HEADER TRANSFERASE 19-DEC-06 2E54 TITLE CRYSTAL STRUCTURE OF ACETYLORNITHINE AMINOTRANSFERASE FROM THERMOTOGA TITLE 2 MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLORNITHINE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACOAT; COMPND 5 EC: 2.6.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ARGD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MIZUTANI,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2E54 1 VERSN REVDAT 2 24-FEB-09 2E54 1 VERSN REVDAT 1 19-JUN-07 2E54 0 JRNL AUTH H.MIZUTANI,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF ACETYLORNITHINE AMINOTRANSFERASE FROM JRNL TITL 2 THERMOTOGA MARITIMA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1368180.570 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 66127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3333 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10275 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 563 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 516 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.70000 REMARK 3 B22 (A**2) : -4.39000 REMARK 3 B33 (A**2) : 1.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.82 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.960 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.420 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.840 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.770 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 65.49 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PLP.PARAM REMARK 3 PARAMETER FILE 5 : EGL.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : PLP.TOP REMARK 3 TOPOLOGY FILE 5 : EGL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-06. REMARK 100 THE RCSB ID CODE IS RCSB026236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66199 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : 0.34000 REMARK 200 FOR SHELL : 5.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1VEF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1M TRIS-HCL, 25%(W/V) PEG REMARK 280 3350, PH 8.5, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.61100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.84850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.61100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.84850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY THE REMARK 300 OPERATIONS: -X+1, -Y, Z+1. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.22200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1489 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1136 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 68 NE1 TRP A 68 CE2 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 37 62.96 66.67 REMARK 500 LYS A 59 -63.63 -108.38 REMARK 500 SER A 64 163.96 82.63 REMARK 500 THR A 83 -141.29 -128.13 REMARK 500 ALA A 91 -165.04 -112.13 REMARK 500 LEU A 149 -162.95 -100.81 REMARK 500 ILE A 186 89.84 56.14 REMARK 500 ALA A 239 -140.24 -168.50 REMARK 500 LYS A 240 -101.75 40.