HEADER HYDROLASE 28-MAR-07 2ENX TITLE STRUCTURE OF THE FAMILY II INORGANIC PYROPHOSPHATASE FROM TITLE 2 STREPTOCOCCUS AGALACTIAE AT 2.8 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGANESE-DEPENDENT INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FAMILY II INORGANIC PYROPHOSPHATASE, IMIDODIPHOSPHATE; COMPND 5 EC: 3.6.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 205921; SOURCE 4 STRAIN: A909; SOURCE 5 GENE: PPAC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 KEYWDS STREPTOCOCCUS AGALACTIAE, FAMILY II, INORGANIC, PYROPHOSPHATASE, KEYWDS 2 SIGNALLING, PHOSPHORYLATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.RANTANEN,L.LEHTIO,L.RAJAGOPAL,C.E.RUBENS,A.GOLDMAN REVDAT 4 13-JUL-11 2ENX 1 VERSN REVDAT 3 24-FEB-09 2ENX 1 VERSN REVDAT 2 12-JUN-07 2ENX 1 AUTHOR JRNL REVDAT 1 29-MAY-07 2ENX 0 JRNL AUTH M.K.RANTANEN,L.LEHTIO,L.RAJAGOPAL,C.E.RUBENS,A.GOLDMAN JRNL TITL STRUCTURE OF THE STREPTOCOCCUS AGALACTIAE FAMILY II JRNL TITL 2 INORGANIC PYROPHOSPHATASE AT 2.80 A RESOLUTION JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 738 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17505113 JRNL DOI 10.1107/S0907444907019695 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1036 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4714 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : -1.20000 REMARK 3 B33 (A**2) : 1.80000 REMARK 3 B12 (A**2) : -0.60000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.548 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.380 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.284 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.899 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.807 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4834 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6582 ; 1.513 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 618 ; 6.247 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;40.281 ;26.075 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 804 ;19.307 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.653 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 784 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3616 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2318 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3358 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 225 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.092 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 311 4 REMARK 3 1 B 2 B 311 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2357 ; 0.32 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ENX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB026891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20700 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : 0.30000 REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1I74 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M AMMONIUM PHOSPHATE MONOBASIC, PH REMARK 280 4.2, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 