HEADER LIGASE 12-JUL-06 2DTI TITLE CRYSTAL STRUCTURE OF BIOTIN PROTEIN LIGASE FROM PYROCOCCUS HORIKOSHII TITLE 2 OT3 IN COMPLEX WITH BIOTINYL-5'-AMP, PYROPHOSPHATE AND MN(2+) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 235AA LONG HYPOTHETICAL BIOTIN-[ACETYL-COA-CARBOXYLASE] COMPND 3 LIGASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: BIOTIN PROTEIN LIGASE; COMPND 6 EC: 6.3.4.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: BIRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: (DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11A KEYWDS BIOTIN BIOSYNTHESIS, DIMER, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.BAGAUTDINOV,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2DTI 1 VERSN REVDAT 2 24-FEB-09 2DTI 1 VERSN REVDAT 1 12-JAN-07 2DTI 0 JRNL AUTH B.BAGAUTDINOV,N.KUNISHIMA JRNL TITL LIGAND STRUCTURES OF BIOTIN PROTEIN LIGASE FROM PYROCOCCUS JRNL TITL 2 HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 20276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1010 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 107 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.034 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : -16.16000 REMARK 3 B33 (A**2) : 16.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 9.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.91 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DTI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-06. REMARK 100 THE RCSB ID CODE IS RCSB025824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20276 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.23700 REMARK 200 R SYM FOR SHELL (I) : 0.16500 REMARK 200 FOR SHELL : 7.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2DKG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 20K, ACETATE, NAOH, ATP, BIOTIN, REMARK 280 MN(2+) , PH 5.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.31400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER AND IDENTICAL TO THE REMARK 300 ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 49 54.64 38.95 REMARK 500 PRO A 68 106.60 -46.99 REMARK 500 LYS A 120 -156.39 -163.04 REMARK 500 VAL A 132 -76.35 -115.61 REMARK 500 PRO A 152 105.43 -59.49 REMARK 500 SER A 199 162.27 179.86 REMARK 500 ASP A 206 -179.12 177.18 REMARK 500 ILE B 8 -61.01 -127.31 REMARK 500 MET B 44 51.50 -115.81 REMARK 500 LEU B 49 -123.58 45.25 REMARK 500 SER B 67 55.87 -149.77 REMARK 500 VAL B 132 -71.08 -119.69 REMARK 500 PRO B 152 103.96 -57.92 REMARK 500 PRO B 175 -8.40 -52.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1611 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH A1630 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1633 DISTANCE = 5.25 ANGSTROMS REMARK 525 HOH A1634 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A1635 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A1652 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A1657 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH A1672 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A1679 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1683 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1685 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1687 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1695 DISTANCE = 5.32 ANGSTROMS REMARK 525 HOH A1696 DISTANCE = 8.19 ANGSTROMS REMARK 525 HOH A1698 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH A1700 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A1702 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A1704 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A1706 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A1708 