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1136 DISTANCE = 5.56 ANGSTROMS REMARK 525 HOH A1219 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A1339 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH A1358 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A1359 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A1362 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH A1394 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A1403 DISTANCE = 5.62 ANGSTROMS REMARK 525 HOH A1420 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A1434 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A1441 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A1460 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A1473 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH A1483 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A1489 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH A1499 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH A1500 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH A1502 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A1503 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A1505 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1510 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A1515 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A1516 DISTANCE = 6.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1004 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 310 O REMARK 620 2 TYR A 313 O 93.2 REMARK 620 3 VAL A 316 O 106.6 91.6 REMARK 620 4 HOH A1071 O 92.3 168.4 96.7 REMARK 620 5 HOH A1073 O 86.5 84.3 166.5 85.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1005 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1043 O REMARK 620 2 HOH A1203 O 93.2 REMARK 620 3 HOH A1071 O 73.3 166.2 REMARK 620 4 HOH A1392 O 89.7 83.3 93.4 REMARK 620 5 HOH A1474 O 162.1 104.7 88.9 93.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TMA001001785.1 RELATED DB: TARGETDB DBREF 2E54 A 1 385 UNP Q9X2A5 ARGD_THEMA 1 385 SEQRES 1 A 385 MET TYR LEU MET ASN THR TYR SER ARG PHE PRO ALA THR SEQRES 2 A 385 PHE VAL TYR GLY LYS GLY SER TRP ILE TYR ASP GLU LYS SEQRES 3 A 385 GLY ASN ALA TYR LEU ASP PHE THR SER GLY ILE ALA VAL SEQRES 4 A 385 ASN VAL LEU GLY HIS SER HIS PRO ARG LEU VAL GLU ALA SEQRES 5 A 385 ILE LYS ASP GLN ALA GLU LYS LEU ILE HIS CYS SER ASN SEQRES 6 A 385 LEU PHE TRP ASN ARG PRO GLN MET GLU LEU ALA GLU LEU SEQRES 7 A 385 LEU SER LYS ASN THR PHE GLY GLY LYS VAL PHE PHE ALA SEQRES 8 A 385 ASN THR GLY THR GLU ALA ASN GLU ALA ALA ILE LYS ILE SEQRES 9 A 385 ALA ARG LYS TYR GLY LYS LYS LYS SER GLU LYS LYS TYR SEQRES 10 A 385 ARG ILE LEU SER ALA HIS ASN SER PHE HIS GLY ARG THR SEQRES 11 A 385 LEU GLY SER LEU THR ALA THR GLY GLN PRO LYS TYR GLN SEQRES 12 A 385 LYS PRO PHE GLU PRO LEU VAL PRO GLY PHE GLU TYR PHE SEQRES 13 A 385 GLU PHE ASN ASN VAL GLU ASP LEU ARG ARG LYS MET SER SEQRES 14 A 385 GLU ASP VAL CYS ALA VAL PHE LEU GLU PRO ILE GLN GLY SEQRES 15 A 385 GLU SER GLY ILE VAL PRO ALA THR LYS GLU PHE LEU GLU SEQRES 16 A 385 GLU ALA ARG LYS LEU CYS ASP GLU TYR ASP ALA LEU LEU SEQRES 17 A 385 VAL PHE ASP GLU VAL GLN CYS GLY MET GLY ARG THR GLY SEQRES 18 A 385 LYS LEU PHE ALA TYR GLN LYS TYR GLY VAL VAL PRO ASP SEQRES 19 A 385 VAL LEU THR THR ALA LYS GLY LEU GLY GLY GLY VAL PRO SEQRES 20 A 385 ILE GLY ALA VAL ILE VAL ASN GLU ARG ALA ASN VAL LEU SEQRES 21 A 385 GLU PRO GLY ASP HIS GLY THR THR PHE GLY GLY ASN PRO SEQRES 22 A 385 LEU ALA CYS ARG ALA GLY VAL THR VAL ILE LYS GLU LEU SEQRES 23 A 385 THR LYS GLU GLY PHE LEU GLU GLU VAL GLU GLU LYS GLY SEQRES 24 A 385 ASN TYR LEU MET LYS LYS LEU GLN GLU MET LYS GLU GLU