90.98000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.52733 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.20333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 90.98000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 52.52733 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.20333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 90.98000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 52.52733 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.20333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 90.98000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 52.52733 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.20333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 90.98000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 52.52733 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.20333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 90.98000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 52.52733 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.20333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 105.05465 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 88.40667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 105.05465 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 88.40667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 105.05465 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 88.40667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 105.05465 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 88.40667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 105.05465 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 88.40667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 105.05465 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 88.40667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -X+1, -Y, Z+3/2. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -181.96000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 105.05465 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 88.40667 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 56.21 -103.73 REMARK 500 ASN A 79 -18.51 -164.48 REMARK 500 ILE A 85 154.89 -48.23 REMARK 500 ASN A 104 43.25 38.10 REMARK 500 ARG A 114 86.62 -152.69 REMARK 500 PRO A 158 15.53 -67.54 REMARK 500 ILE A 202 4.07 -59.88 REMARK 500 ASP A 203 24.72 -140.69 REMARK 500 ASP A 205 85.84 -155.88 REMARK 500 SER A 262 61.99 62.68 REMARK 500 ASN A 272 40.35 -106.73 REMARK 500 ASN A 286 40.29 70.34 REMARK 500 ASN A 287 3.90 80.08 REMARK 500 VAL A 301 -61.40 -126.26 REMARK 500 ALA B 67 -33.93 -31.34 REMARK 500 ASN B 79 -24.85 -145.06 REMARK 500 ALA B 103 144.68 174.78 REMARK 500 LEU B 154 60.51 39.98 REMARK 500 ASN B 192 88.97 -58.31 REMARK 500 LEU B 230 -37.48 -37.14 REMARK 500 GLU B 234 -72.06 -39.62 REMARK 500 SER B 262 53.31 70.31 REMARK 500 ASN B 286 48.83 22.47 REMARK 500 ASN B 287 4.73 89.