HEADER RNA BINDING PROTEIN 10-SEP-06 2DYD TITLE SOLUTION STRUCTURE OF THE PABC DOMAIN FROM TRITICUM TITLE 2 AEVESTIUM POLY(A)-BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(A)-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRITICUM AESTIVUM; SOURCE 3 ORGANISM_COMMON: BREAD WHEAT; SOURCE 4 ORGANISM_TAXID: 4565; SOURCE 5 GENE: PABP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS ALPHA HELICAL PROTEIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR N.SIDDIQUI REVDAT 2 24-FEB-09 2DYD 1 VERSN REVDAT 1 22-MAY-07 2DYD 0 JRNL AUTH N.SIDDIQUI,M.J.OSBORNE,D.R.GALLIE,K.GEHRING JRNL TITL SOLUTION STRUCTURE OF THE PABC DOMAIN FROM WHEAT JRNL TITL 2 POLY (A)-BINDING PROTEIN: AN INSIGHT INTO RNA JRNL TITL 3 METABOLIC AND TRANSLATIONAL CONTROL IN PLANTS JRNL REF BIOCHEMISTRY V. 46 4221 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17358048 JRNL DOI 10.1021/BI061986D REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DYD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-SEP-06. REMARK 100 THE RCSB ID CODE IS RCSB025996. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1-2MM PROTEIN, 15N LABELED, REMARK 210 50MM PHOSPHATE BUFFER, 150MM REMARK 210 NACL, 1MM NAN3; 90% H2O, 10% REMARK 210 D2O; 1-2MM PROTEIN, 15N/13C REMARK 210 LABELED, 50MM PHOSPHATE REMARK 210 BUFFER, 150MM NACL, 1MM NAN3; REMARK 210 90% H2O, 10% D2O; 1-2MM REMARK 210 PROTEIN, 50MM PHOSPHATE REMARK 210 BUFFER, 150MM NACL, 1MM NAN3; REMARK 210 90% H2O, 10% D2O; 1-2MM REMARK 210 PROTEIN, 50MM PHOSPHATE REMARK 210 BUFFER, 150MM NACL, 1MM; 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 3D_15N- REMARK 210 SEPARATED_NOESY, HNCACB, REMARK 210 CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 31 N ASP A 35 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 18 153.63 -43.58 REMARK 500 1 ARG A 23 -86.05 -22.55 REMARK 500 1 ASP A 35 83.57 -28.61 REMARK 500 1 LEU A 37 -162.07 -112.56 REMARK 500 1 HIS A 39 -28.86 -37.85 REMARK 500 1 ASP A 40 -72.95 -38.92 REMARK 500 1 LEU A 61 36.42 -92.11 REMARK 500 1 GLU A 62 -44.48 -155.63 REMARK 500 1 GLN A 83 179.51 52.18 REMARK 500 2 PRO A 2 175.77 -52.67 REMARK 500 2 PRO A 6 -74.97 -59.65 REMARK 500 2 ARG A 23 -84.97 -19.95 REMARK 500 2 ASP A 35 86.76 -32.24 REMARK 500 2 LEU A 37 -159.37 -103.66 REMARK 500 2 HIS A 39 -33.25 -33.62 REMARK 500 2 ASP A 40 -78.93 -40.47 REMARK 500 2 GLU A 62 -55.07 -145.21 REMARK 500 2 ALA A 81 -179.16 51.05 REMARK 500 2 GLN A 83 42.75 -155.12 REMARK 500 3 LEU A 3 143.25 63.44 REMARK 500 3 ASN A 16 49.84 -90.67 REMARK 500 3 PRO A 18 161.69 -47.01 REMARK 500 3 ARG A 23 -84.63 -20.00 REMARK 500 3 ASP A 35 91.02 -43.64 REMARK 500 3 HIS A 39 -31.17 -35.45 REMARK 500 3 ASP A 40 -77.17 -38.85 REMARK 500 3 LEU A 61 37.87 -93.87 REMARK 500 3 GLU A 62 -46.49 -154.97 REMARK 500 3 GLN A 82 -61.27 -91.22 REMARK 500 3 GLN A 83 -173.94 52.10 REMARK 