HEADER TRANSFERASE 18-OCT-06 2E16 TITLE CRYSTAL STRUCTURE OF GLU140 TO ARG MUTANT OF DIPHTHINE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE DIPHTHINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIPHTHAMIDE BIOSYNTHESIS METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.98; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 2 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 3 INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MIZUTANI,Y.MATSUURA,N.KUNISHIMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2E16 1 VERSN REVDAT 2 24-FEB-09 2E16 1 VERSN REVDAT 1 24-APR-07 2E16 0 JRNL AUTH H.MIZUTANI,Y.MATSUURA,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF DIPHTHINE SYNTHASE FROM PYROCOCCUS JRNL TITL 2 HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2315586.250 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 51831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2583 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7973 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 409 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4176 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 374 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.80 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.070 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.020 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.040 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 56.15 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : SAH.PARAM REMARK 3 PARAMETER FILE 5 : GOL.PARAM REMARK 3 PARAMETER FILE 6 : MES.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : SAH.TOP REMARK 3 TOPOLOGY FILE 5 : GOL.TOP REMARK 3 TOPOLOGY FILE 6 : MES.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-06. REMARK 100 THE RCSB ID CODE IS RCSB026096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51865 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 11.300 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : 0.33100 REMARK 200 FOR SHELL : 6.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1WNG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.1M MES, 0.01M REMARK 280 CO CHLORIDE, PH 6.5, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.53800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.49600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.49600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.26900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.49600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.49600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.80700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.49600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.49600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.26900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.49600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.49600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.80700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.53800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -205.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -104.99200 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 104.99200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 137.07600 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 143 NE1 TRP A 143 CE2 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 11 -50.20 -128.45 REMARK 500 THR A 146 -4.33 -140.49 REMARK 500 TYR B 11 -51.01 -131.47 REMARK 500 THR B 146 14.64 -140.34 REMARK 500 LYS B 169 77.77 -102.79 REMARK 500 ALA B 170 -79.19 -29.