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU B 193 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2090 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD2 REMARK 620 2 ASP A 77 OD1 138.8 REMARK 620 3 HIS A 9 NE2 78.5 82.0 REMARK 620 4 2PN A1001 O5 97.4 117.1 86.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 15 OD2 REMARK 620 2 ASP A 77 OD2 79.6 REMARK 620 3 HIS A 99 NE2 85.1 73.0 REMARK 620 4 ASP A 151 OD2 91.0 159.3 88.0 REMARK 620 5 2PN A1001 O4 159.5 99.9 75.3 82.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2PN A1001 O6 REMARK 620 2 HOH A1099 O 58.1 REMARK 620 3 2PN A1001 O3 78.0 74.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2PN B1002 O5 REMARK 620 2 ASP B 77 OD1 135.2 REMARK 620 3 ASP B 13 OD2 103.0 111.8 REMARK 620 4 HIS B 9 NE2 97.3 96.7 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2PN B1002 O4 REMARK 620 2 HIS B 99 NE2 89.0 REMARK 620 3 ASP B 77 OD2 88.9 91.9 REMARK 620 4 ASP B 15 OD2 178.2 90.8 92.9 REMARK 620 5 ASP B 151 OD2 88.5 86.8 177.1 89.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2PN B1002 O6 REMARK 620 2 2PN B1002 O3 72.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP A 1031 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP B 2031 DBREF 2ENX A 2 311 UNP Q3K0B5 Q3K0B5_STRA1 2 311 DBREF 2ENX B 2 311 UNP Q3K0B5 Q3K0B5_STRA1 2 311 SEQRES 1 A 310 SER LYS ILE LEU VAL PHE GLY HIS GLN ASN PRO ASP SER SEQRES 2 A 310 ASP ALA ILE GLY SER SER VAL ALA PHE ALA TYR LEU ALA SEQRES 3 A 310 LYS GLU ALA TRP GLY LEU ASP THR GLU ALA VAL ALA LEU SEQRES 4 A 310 GLY THR PRO ASN GLU GLU THR ALA TYR VAL LEU ASP TYR SEQRES 5 A 310 PHE GLY VAL GLN ALA PRO ARG VAL VAL GLU SER ALA LYS SEQRES 6 A 310 ALA GLU GLY VAL GLU THR VAL ILE LEU THR ASP HIS ASN SEQRES 7 A 310 GLU PHE GLN GLN SER ILE SER ASP ILE LYS ASP VAL THR SEQRES 8 A 310 VAL TYR GLY VAL VAL ASP HIS HIS ARG VAL ALA ASN PHE SEQRES 9 A 310 GLU THR ALA ASN PRO LEU TYR MET ARG LEU GLU PRO VAL SEQRES 10 A 310 GLY SER ALA SER SER ILE VAL TYR ARG MET PHE LYS GLU SEQRES 11 A 310 ASN GLY VAL SER VAL PRO LYS GLU LEU ALA GLY LEU LEU SEQRES 12 A 310 LEU SER GLY LEU ILE SER ASP THR LEU LEU LEU LYS SER SEQRES 13 A 310 PRO THR THR HIS ALA SER ASP ILE PRO VAL ALA LYS GLU SEQRES 14 A 310 LEU ALA GLU LEU ALA GLY VAL ASN LEU GLU GLU TYR GLY SEQRES 15 A 310 LEU GLU MET LEU LYS ALA GLY THR ASN LEU SER SER LYS SEQRES 16 A 310 THR ALA ALA GLU LEU ILE ASP ILE ASP ALA LYS THR PHE SEQRES 17 A 310 GLU LEU ASN GLY GLU ALA VAL ARG VAL ALA GLN VAL ASN SEQRES 18 A 310 THR VAL ASP ILE ASN ASP ILE LEU ALA ARG GLN GLU GLU SEQRES 19 A 310 ILE GLU VAL ALA ILE GLN GLU ALA ILE VAL THR GLU GLY SEQRES 20 A 310 TYR SER ASP PHE VAL LEU MET ILE THR ASP ILE VAL ASN SEQRES 21 A 310 SER ASN SER GLU ILE LEU ALA LEU GLY SER ASN MET ALA SEQRES 22 A 310 LYS VAL GLU ALA ALA PHE GLU PHE THR LEU GLU ASN ASN SEQRES 23 A 310 HIS ALA PHE LEU ALA GLY ALA VAL SER ARG LYS LYS GLN SEQRES 24 A 310 VAL VAL PRO GLN LEU THR GLU SER TYR ASN ALA SEQRES 1 B 310 SER LYS ILE LEU VAL PHE GLY HIS GLN ASN PRO ASP SER SEQRES 2 B 310 ASP ALA ILE GLY SER SER VAL ALA PHE ALA TYR LEU ALA SEQRES 3 