HEADER ISOMERASE 14-JAN-07 2E7U TITLE CRYSTAL STRUCTURE OF GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE FROM TITLE 2 THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GSA, GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE, GSA-AT; COMPND 5 EC: 5.4.3.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS PLP ENZYME, GSA, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MIZUTANI,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2E7U 1 VERSN REVDAT 2 24-FEB-09 2E7U 1 VERSN REVDAT 1 17-JUL-07 2E7U 0 JRNL AUTH H.MIZUTANI,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF GLUTAMATE-1-SEMIALDEHYDE JRNL TITL 2 2,1-AMINOMUTASE FROM THERMUS THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 5261910.990 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 57792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2894 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9113 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 453 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3255 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.74000 REMARK 3 B22 (A**2) : -5.74000 REMARK 3 B33 (A**2) : 11.48000 REMARK 3 B12 (A**2) : -2.81000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.88 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.090 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.560 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.050 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 66.96 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PMP.PARAM REMARK 3 PARAMETER FILE 5 : GOL.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : PMP.TOP REMARK 3 TOPOLOGY FILE 5 : GOL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB026334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57880 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.900 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : 0.35300 REMARK 200 FOR SHELL : 5.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4GSA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 3.0M NACL, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 90.33700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.15609 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.23333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 90.33700 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 52.15609 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.23333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 90.33700 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 52.15609 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.23333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 90.33700 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 52.15609 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.23333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 90.33700 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 52.15609 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.23333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 90.33700 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 52.15609 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.23333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 104.31218 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 78.46667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 104.31218 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 78.46667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 104.31218 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 78.46667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 104.31218 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.46667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 104.31218 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 78.46667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 104.31218 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 78.