 13 LYS A 149 -175.66 -64.03 REMARK 500 13 VAL A 155 179.38 47.69 REMARK 500 14 SER A 38 121.54 -178.16 REMARK 500 14 SER A 39 157.96 58.17 REMARK 500 14 ASP A 49 143.78 -39.76 REMARK 500 14 GLU A 64 -142.53 46.39 REMARK 500 14 ASP A 65 40.19 -109.36 REMARK 500 14 ASN A 92 47.04 -84.24 REMARK 500 14 ARG A 93 34.91 36.14 REMARK 500 14 VAL A 104 92.44 -61.31 REMARK 500 14 GLU A 139 36.90 -89.53 REMARK 500 14 HIS A 142 40.82 -97.03 REMARK 500 14 PHE A 143 104.71 -59.65 REMARK 500 14 VAL A 155 172.47 50.52 REMARK 500 15 GLU A 42 108.65 -59.79 REMARK 500 15 ASP A 49 141.86 -34.22 REMARK 500 15 THR A 60 101.74 -59.62 REMARK 500 15 GLU A 64 -145.80 57.28 REMARK 500 15 ASN A 92 47.30 -82.80 REMARK 500 15 ARG A 93 38.05 35.67 REMARK 500 15 LYS A 134 37.55 34.60 REMARK 500 15 GLU A 139 39.53 -91.97 REMARK 500 15 HIS A 142 36.64 -92.27 REMARK 500 15 LYS A 149 -179.57 -64.90 REMARK 500 15 VAL A 155 -176.08 45.21 REMARK 500 16 SER A 35 101.20 -167.04 REMARK 500 16 SER A 39 -45.86 -146.08 REMARK 500 16 ALA A 41 125.76 62.05 REMARK 500 16 ASP A 49 142.39 -39.95 REMARK 500 16 GLU A 64 -143.65 46.93 REMARK 500 16 ASP A 65 40.13 -108.66 REMARK 500 16 ASN A 92 49.28 -85.64 REMARK 500 16 ARG A 93 37.09 31.59 REMARK 500 16 VAL A 155 173.14 50.39 REMARK 500 17 ALA A 41 126.43 69.28 REMARK 500 17 ASP A 49 142.67 -34.83 REMARK 500 17 THR A 60 97.16 -60.24 REMARK 500 17 TYR A 63 131.80 -35.26 REMARK 500 17 GLU A 64 -144.22 34.37 REMARK 500 17 ASN A 92 46.27 -86.90 REMARK 500 17 ARG A 93 36.91 31.60 REMARK 500 17 LYS A 134 39.47 35.22 REMARK 500 17 GLU A 139 30.44 -85.58 REMARK 500 17 PHE A 143 93.00 -45.83 REMARK 500 17 VAL A 155 -175.11 45.09 REMARK 500 18 SER A 35 178.70 49.91 REMARK 500 18 SER A 36 -47.62 -151.78 REMARK 500 18 ALA A 41 135.64 173.96 REMARK 500 18 ARG A 44 144.88 -35.47 REMARK 500 18 VAL A 48 126.27 -39.18 REMARK 500 18 TYR A 63 127.05 -34.47 REMARK 500 18 GLU A 64 -147.28 35.24 REMARK 500 18 ASP A 65 31.57 -97.80 REMARK 500 18 ASN A 67 88.91 -159.92 REMARK 500 18 ASN A 92 37.65 -95.49 REMARK 500 18 LYS A 134 36.89 34.14 REMARK 500 18 GLU A 139 35.78 -97.08 REMARK 500 18 HIS A 142 34.47 -91.42 REMARK 500 18 VAL A 155 -175.51 44.85 REMARK 500 19 SER A 36 151.56 -42.12 REMARK 500 19 SER A 39 145.80 61.86 REMARK 500 19 GLU A 42 107.59 -52.14 REMARK 500 19 ASP A 49 136.80 -38.17 REMARK 500 19 THR A 60 104.63 -59.71 REMARK 500 19 GLU A 64 -142.32 54.84 REMARK 500 19 ASN A 92 46.91 -83.40 REMARK 500 19 ARG A 93 34.07 35.04 REMARK 500 19 GLN A 109 174.18 -59.67 REMARK 500 19 LYS A 134 38.02 35.28 REMARK 500 19 GLU A 139 35.69 -90.28 REMARK 500 19 PHE A 143 92.99 -49.56 REMARK 500 19 VAL A 155 -174.92 44.90 REMARK 500 20 SER A 36 138.59 -172.32 REMARK 500 20 GLU A 64 -141.39 58.81 REMARK 500 20 ASP A 65 43.18 -109.17 REMARK 500 20 GLU A 139 35.23 -92.11 REMARK 500 20 HIS A 142 40.75 -98.78 REMARK 500 20 VAL A 155 172.42 50.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000050.1 RELATED DB: TARGETDB DBREF 2EOC A 41 157 UNP Q9Y6F1 PARP3_HUMAN 41 157 SEQADV 2EOC GLY A 34 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC SER A 35 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC SER A 36 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC GLY A 37 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC SER A 38 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC SER A 39 UNP Q9Y6F1 EXPRESSION TAG SEQADV 2EOC GLY A 40 UNP Q9Y6F1 EXPRESSION TAG SEQRES 1 A 124 GLY SER SER GLY SER SER GLY ALA GLU LYS ARG ILE ILE SEQRES 2 A 124 ARG VAL ASP PRO THR CYS PRO LEU SER SER ASN PRO GLY SEQRES 3 A 124 THR GLN VAL TYR GLU ASP TYR ASN CYS THR LEU ASN GLN SEQRES 4 A 124 THR ASN ILE GLU ASN ASN ASN ASN LYS PHE TYR ILE ILE SEQRES 5 A 124 GLN LEU LEU GLN ASP SER ASN ARG PHE PHE THR CYS TRP SEQRES 6 A 124 ASN ARG TRP GLY ARG VAL GLY GLU VAL GLY GLN SER LYS SEQRES 7 A 124 ILE ASN HIS PHE THR ARG LEU GLU ASP ALA LYS LYS ASP SEQRES 8 A 124 PHE GLU LYS LYS PHE ARG GLU LYS THR LYS ASN ASN TRP SEQRES 9 A 124 ALA GLU ARG ASP HIS PHE VAL SER HIS PRO GLY LYS TYR SEQRES 10 A 124 THR LEU ILE GLU VAL GLN ALA HELIX 1 1 ARG A 117 LYS A 134 1 18 HELIX 2 2 GLU A 139 PHE A 143 5 5 SHEET 1 A 5 LYS A 111 PHE A 115 0 SHEET 2 A 5 PHE A 95 ARG A 100 -1 N ASN A 99 O LYS A 111 SHEET 3 A 5 ASN A 79 GLN A 89 -1 N LEU A 88 O THR A 96 SHEET 4 A 5 GLN A 61 ASN A 74 -1 N GLN A 72 O LYS A 81 SHEET 5 A 5 THR A 151 ILE A 153 -1 O ILE A 153 N THR A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 300 0 0 2 5 0 0 6 0 0 0 10 END