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1709 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A1720 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A1721 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1723 DISTANCE = 8.69 ANGSTROMS REMARK 525 HOH A1724 DISTANCE = 8.91 ANGSTROMS REMARK 525 HOH B1532 DISTANCE = 5.54 ANGSTROMS REMARK 525 HOH B1550 DISTANCE = 9.75 ANGSTROMS REMARK 525 HOH B1562 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH B1584 DISTANCE = 5.80 ANGSTROMS REMARK 525 HOH B1587 DISTANCE = 7.90 ANGSTROMS REMARK 525 HOH B1599 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH B1600 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH B1606 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH B1607 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH B1613 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH B1615 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1616 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B1617 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B1642 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH B1656 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH B1659 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B1674 DISTANCE = 9.75 ANGSTROMS REMARK 525 HOH B1675 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH B1683 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B1687 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH B1688 DISTANCE = 8.55 ANGSTROMS REMARK 525 HOH B1691 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH B1694 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH B1702 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B1703 DISTANCE = 7.56 ANGSTROMS REMARK 525 HOH B1704 DISTANCE = 8.22 ANGSTROMS REMARK 525 HOH B1705 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH B1709 DISTANCE = 5.43 ANGSTROMS REMARK 525 HOH B1710 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH B1711 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B1715 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH B1720 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B1722 DISTANCE = 6.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 POP A1401 O1 REMARK 620 2 ASN A 103 OD1 82.9 REMARK 620 3 ASP A 104 OD1 156.6 88.6 REMARK 620 4 POP A1401 O5 96.2 179.2 92.2 REMARK 620 5 BT5 B1301 OP1 106.0 97.8 96.6 82.6 REMARK 620 6 ASP A 104 OD2 101.6 85.7 56.0 94.3 152.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 104 OD2 REMARK 620 2 POP B1402 O4 115.2 REMARK 620 3 POP B1402 O6 82.5 93.1 REMARK 620 4 ASN B 103 OD1 93.8 99.3 167.5 REMARK 620 5 ASP B 104 OD1 54.3 168.7 89.7 78.5 REMARK 620 6 BT5 B1302 OP1 146.9 96.0 85.1 91.8 95.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BT5 B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BT5 B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 1402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DKG RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH BIOTINYL-5'-AMP, REMARK 900 PYROPHOSPHATE AND MG(2+) REMARK 900 RELATED ID: PHO001000147.10 RELATED DB: TARGETDB DBREF 2DTI A 1 235 UNP O57883 O57883_PYRHO 1 235 DBREF 2DTI B 1 235 UNP O57883 O57883_PYRHO 1 235 SEQRES 1 A 235 MET LEU GLY LEU LYS THR SER ILE ILE GLY ARG ARG VAL SEQRES 2 A 235 ILE TYR PHE GLN GLU ILE THR SER THR ASN GLU PHE ALA SEQRES 3 A 235 LYS THR SER TYR LEU GLU GLU GLY THR VAL ILE VAL ALA SEQRES 4 A 235 ASP LYS GLN THR MET GLY HIS GLY ARG LEU ASN ARG LYS SEQRES 5 A 235 TRP GLU SER PRO GLU GLY GLY LEU TRP LEU SER ILE VAL SEQRES 6 A 235 LEU SER PRO LYS VAL PRO GLN LYS ASP LEU PRO LYS ILE SEQRES 7 A 235 VAL PHE LEU GLY ALA VAL GLY VAL VAL GLU THR LEU LYS SEQRES 8 A 235 GLU