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY THE REMARK 300 OPERATION: Y, X, -Z+1. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 117.70000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1342 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1338 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 83 CD ARG A 83 NE -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 147 32.62 -99.41 REMARK 500 ARG A 196 39.00 -157.07 REMARK 500 LYS A 266 -95.80 46.18 REMARK 500 PRO A 396 47.11 -77.36 REMARK 500 SER A 397 138.69 -172.52 REMARK 500 PHE A 399 52.94 -91.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1260 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH A1351 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH A1353 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH A1375 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A1376 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH A1403 DISTANCE = 5.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 399 O REMARK 620 2 HOH A1068 O 90.4 REMARK 620 3 HOH A1230 O 120.7 81.0 REMARK 620 4 ASN A 211 O 82.6 165.3 91.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 160 O REMARK 620 2 HOH A1053 O 92.5 REMARK 620 3 HOH A1078 O 75.9 96.8 REMARK 620 4 GLY A 158 O 97.3 86.1 172.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000223.1 RELATED DB: TARGETDB DBREF 2E7U A 1 424 UNP Q5SJS4 GSA_THET8 1 424 SEQRES 1 A 424 MET GLU ARG PRO ILE SER GLU ALA TYR PHE GLN GLU ALA SEQRES 2 A 424 LYS ARG HIS ILE PRO GLY GLY VAL SER SER PRO VAL ARG SEQRES 3 A 424 ALA PHE LYS ALA VAL GLY GLY THR PRO PRO PHE LEU VAL SEQRES 4 A 424 ARG GLY GLU GLY ALA TYR VAL TRP ASP ALA ASP GLY ASN SEQRES 5 A 424 ARG TYR LEU ASP TYR VAL MET SER TRP GLY PRO LEU ILE SEQRES 6 A 424 LEU GLY HIS ALA HIS PRO LYS VAL LEU ALA ARG VAL ARG SEQRES 7 A 424 GLU THR LEU GLU ARG GLY LEU THR PHE GLY ALA PRO SER SEQRES 8 A 424 PRO LEU GLU VAL ALA LEU ALA LYS LYS VAL LYS ARG ALA SEQRES 9 A 424 TYR PRO PHE VAL ASP LEU VAL ARG PHE VAL ASN SER GLY SEQRES 10 A 424 THR GLU ALA THR MET SER ALA LEU ARG LEU ALA ARG GLY SEQRES 11 A 424 TYR THR GLY ARG PRO TYR ILE VAL LYS PHE ARG GLY ASN SEQRES 12 A 424 TYR HIS GLY HIS ALA ASP GLY LEU LEU VAL GLU ALA GLY SEQRES 13 A 424 SER GLY ALA LEU THR LEU GLY VAL PRO SER SER ALA GLY SEQRES 14 A 424 VAL PRO GLU GLU TYR ALA LYS LEU THR LEU VAL LEU GLU SEQRES 15 A 424 TYR ASN ASP PRO GLU GLY LEU ARG GLU VAL LEU LYS ARG SEQRES 16 A 424 ARG GLY GLU GLU ILE ALA ALA ILE ILE PHE GLU PRO VAL SEQRES 17 A 424 VAL GLY ASN ALA GLY VAL LEU VAL PRO THR GLU ASP PHE SEQRES 18 A 424 LEU LYS ALA LEU HIS GLU ALA LYS ALA TYR GLY VAL LEU SEQRES 19 A 424 LEU ILE ALA ASP GLU VAL MET THR GLY PHE ARG LEU ALA SEQRES 20 A 424 PHE GLY GLY ALA THR GLU LEU LEU GLY LEU LYS PRO ASP SEQRES 21 A 424 LEU VAL THR LEU GLY LYS ILE LEU GLY GLY GLY LEU PRO SEQRES 22 A 424 ALA ALA ALA TYR ALA GLY ARG ARG GLU ILE MET GLU LYS SEQRES 23 A 424 VAL ALA PRO LEU GLY PRO VAL TYR GLN ALA GLY THR LEU SEQRES 24 A 424 SER GLY ASN PRO LEU ALA MET ALA ALA GLY LEU ALA THR SEQRES 25 