SEQRES 25 A 385 TYR ASP VAL VAL ALA ASP VAL ARG GLY MET GLY LEU MET SEQRES 26 A 385 ILE GLY ILE GLN PHE ARG GLU GLU VAL SER ASN ARG GLU SEQRES 27 A 385 VAL ALA THR LYS CYS PHE GLU ASN LYS LEU LEU VAL VAL SEQRES 28 A 385 PRO ALA GLY ASN ASN THR ILE ARG PHE LEU PRO PRO LEU SEQRES 29 A 385 THR VAL GLU TYR GLY GLU ILE ASP LEU ALA VAL GLU THR SEQRES 30 A 385 LEU LYS LYS VAL LEU GLN GLY ILE HET NA A1004 1 HET NA A1005 1 HET PLP A1001 16 HET EDO A1002 4 HET EDO A1003 4 HETNAM NA SODIUM ION HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NA 2(NA 1+) FORMUL 4 PLP C8 H10 N O6 P FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *516(H2 O) HELIX 1 1 THR A 34 VAL A 39 1 6 HELIX 2 2 HIS A 46 GLU A 58 1 13 HELIX 3 3 ASN A 69 ASN A 82 1 14 HELIX 4 4 THR A 93 LYS A 111 1 19 HELIX 5 5 THR A 130 THR A 137 1 8 HELIX 6 6 GLN A 139 LYS A 144 1 6 HELIX 7 7 PRO A 145 GLU A 147 5 3 HELIX 8 8 ASN A 160 MET A 168 1 9 HELIX 9 9 THR A 190 TYR A 204 1 15 HELIX 10 10 PHE A 224 GLY A 230 1 7 HELIX 11 11 ALA A 239 GLY A 244 5 6 HELIX 12 12 ASN A 272 THR A 287 1 16 HELIX 13 13 GLY A 290 TYR A 313 1 24 HELIX 14 14 SER A 335 ASN A 346 1 12 HELIX 15 15 GLU A 367 GLN A 383 1 17 SHEET 1 A 4 PHE A 14 LYS A 18 0 SHEET 2 A 4 TRP A 21 ASP A 24 -1 O TYR A 23 N TYR A 16 SHEET 3 A 4 ALA A 29 ASP A 32 -1 O TYR A 30 N ILE A 22 SHEET 4 A 4 LEU A 348 LEU A 349 1 O LEU A 349 N LEU A 31 SHEET 1 B 7 LYS A 87 ALA A 91 0 SHEET 2 B 7 GLY A 249 VAL A 253 -1 O VAL A 253 N LYS A 87 SHEET 3 B 7 VAL A 235 THR A 238 -1 N THR A 238 O ALA A 250 SHEET 4 B 7 LEU A 207 ASP A 211 1 N PHE A 210 O VAL A 235 SHEET 5 B 7 VAL A 172 LEU A 177 1 N VAL A 175 O VAL A 209 SHEET 6 B 7 ARG A 118 ALA A 122 1 N LEU A 120 O PHE A 176 SHEET 7 B 7 PHE A 153 PHE A 156 1 O GLU A 154 N ILE A 119 SHEET 1 C 2 ILE A 180 GLN A 181 0 SHEET 2 C 2 VAL A 187 PRO A 188 -1 O VAL A 187 N GLN A 181 SHEET 1 D 4 VAL A 316 MET A 322 0 SHEET 2 D 4 MET A 325 PHE A 330 -1 O GLY A 327 N ARG A 320 SHEET 3 D 4 THR A 357 PHE A 360 -1 O PHE A 360 N ILE A 326 SHEET 4 D 4 VAL A 351 ALA A 353 -1 N VAL A 351 O ARG A 359 LINK NA NA A1004 O LYS A 310 1555 1555 2.24 LINK NA NA A1004 O TYR A 313 1555 1555 2.39 LINK NA NA A1004 O VAL A 316 1555 1555 2.36 LINK NA NA A1004 O HOH A1071 1555 1555 2.44 LINK NA NA A1004 O HOH A1073 1555 1555 2.43 LINK NA NA A1005 O HOH A1043 1555 1555 2.40 LINK NA NA A1005 O HOH A1203 1555 1555 2.33 LINK NA NA A1005 O HOH A1071 1555 1555 2.31 LINK NA NA A1005 O HOH A1392 1555 4457 2.35 LINK NA NA A1005 O HOH A1474 1555 4457 2.35 CISPEP 1 GLU A 147 PRO A 148 0 0.08 SITE 1 AC1 7 LYS A 310 TYR A 313 VAL A 316 NA A1005 SITE 2 AC1 7 HOH A1043 HOH A1071 HOH A1073 SITE 1 AC2 7 NA A1004 HOH A1043 HOH A1071 HOH A1073 SITE 2 AC2 7 HOH A1203 HOH A1392 HOH A1474 SITE 1 AC3 18 THR A 93 GLY A 94 THR A 95 PHE A 126 SITE 2 AC3 18 HIS A 127 GLU A 178 GLU A 183 ASP A 211 SITE 3 AC3 18 VAL A 213 GLN A 214 LYS A 240 THR A 268 SITE 4 AC3 18 HOH A1024 HOH A1029 HOH A1030 HOH A1037 SITE 5 AC3 18 HOH A1040 HOH A1075 SITE 1 AC4 6 GLU A 294 LYS A 298 LEU A 364 THR A 365 SITE 2 AC4 6 HOH A1173 HOH A1336 SITE 1 AC5 5 ASP A 32 SER A 35 ASN A 40 HIS A 44 SITE 2 AC5 5 PRO A 363 CRYST1 67.222 115.697 52.448 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014876 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019067 0.00000 MASTER 365 0 5 15 17 0 13 6 0 0 0 30 END