500 3 HIS A 84 -76.07 -111.99 REMARK 500 4 PRO A 2 -178.42 -52.39 REMARK 500 4 LEU A 3 46.71 -95.51 REMARK 500 4 ALA A 11 88.51 60.16 REMARK 500 4 ASN A 16 86.55 50.28 REMARK 500 4 ARG A 23 -87.59 -19.03 REMARK 500 4 ASP A 35 84.25 -29.04 REMARK 500 4 LEU A 37 -157.68 -100.91 REMARK 500 4 HIS A 39 -31.84 -35.55 REMARK 500 4 ASP A 40 -72.34 -39.21 REMARK 500 4 MET A 52 -74.40 -72.77 REMARK 500 4 LEU A 61 37.93 -97.99 REMARK 500 4 GLU A 62 -49.12 -155.09 REMARK 500 5 LEU A 3 -173.16 60.71 REMARK 500 5 ILE A 7 99.35 -67.21 REMARK 500 5 ASN A 16 37.82 37.61 REMARK 500 5 ARG A 23 -83.81 -20.28 REMARK 500 5 ASP A 35 91.76 -44.37 REMARK 500 5 HIS A 39 -31.02 -35.75 REMARK 500 5 ASP A 40 -77.12 -39.31 REMARK 500 5 MET A 52 -72.63 -75.22 REMARK 500 5 LEU A 61 39.66 -96.01 REMARK 500 5 GLU A 62 -44.83 -155.17 REMARK 500 5 SER A 80 15.90 -148.78 REMARK 500 5 ALA A 81 168.41 55.90 REMARK 500 5 GLN A 83 -69.20 -131.07 REMARK 500 6 LEU A 3 94.06 59.80 REMARK 500 6 ALA A 11 -34.56 -162.41 REMARK 500 6 ARG A 23 -83.22 -21.23 REMARK 500 6 ASP A 35 86.20 -31.99 REMARK 500 6 HIS A 39 92.98 -16.60 REMARK 500 6 ASP A 40 -75.05 -176.52 REMARK 500 6 LEU A 61 37.78 -97.80 REMARK 500 6 GLU A 62 -47.28 -155.40 REMARK 500 6 SER A 80 -168.05 -115.93 REMARK 500 6 HIS A 84 87.05 61.35 REMARK 500 7 LEU A 3 -46.23 -131.43 REMARK 500 7 ILE A 7 36.13 -95.22 REMARK 500 7 ALA A 11 142.95 62.97 REMARK 500 7 PRO A 18 161.36 -48.51 REMARK 500 7 ARG A 23 -87.44 -20.52 REMARK 500 7 ASP A 35 78.77 -22.84 REMARK 500 7 LEU A 37 -159.03 -106.47 REMARK 500 7 MET A 52 -78.88 -69.98 REMARK 500 7 GLU A 62 -46.57 -157.98 REMARK 500 7 LEU A 78 -74.41 -75.93 REMARK 500 7 SER A 80 -166.32 -116.73 REMARK 500 7 GLN A 82 -54.52 -149.32 REMARK 500 8 ALA A 11 69.85 -164.98 REMARK 500 8 PRO A 18 152.62 -44.79 REMARK 500 8 ARG A 23 -88.77 -21.22 REMARK 500 8 ASP A 35 77.59 -14.89 REMARK 500 8 LEU A 37 -158.92 -89.71 REMARK 500 8 ASP A 40 -82.17 -59.40 REMARK 500 8 MET A 52 -73.49 -54.43 REMARK 500 8 LEU A 61 35.96 -95.70 REMARK 500 8 GLU A 62 -49.24 -155.27 REMARK 500 8 GLN A 83 -64.90 -103.79 REMARK 500 9 PRO A 6 -71.62 -58.38 REMARK 500 9 ILE A 7 85.59 -64.44 REMARK 500 9 ARG A 23 -89.91 -19.76 REMARK 500 9 ASP A 35 75.90 -16.55 REMARK 500 9 HIS A 39 94.62 -39.79 REMARK 500 9 ASP A 40 -64.39 -175.58 REMARK 500 9 MET A 52 -75.85 -69.86 REMARK 500 9 LEU A 61 40.42 -102.12 REMARK 500 9 GLU A 62 -44.85 -156.29 REMARK 500 9 ALA A 81 88.74 62.77 REMARK 500 9 HIS A 84 103.28 -176.75 REMARK 500 10 LEU A 3 82.81 60.30 REMARK 500 10 ILE A 7 84.13 -62.32 REMARK 500 10 ALA A 11 -34.74 -164.46 REMARK 500 10 ARG A 23 -89.49 -20.26 REMARK 500 10 ASP A 35 91.65 -44.08 REMARK 500 10 LEU A 37 -165.91 -117.06 REMARK 500 10 HIS A 39 86.48 -47.19 REMARK 500 10 ASP A 40 -57.28 176.78 REMARK 500 10 MET A 52 -74.74 -69.54 REMARK 500 10 GLU A 62 -44.33 -157.84 REMARK 