B 310 LYS GLU ALA TRP GLY LEU ASP THR GLU ALA VAL ALA LEU SEQRES 4 B 310 GLY THR PRO ASN GLU GLU THR ALA TYR VAL LEU ASP TYR SEQRES 5 B 310 PHE GLY VAL GLN ALA PRO ARG VAL VAL GLU SER ALA LYS SEQRES 6 B 310 ALA GLU GLY VAL GLU THR VAL ILE LEU THR ASP HIS ASN SEQRES 7 B 310 GLU PHE GLN GLN SER ILE SER ASP ILE LYS ASP VAL THR SEQRES 8 B 310 VAL TYR GLY VAL VAL ASP HIS HIS ARG VAL ALA ASN PHE SEQRES 9 B 310 GLU THR ALA ASN PRO LEU TYR MET ARG LEU GLU PRO VAL SEQRES 10 B 310 GLY SER ALA SER SER ILE VAL TYR ARG MET PHE LYS GLU SEQRES 11 B 310 ASN GLY VAL SER VAL PRO LYS GLU LEU ALA GLY LEU LEU SEQRES 12 B 310 LEU SER GLY LEU ILE SER ASP THR LEU LEU LEU LYS SER SEQRES 13 B 310 PRO THR THR HIS ALA SER ASP ILE PRO VAL ALA LYS GLU SEQRES 14 B 310 LEU ALA GLU LEU ALA GLY VAL ASN LEU GLU GLU TYR GLY SEQRES 15 B 310 LEU GLU MET LEU LYS ALA GLY THR ASN LEU SER SER LYS SEQRES 16 B 310 THR ALA ALA GLU LEU ILE ASP ILE ASP ALA LYS THR PHE SEQRES 17 B 310 GLU LEU ASN GLY GLU ALA VAL ARG VAL ALA GLN VAL ASN SEQRES 18 B 310 THR VAL ASP ILE ASN ASP ILE LEU ALA ARG GLN GLU GLU SEQRES 19 B 310 ILE GLU VAL ALA ILE GLN GLU ALA ILE VAL THR GLU GLY SEQRES 20 B 310 TYR SER ASP PHE VAL LEU MET ILE THR ASP ILE VAL ASN SEQRES 21 B 310 SER ASN SER GLU ILE LEU ALA LEU GLY SER ASN MET ALA SEQRES 22 B 310 LYS VAL GLU ALA ALA PHE GLU PHE THR LEU GLU ASN ASN SEQRES 23 B 310 HIS ALA PHE LEU ALA GLY ALA VAL SER ARG LYS LYS GLN SEQRES 24 B 310 VAL VAL PRO GLN LEU THR GLU SER TYR ASN ALA HET MN A 401 1 HET MN A 402 1 HET MG A 501 1 HET 2PN A1001 9 HET TRP A1031 15 HET MN B 403 1 HET MN B 404 1 HET MG B 502 1 HET 2PN B1002 9 HET TRP B2031 15 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM 2PN IMIDODIPHOSPHORIC ACID HETNAM TRP TRYPTOPHAN FORMUL 3 MN 4(MN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 6 2PN 2(H5 N O6 P2) FORMUL 7 TRP 2(C11 H12 N2 O2) FORMUL 13 HOH *155(H2 O) HELIX 1 1 ASP A 13 GLY A 32 1 20 HELIX 2 2 ASN A 44 PHE A 54 1 11 HELIX 3 3 SER A 64 GLY A 69 1 6 HELIX 4 4 GLU A 80 SER A 84 5 5 HELIX 5 5 ALA A 121 ASN A 132 1 12 HELIX 6 6 PRO A 137 LEU A 153 1 17 HELIX 7 7 SER A 163 GLY A 176 1 14 HELIX 8 8 ASN A 178 GLY A 190 1 13 HELIX 9 9 THR A 197 ILE A 202 1 6 HELIX 10 10 ASP A 225 ALA A 231 1 7 HELIX 11 11 ARG A 232 GLY A 248 1 17 HELIX 12 12 ASN A 272 GLU A 281 1 10 HELIX 13 13 SER A 296 VAL A 301 1 6 HELIX 14 14 VAL A 301 TYR A 309 1 9 HELIX 15 15 ASP B 13 TRP B 31 1 19 HELIX 16 16 ASN B 44 PHE B 54 1 11 HELIX 17 17 ASP B 87 VAL B 91 5 5 HELIX 18 18 SER B 120 GLY B 133 1 14 HELIX 19 19 PRO B 137 LEU B 153 1 17 HELIX 20 20 SER B 163 GLY B 176 1 14 HELIX 21 21 ASN B 178 LYS B 188 1 11 HELIX 22 22 THR B 197 ASP B 203 1 7 HELIX 23 23 ASP B 225 ALA B 231 1 7 HELIX 24 24 ARG B 232 GLY B 248 1 17 HELIX 25 25 ASN B 272 GLU B 281 1 10 HELIX 26 26 SER B 296 VAL B 301 1 6 HELIX 27 27 VAL B 301 ALA B 311 1 11 SHEET 1 A 5 THR A 35 ALA A 37 0 SHEET 2 A 5 ILE A 4 PHE A 7 1 N ILE A 4 O GLU A 36 SHEET 3 A 5 THR A 72 THR A 76 1 O THR A 76 N PHE A 7 SHEET 4 A 5 THR A 92 ASP A 98 1 O TYR A 94 