A 424 LEU GLU LEU LEU GLU GLU ASN PRO GLY TYR TYR ALA TYR SEQRES 26 A 424 LEU GLU ASP LEU GLY ALA ARG LEU GLU ALA GLY LEU LYS SEQRES 27 A 424 GLU VAL LEU LYS GLU LYS GLY LEU PRO HIS THR VAL ASN SEQRES 28 A 424 ARG VAL GLY SER MET ILE THR VAL PHE PHE THR GLU GLY SEQRES 29 A 424 PRO VAL VAL THR PHE GLN ASP ALA ARG ARG THR ASP THR SEQRES 30 A 424 GLU LEU PHE LYS ARG PHE PHE HIS GLY LEU LEU ASP ARG SEQRES 31 A 424 GLY ILE TYR TRP PRO PRO SER ASN PHE GLU ALA ALA PHE SEQRES 32 A 424 LEU SER VAL ALA HIS ARG GLU GLU ASP VAL GLU LYS THR SEQRES 33 A 424 LEU GLU ALA LEU ARG LYS ALA LEU HET NA A1002 1 HET NA A1003 1 HET PMP A1001 16 HET GOL A1004 6 HETNAM NA SODIUM ION HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETNAM GOL GLYCEROL HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA 2(NA 1+) FORMUL 4 PMP C8 H13 N2 O5 P FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *427(H2 O) HELIX 1 1 ARG A 3 ILE A 17 1 15 HELIX 2 2 PRO A 18 VAL A 21 5 4 HELIX 3 3 SER A 23 PHE A 28 5 6 HELIX 4 4 VAL A 58 GLY A 62 5 5 HELIX 5 5 HIS A 70 ARG A 83 1 14 HELIX 6 6 SER A 91 TYR A 105 1 15 HELIX 7 7 SER A 116 GLY A 133 1 18 HELIX 8 8 ALA A 148 LEU A 151 5 4 HELIX 9 9 PRO A 171 LYS A 176 1 6 HELIX 10 10 ASP A 185 GLY A 197 1 13 HELIX 11 11 THR A 218 ALA A 228 1 11 HELIX 12 12 LYS A 229 GLY A 232 5 4 HELIX 13 13 GLY A 249 GLY A 256 1 8 HELIX 14 14 GLY A 265 GLY A 270 5 6 HELIX 15 15 ARG A 280 GLU A 285 1 6 HELIX 16 16 ASN A 302 ASN A 319 1 18 HELIX 17 17 PRO A 320 LYS A 344 1 25 HELIX 18 18 THR A 368 ARG A 373 1 6 HELIX 19 19 ASP A 376 ASP A 389 1 14 HELIX 20 20 ARG A 409 LEU A 424 1 16 SHEET 1 A 4 LEU A 38 GLU A 42 0 SHEET 2 A 4 TYR A 45 ASP A 48 -1 O TYR A 45 N GLU A 42 SHEET 3 A 4 ARG A 53 ASP A 56 -1 O TYR A 54 N VAL A 46 SHEET 4 A 4 ILE A 392 TYR A 393 1 O TYR A 393 N LEU A 55 SHEET 1 B 7 LEU A 110 VAL A 114 0 SHEET 2 B 7 ALA A 275 GLY A 279 -1 O ALA A 275 N VAL A 114 SHEET 3 B 7 LEU A 261 LEU A 264 -1 N LEU A 264 O ALA A 276 SHEET 4 B 7 LEU A 234 ASP A 238 1 N ALA A 237 O LEU A 261 SHEET 5 B 7 ILE A 200 PHE A 205 1 N ILE A 203 O ILE A 236 SHEET 6 B 7 TYR A 136 PHE A 140 1 N TYR A 136 O ALA A 201 SHEET 7 B 7 THR A 178 LEU A 181 1 O LEU A 179 N ILE A 137 SHEET 1 C 2 VAL A 153 GLU A 154 0 SHEET 2 C 2 VAL A 164 PRO A 165 -1 O VAL A 164 N GLU A 154 SHEET 1 D 3 THR A 349 VAL A 353 0 SHEET 2 D 3 MET A 356 PHE A 360 -1 O PHE A 360 N THR A 349 SHEET 3 D 3 ALA A 402 PHE A 403 -1 O ALA A 402 N ILE A 357 LINK NA NA A1002 O PHE A 399 1555 1555 2.34 LINK NA NA A1002 O HOH A1068 1555 1555 2.46 LINK NA NA A1002 O HOH A1230 1555 1555 2.55 LINK NA NA A1002 O ASN A 211 1555 1555 2.20 LINK NA NA A1003 O LEU A 160 1555 1555 2.23 LINK NA NA A1003 O HOH A1053 1555 1555 2.38 LINK NA NA A1003 O HOH A1078 1555 1555 2.58 LINK NA NA A1003 O GLY A 158 1555 1555 2.45 CISPEP 1 ALA A 288 PRO A 289 0 0.42 CISPEP 2 GLY A 364 PRO A 365 0 -0.20 SITE 1 AC1 5 ASN A 211 PHE A 399 GLU A 400 HOH A1068 SITE 2 AC1 5 HOH A1230 SITE 1 AC2 6 GLY A 156 GLY A 158 LEU A 160 HOH A1053 SITE 2 AC2 6 HOH A1078 HOH A1210 SITE 1 AC3 12 SER A 116 GLY A 117 THR A 118 TYR A 144 SITE 2 AC3 12 HIS A 145 ASN A 211 ASP A 238 VAL A 240 SITE 3 AC3 12 MET A 241 GLY A 297 THR A 298 HOH A1071 SITE 1 AC4 4 ARG A 103 ALA A 104 GLU A 253 HOH A1214 CRYST1 180.674 180.674 117.700 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005535 0.003196 0.000000 0.00000 SCALE2 0.000000 0.006391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008496 0.00000 MASTER 395 0 4 20 16 0 8 6 0 0 0 33 END