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1646 DISTANCE = 5.46 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WNG RELATED DB: PDB REMARK 900 RELATED ID: 2E15 RELATED DB: PDB REMARK 900 RELATED ID: 2E17 RELATED DB: PDB REMARK 900 RELATED ID: PHO001000725.21 RELATED DB: TARGETDB DBREF 2E16 A 1 265 UNP O58456 DPHB_PYRHO 1 265 DBREF 2E16 B 1 265 UNP O58456 DPHB_PYRHO 1 265 SEQADV 2E16 ARG A 140 UNP O58456 GLU 140 ENGINEERED SEQADV 2E16 ARG B 140 UNP O58456 GLU 140 ENGINEERED SEQRES 1 A 265 MET VAL LEU TYR PHE ILE GLY LEU GLY LEU TYR ASP GLU SEQRES 2 A 265 ARG ASP ILE THR VAL LYS GLY LEU GLU ILE ALA LYS LYS SEQRES 3 A 265 CYS ASP TYR VAL PHE ALA GLU PHE TYR THR SER LEU MET SEQRES 4 A 265 ALA GLY THR THR LEU GLY ARG ILE GLN LYS LEU ILE GLY SEQRES 5 A 265 LYS GLU ILE ARG VAL LEU SER ARG GLU ASP VAL GLU LEU SEQRES 6 A 265 ASN PHE GLU ASN ILE VAL LEU PRO LEU ALA LYS GLU ASN SEQRES 7 A 265 ASP VAL ALA PHE LEU THR PRO GLY ASP PRO LEU VAL ALA SEQRES 8 A 265 THR THR HIS ALA GLU LEU ARG ILE ARG ALA LYS ARG ALA SEQRES 9 A 265 GLY VAL GLU SER TYR VAL ILE HIS ALA PRO SER ILE TYR SEQRES 10 A 265 SER ALA VAL GLY ILE THR GLY LEU HIS ILE TYR LYS PHE SEQRES 11 A 265 GLY LYS SER ALA THR VAL ALA TYR PRO ARG GLY ASN TRP SEQRES 12 A 265 PHE PRO THR SER TYR TYR ASP VAL ILE LYS GLU ASN ALA SEQRES 13 A 265 GLU ARG GLY LEU HIS THR LEU LEU PHE LEU ASP ILE LYS SEQRES 14 A 265 ALA GLU LYS ARG MET TYR MET THR ALA ASN GLU ALA MET SEQRES 15 A 265 GLU LEU LEU LEU LYS VAL GLU ASP MET LYS LYS GLY GLY SEQRES 16 A 265 VAL PHE THR ASP ASP THR LEU VAL VAL VAL LEU ALA ARG SEQRES 17 A 265 ALA GLY SER LEU ASN PRO THR ILE ARG ALA GLY TYR VAL SEQRES 18 A 265 LYS ASP LEU ILE ARG GLU ASP PHE GLY ASP PRO PRO HIS SEQRES 19 A 265 ILE LEU ILE VAL PRO GLY LYS LEU HIS ILE VAL GLU ALA SEQRES 20 A 265 GLU TYR LEU VAL GLU ILE ALA GLY ALA PRO ARG GLU ILE SEQRES 21 A 265 LEU ARG VAL ASN VAL SEQRES 1 B 265 MET VAL LEU TYR PHE ILE GLY LEU GLY LEU TYR ASP GLU SEQRES 2 B 265 ARG ASP ILE THR VAL LYS GLY LEU GLU ILE ALA LYS LYS SEQRES 3 B 265 CYS ASP TYR VAL PHE ALA GLU PHE TYR THR SER LEU MET SEQRES 4 B 265 ALA GLY THR THR LEU GLY ARG ILE GLN LYS LEU ILE GLY SEQRES 5 B 265 LYS GLU ILE ARG VAL LEU SER ARG GLU ASP VAL GLU LEU SEQRES 6 B 265 ASN PHE GLU ASN ILE VAL LEU PRO LEU ALA LYS GLU ASN SEQRES 7 B 265 ASP VAL ALA PHE LEU THR PRO GLY ASP PRO LEU VAL ALA SEQRES 8 B 265 THR THR HIS ALA GLU LEU ARG ILE ARG ALA LYS ARG ALA SEQRES 9 B 265 GLY VAL GLU SER TYR VAL ILE HIS ALA PRO SER ILE TYR SEQRES 10 B 265 SER ALA VAL GLY ILE THR GLY LEU HIS ILE TYR LYS PHE SEQRES 11 B 265 GLY LYS SER ALA THR VAL ALA TYR PRO ARG GLY ASN TRP SEQRES 12 B 265 PHE PRO THR SER TYR TYR ASP VAL ILE LYS GLU ASN ALA SEQRES 13 B 265 GLU ARG GLY LEU HIS THR LEU LEU PHE LEU ASP ILE LYS SEQRES 14 B 265 ALA GLU LYS ARG MET TYR MET THR ALA ASN GLU ALA MET SEQRES 15 B 265 GLU LEU LEU LEU LYS VAL GLU ASP MET LYS LYS GLY GLY SEQRES 16 B 265 VAL PHE THR ASP ASP THR LEU VAL VAL VAL LEU ALA ARG SEQRES 17 B 265 ALA GLY SER LEU ASN PRO THR ILE ARG ALA GLY TYR VAL SEQRES 18 B 265 LYS ASP LEU ILE ARG GLU ASP PHE GLY ASP PRO PRO HIS SEQRES 19 B 265 ILE LEU ILE VAL PRO GLY LYS LEU HIS ILE VAL GLU ALA SEQRES 20 B 265 GLU TYR LEU VAL GLU ILE ALA GLY ALA PRO ARG GLU ILE SEQRES 21 B 265 LEU ARG VAL ASN VAL HET SO4 B1301 5 HET SO4 B1302 5 HET SO4 A1303 5 HET SO4 A1304 5 HET SO4 B1305 5 HET SO4 A1306 5 HET SAH A1300 26 HET MES A1501 12 HET MES B1502 12 HET GOL B1401 6 HET GOL A1402 6 HETNAM