N VAL A 73 SHEET 5 A 5 TYR A 112 LEU A 115 1 O TYR A 112 N TYR A 94 SHEET 1 B 5 ALA A 206 LEU A 211 0 SHEET 2 B 5 GLU A 214 THR A 223 -1 O VAL A 216 N PHE A 209 SHEET 3 B 5 ASP A 251 ASP A 258 1 O VAL A 253 N ALA A 219 SHEET 4 B 5 ASN A 263 GLY A 270 -1 O ASN A 263 N ASP A 258 SHEET 5 B 5 HIS A 288 ALA A 292 -1 O ALA A 289 N ILE A 266 SHEET 1 C 5 THR B 35 ALA B 37 0 SHEET 2 C 5 ILE B 4 PHE B 7 1 N VAL B 6 O GLU B 36 SHEET 3 C 5 THR B 72 THR B 76 1 O ILE B 74 N LEU B 5 SHEET 4 C 5 THR B 92 ASP B 98 1 O THR B 92 N VAL B 73 SHEET 5 C 5 TYR B 112 LEU B 115 1 O ARG B 114 N VAL B 96 SHEET 1 D 5 ASP B 205 LEU B 211 0 SHEET 2 D 5 GLU B 214 THR B 223 -1 O VAL B 218 N LYS B 207 SHEET 3 D 5 ASP B 251 ASP B 258 1 O THR B 257 N THR B 223 SHEET 4 D 5 ASN B 263 LEU B 269 -1 O LEU B 267 N LEU B 254 SHEET 5 D 5 HIS B 288 LEU B 291 -1 O LEU B 291 N SER B 264 LINK MN MN A 401 OD2 ASP A 13 1555 1555 2.47 LINK MN MN A 401 OD1 ASP A 77 1555 1555 1.77 LINK MN MN A 401 NE2 HIS A 9 1555 1555 2.49 LINK MN MN A 401 O5 2PN A1001 1555 1555 2.66 LINK MN MN A 402 OD2 ASP A 15 1555 1555 2.15 LINK MN MN A 402 OD2 ASP A 77 1555 1555 2.28 LINK MN MN A 402 NE2 HIS A 99 1555 1555 2.50 LINK MN MN A 402 OD2 ASP A 151 1555 1555 2.41 LINK MN MN A 402 O4 2PN A1001 1555 1555 2.04 LINK MG MG A 501 O6 2PN A1001 1555 1555 2.48 LINK MG MG A 501 O HOH A1099 1555 1555 2.59 LINK MG MG A 501 O3 2PN A1001 1555 1555 2.12 LINK MN MN B 403 O5 2PN B1002 1555 1555 1.92 LINK MN MN B 403 OD1 ASP B 77 1555 1555 1.97 LINK MN MN B 403 OD2 ASP B 13 1555 1555 1.98 LINK MN MN B 403 NE2 HIS B 9 1555 1555 2.63 LINK MN MN B 404 O4 2PN B1002 1555 1555 2.27 LINK MN MN B 404 NE2 HIS B 99 1555 1555 2.28 LINK MN MN B 404 OD2 ASP B 77 1555 1555 2.46 LINK MN MN B 404 OD2 ASP B 15 1555 1555 2.11 LINK MN MN B 404 OD2 ASP B 151 1555 1555 2.06 LINK MG MG B 502 O6 2PN B1002 1555 1555 2.35 LINK MG MG B 502 O3 2PN B1002 1555 1555 2.29 SITE 1 AC1 5 HIS A 9 ASP A 13 ASP A 77 MN A 402 SITE 2 AC1 5 2PN A1001 SITE 1 AC2 6 ASP A 15 ASP A 77 HIS A 99 ASP A 151 SITE 2 AC2 6 MN A 401 2PN A1001 SITE 1 AC3 3 ARG A 297 2PN A1001 HOH A1099 SITE 1 AC4 13 HIS A 9 ASP A 77 HIS A 99 HIS A 100 SITE 2 AC4 13 ASP A 151 LYS A 207 ARG A 297 LYS A 298 SITE 3 AC4 13 MN A 401 MN A 402 MG A 501 HOH A1085 SITE 4 AC4 13 HOH A1099 SITE 1 AC5 5 TRP A 31 TYR A 94 GLY A 95 VAL A 97 SITE 2 AC5 5 TYR A 112 SITE 1 AC6 5 HIS B 9 ASP B 13 ASP B 77 MN B 404 SITE 2 AC6 5 2PN B1002 SITE 1 AC7 6 ASP B 15 ASP B 77 HIS B 99 ASP B 151 SITE 2 AC7 6 MN B 403 2PN B1002 SITE 1 AC8 1 2PN B1002 SITE 1 AC9 13 HIS B 9 ASP B 13 ASP B 77 HIS B 99 SITE 2 AC9 13 HIS B 100 ASP B 151 LYS B 207 ARG B 297 SITE 3 AC9 13 LYS B 298 MN B 403 MN B 404 MG B 502 SITE 4 AC9 13 HOH B2097 SITE 1 BC1 5 TRP B 31 TYR B 94 TYR B 112 MET B 128 SITE 2 BC1 5 HOH B2060 CRYST1 181.960 181.960 132.610 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005496 0.003173 0.000000 0.00000 SCALE2 0.000000 0.006346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007541 0.00000 MASTER 478 0 10 27 20 0 22 6 0 0 0 48 END