500 10 LEU A 78 -73.04 -76.30 REMARK 500 10 HIS A 84 167.27 60.46 REMARK 500 11 ILE A 7 81.23 -63.94 REMARK 500 11 ARG A 23 -86.95 -20.90 REMARK 500 11 ASP A 35 -83.06 14.06 REMARK 500 11 GLN A 36 -6.25 83.43 REMARK 500 11 HIS A 39 -33.76 -32.96 REMARK 500 11 ASP A 40 -77.80 -40.92 REMARK 500 11 MET A 52 -74.91 -67.04 REMARK 500 11 GLU A 62 -54.17 -151.90 REMARK 500 11 LEU A 78 -60.91 -92.63 REMARK 500 11 GLN A 82 53.29 -90.31 REMARK 500 11 HIS A 84 88.08 59.45 REMARK 500 12 ALA A 11 91.80 -66.12 REMARK 500 12 ASN A 16 96.29 -61.99 REMARK 500 12 ARG A 23 -87.30 -19.70 REMARK 500 12 ASP A 35 89.05 -39.71 REMARK 500 12 HIS A 39 -31.24 -37.28 REMARK 500 12 ASP A 40 -72.67 -39.75 REMARK 500 12 MET A 52 -70.59 -70.02 REMARK 500 12 GLU A 62 -54.55 -147.99 REMARK 500 12 LEU A 78 -62.12 -90.72 REMARK 500 13 PRO A 18 152.35 -47.72 REMARK 500 13 ARG A 23 -89.10 -20.55 REMARK 500 13 ASP A 35 76.95 -13.38 REMARK 500 13 LEU A 37 -151.75 -99.35 REMARK 500 13 MET A 52 -76.87 -56.66 REMARK 500 13 LEU A 61 35.41 -97.39 REMARK 500 13 GLU A 62 -44.93 -157.91 REMARK 500 13 LEU A 78 -72.16 -76.57 REMARK 500 13 HIS A 84 77.91 -162.27 REMARK 500 14 PRO A 6 -74.21 -60.08 REMARK 500 14 ASN A 16 -166.58 -124.47 REMARK 500 14 ARG A 23 -88.48 -21.39 REMARK 500 14 ASP A 35 93.73 -45.77 REMARK 500 14 HIS A 39 88.23 -37.60 REMARK 500 14 ASP A 40 -59.61 178.19 REMARK 500 14 MET A 52 -72.83 -70.73 REMARK 500 14 GLU A 62 -43.99 -155.54 REMARK 500 14 GLN A 82 -70.42 -70.84 REMARK 500 15 ILE A 7 158.65 59.13 REMARK 500 15 ARG A 23 -83.28 -21.07 REMARK 500 15 ASP A 35 86.80 -33.23 REMARK 500 15 LEU A 37 -160.02 -111.05 REMARK 500 15 HIS A 39 -32.83 -34.04 REMARK 500 15 ASP A 40 -74.61 -38.16 REMARK 500 15 LEU A 61 37.20 -94.87 REMARK 500 15 GLU A 62 -46.76 -154.62 REMARK 500 15 ALA A 81 -167.84 49.35 REMARK 500 15 HIS A 84 97.17 59.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 2DYD A 6 85 UNP P93616 P93616_WHEAT 552 631 SEQADV 2DYD GLY A 1 UNP P93616 CLONING ARTIFACT SEQADV 2DYD PRO A 2 UNP P93616 CLONING ARTIFACT SEQADV 2DYD LEU A 3 UNP P93616 CLONING ARTIFACT SEQADV 2DYD GLY A 4 UNP P93616 CLONING ARTIFACT SEQADV 2DYD SER A 5 UNP P93616 CLONING ARTIFACT SEQRES 1 A 85 GLY PRO LEU GLY SER PRO ILE GLY ALA LEU ALA SER ALA SEQRES 2 A 85 LEU ALA ASN SER PRO PRO GLU THR GLN ARG MET MET LEU SEQRES 3 A 85 GLY GLU ASN LEU TYR PRO LEU VAL ASP GLN LEU GLU HIS SEQRES 4 A 85 ASP GLN ALA ALA LYS VAL THR GLY MET LEU LEU GLU MET SEQRES 5 A 85 ASP GLN THR GLU VAL LEU HIS LEU LEU GLU SER PRO ASP SEQRES 6 A 85 ALA LEU LYS ALA LYS VAL ALA GLU ALA MET GLU VAL LEU SEQRES 7 A 85 ARG SER ALA GLN GLN HIS THR HELIX 1 1 ALA A 11 ASN A 16 1 6 HELIX 2 2 PRO A 18 ASP A 35 1 18 HELIX 3 3 GLU A 38 ASP A 53 1 16 HELIX 4 4 ASP A 53 LEU A 61 1 9 HELIX 5 5 PRO A 64 ARG A 79 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 248 0 0 5 0 0 0 6 0 0 0 7 END