SO4 SULFATE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 SAH C14 H20 N6 O5 S FORMUL 10 MES 2(C6 H13 N O4 S) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 14 HOH *374(H2 O) HELIX 1 1 ASP A 12 ILE A 16 5 5 HELIX 2 2 THR A 17 LYS A 26 1 10 HELIX 3 3 THR A 43 GLY A 52 1 10 HELIX 4 4 SER A 59 VAL A 71 1 13 HELIX 5 5 VAL A 71 LYS A 76 1 6 HELIX 6 6 HIS A 94 ALA A 104 1 11 HELIX 7 7 SER A 115 VAL A 120 1 6 HELIX 8 8 GLY A 121 GLY A 124 5 4 HELIX 9 9 HIS A 126 PHE A 130 5 5 HELIX 10 10 THR A 146 ARG A 158 1 13 HELIX 11 11 ALA A 170 ARG A 173 5 4 HELIX 12 12 THR A 177 LYS A 193 1 17 HELIX 13 13 VAL A 221 ILE A 225 1 5 HELIX 14 14 HIS A 243 ILE A 253 1 11 HELIX 15 15 PRO A 257 ARG A 262 5 6 HELIX 16 16 ASP B 12 ILE B 16 5 5 HELIX 17 17 THR B 17 LYS B 26 1 10 HELIX 18 18 THR B 43 GLY B 52 1 10 HELIX 19 19 SER B 59 VAL B 71 1 13 HELIX 20 20 VAL B 71 ASN B 78 1 8 HELIX 21 21 ALA B 95 ALA B 104 1 10 HELIX 22 22 SER B 115 VAL B 120 1 6 HELIX 23 23 GLY B 121 GLY B 124 5 4 HELIX 24 24 HIS B 126 PHE B 130 5 5 HELIX 25 25 THR B 146 ARG B 158 1 13 HELIX 26 26 THR B 177 LYS B 193 1 17 HELIX 27 27 VAL B 221 ILE B 225 1 5 HELIX 28 28 HIS B 243 ILE B 253 1 11 HELIX 29 29 GLU B 259 ASN B 264 1 6 SHEET 1 A 5 ILE A 55 LEU A 58 0 SHEET 2 A 5 TYR A 29 GLU A 33 1 N ALA A 32 O LEU A 58 SHEET 3 A 5 ASP A 79 THR A 84 1 O ALA A 81 N PHE A 31 SHEET 4 A 5 VAL A 2 GLY A 7 1 N VAL A 2 O VAL A 80 SHEET 5 A 5 SER A 108 ILE A 111 1 O ILE A 111 N PHE A 5 SHEET 1 B 5 ALA A 134 VAL A 136 0 SHEET 2 B 5 THR A 162 LEU A 166 1 O PHE A 165 N ALA A 134 SHEET 3 B 5 HIS A 234 VAL A 238 -1 O LEU A 236 N LEU A 164 SHEET 4 B 5 LEU A 202 ALA A 207 -1 N VAL A 204 O ILE A 237 SHEET 5 B 5 THR A 215 TYR A 220 -1 O ARG A 217 N VAL A 205 SHEET 1 C 2 ILE A 168 LYS A 169 0 SHEET 2 C 2 MET A 174 TYR A 175 -1 O MET A 174 N LYS A 169 SHEET 1 D 5 ILE B 55 LEU B 58 0 SHEET 2 D 5 TYR B 29 GLU B 33 1 N ALA B 32 O LEU B 58 SHEET 3 D 5 ASP B 79 THR B 84 1 O ALA B 81 N PHE B 31 SHEET 4 D 5 VAL B 2 GLY B 7 1 N TYR B 4 O PHE B 82 SHEET 5 D 5 GLU B 107 ILE B 111 1 O ILE B 111 N PHE B 5 SHEET 1 E 5 ALA B 134 VAL B 136 0 SHEET 2 E 5 THR B 162 LEU B 166 1 O PHE B 165 N VAL B 136 SHEET 3 E 5 HIS B 234 VAL B 238 -1 O LEU B 236 N LEU B 164 SHEET 4 E 5 LEU B 202 ALA B 207 -1 N VAL B 204 O ILE B 237 SHEET 5 E 5 THR B 215 TYR B 220 -1 O ARG B 217 N VAL B 205 SHEET 1 F 2 ILE B 168 LYS B 169 0 SHEET 2 F 2 MET B 174 TYR B 175 -1 O MET B 174 N LYS B 169 CISPEP 1 PRO A 232 PRO A 233 0 0.05 CISPEP 2 PRO B 232 PRO B 233 0 0.14 SITE 1 AC1 5 ARG B 46 HIS B 126 TYR B 128 HIS B 243 SITE 2 AC1 5 HOH B1583 SITE 1 AC2 6 ARG B 46 LYS B 129 LYS B 241 HIS B 243 SITE 2 AC2 6 HOH B1547 HOH B1575 SITE 1 AC3 4 ARG A 60 ALA A 91 THR A 93 HOH A1532 SITE 1 AC4 3 SER A 211 LEU A 212 ASN A 213 SITE 1 AC5 2 PRO B 257 ARG B 258 SITE 1 AC6 3 PRO A 257 ARG A 258 HOH A1601 SITE 1 AC7 19 LEU A 10 THR A 36 SER A 37 GLY A 86 SITE 2 AC7 19 ASP A 87 VAL A 90 SER A 115 ILE A 116 SITE 3 AC7 19 PHE A 165 LEU A 166 LEU A 206 ARG A 208 SITE 4 AC7 19 ALA A 209 PRO A 233 HIS A 234 ILE A 235 SITE 5 AC7 19 HOH A1508 HOH A1559 HOH A1611 SITE 1 AC8 9 PHE A 34 MET A 39 THR A 42 THR A 43 SITE 2 AC8 9 LEU A 44 ILE A 47 VAL A 57 HOH A1635 SITE 3 AC8 9 HOH A1684 SITE 1 AC9 4 ASP B 200 TYR B 220 LYS B 222 GLU B 259 SITE 1 BC1 7 TRP A 143 LEU B 38 MET B 39 THR B 42 SITE 2 BC1 7 LEU B 44 ARG B 173 HOH B1676 SITE 1 BC2 2 THR A 43 ARG A 46 CRYST1 104.992 104.992 137.076 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007295 0.00000 MASTER 361 0 11 29 24 0 20 6 0 0 0 42 END