PHE SER ILE ASP GLY ARG ILE LYS TRP PRO ASN ASP SEQRES 9 A 235 VAL LEU VAL ASN TYR LYS LYS ILE ALA GLY VAL LEU VAL SEQRES 10 A 235 GLU GLY LYS GLY ASP LYS ILE VAL LEU GLY ILE GLY LEU SEQRES 11 A 235 ASN VAL ASN ASN LYS VAL PRO ASN GLY ALA THR SER MET SEQRES 12 A 235 LYS LEU GLU LEU GLY SER GLU VAL PRO LEU LEU SER VAL SEQRES 13 A 235 PHE ARG SER LEU ILE THR ASN LEU ASP ARG LEU TYR LEU SEQRES 14 A 235 ASN PHE LEU LYS ASN PRO MET ASP ILE LEU ASN LEU VAL SEQRES 15 A 235 ARG ASP ASN MET ILE LEU GLY VAL ARG VAL LYS ILE LEU SEQRES 16 A 235 GLY ASP GLY SER PHE GLU GLY ILE ALA GLU ASP ILE ASP SEQRES 17 A 235 ASP PHE GLY ARG LEU ILE ILE ARG LEU ASP SER GLY GLU SEQRES 18 A 235 VAL LYS LYS VAL ILE TYR GLY ASP VAL SER LEU ARG PHE SEQRES 19 A 235 LEU SEQRES 1 B 235 MET LEU GLY LEU LYS THR SER ILE ILE GLY ARG ARG VAL SEQRES 2 B 235 ILE TYR PHE GLN GLU ILE THR SER THR ASN GLU PHE ALA SEQRES 3 B 235 LYS THR SER TYR LEU GLU GLU GLY THR VAL ILE VAL ALA SEQRES 4 B 235 ASP LYS GLN THR MET GLY HIS GLY ARG LEU ASN ARG LYS SEQRES 5 B 235 TRP GLU SER PRO GLU GLY GLY LEU TRP LEU SER ILE VAL SEQRES 6 B 235 LEU SER PRO LYS VAL PRO GLN LYS ASP LEU PRO LYS ILE SEQRES 7 B 235 VAL PHE LEU GLY ALA VAL GLY VAL VAL GLU THR LEU LYS SEQRES 8 B 235 GLU PHE SER ILE ASP GLY ARG ILE LYS TRP PRO ASN ASP SEQRES 9 B 235 VAL LEU VAL ASN TYR LYS LYS ILE ALA GLY VAL LEU VAL SEQRES 10 B 235 GLU GLY LYS GLY ASP LYS ILE VAL LEU GLY ILE GLY LEU SEQRES 11 B 235 ASN VAL ASN ASN LYS VAL PRO ASN GLY ALA THR SER MET SEQRES 12 B 235 LYS LEU GLU LEU GLY SER GLU VAL PRO LEU LEU SER VAL SEQRES 13 B 235 PHE ARG SER LEU ILE THR ASN LEU ASP ARG LEU TYR LEU SEQRES 14 B 235 ASN PHE LEU LYS ASN PRO MET ASP ILE LEU ASN LEU VAL SEQRES 15 B 235 ARG ASP ASN MET ILE LEU GLY VAL ARG VAL LYS ILE LEU SEQRES 16 B 235 GLY ASP GLY SER PHE GLU GLY ILE ALA GLU ASP ILE ASP SEQRES 17 B 235 ASP PHE GLY ARG LEU ILE ILE ARG LEU ASP SER GLY GLU SEQRES 18 B 235 VAL LYS LYS VAL ILE TYR GLY ASP VAL SER LEU ARG PHE SEQRES 19 B 235 LEU HET MN A1501 1 HET MN B1502 1 HET BT5 B1301 38 HET BT5 B1302 38 HET POP A1401 9 HET POP B1402 18 HETNAM MN MANGANESE (II) ION HETNAM BT5 BIOTINYL-5-AMP HETNAM POP PYROPHOSPHATE 2- FORMUL 3 MN 2(MN 2+) FORMUL 5 BT5 2(C20 H28 N7 O9 P S) FORMUL 6 POP 2(H2 O7 P2 2-) FORMUL 8 HOH *460(H2 O) HELIX 1 1 SER A 21 SER A 29 1 9 HELIX 2 2 ASP A 74 PRO A 76 5 3 HELIX 3 3 LYS A 77 PHE A 93 1 17 HELIX 4 4 SER A 142 GLY A 148 1 7 HELIX 5 5 PRO A 152 ASN A 174 1 23 HELIX 6 6 MET A 176 ASN A 185 1 10 HELIX 7 7 SER B 21 SER B 29 1 9 HELIX 8 8 PRO B 71 PRO B 76 5 6 HELIX 9 9 LYS B 77 PHE B 93 1 17 HELIX 10 10 SER B 142 GLY B 148 1 7 HELIX 11 11 PRO B 152 ASN B 174 1 23 HELIX 12 12 MET B 176 MET B 186 1 11 SHEET 1 A14 ARG A 98 LYS A 100 0 SHEET 2 A14 ASP A 104 VAL A 107 -1 O ASP A 104 N LYS A 100 SHEET 3 A14 LYS A 110 GLU A 118 -1 O LYS A 110 N VAL A 107 SHEET 4 A14 ILE A 124 LEU A 130 -1 O GLY A 129 N GLY A 114 SHEET 5 A14 LEU A 60 LEU A 66 -1 N LEU A 66 O ILE A 124 SHEET 6 A14 THR A 35 GLN A 42 -1 N ILE A 37 O SER A 63 SHEET 7 A14 ARG A 12 ILE A 19 1 N ILE A 14 O VAL A 36 SHEET 8 A14 ARG B 12 PHE B 16 -1 O TYR B 15 N VAL A 13 SHEET 9 A14 THR B 35 ALA B 39 1 O VAL B 36 N ILE B 14 SHEET 10 A14 LEU B 60 LEU B 66 -1 O SER B 63 N ILE B 37 SHEET 11 A14 LYS B 123 LEU B 130 -1 O ILE B 124 N LEU B 66 SHEET 12 A14 LYS B 110 LYS B 120 -1 N LEU B 116 O GLY B 127 SHEET 13 A14 ASP B 104 VAL B 107 -1 N VAL B 107 O LYS B 110 SHEET 14 A14 ARG B 98 LYS B 100 -1 N ARG B 98 O LEU B 106 SHEET 1 B 5 VAL A 222 VAL A 225 0 SHEET 2 B 5 LEU A 213 ARG A 216 -1 N LEU A 213 O VAL A 225 SHEET 3 B 5 SER A 199 ILE A 207 -1 N ASP A 206 O ILE A 214 SHEET 4 B 5 ARG A 191 LEU A 195 -1 N VAL A 192 O GLY A 202 SHEET 5 B 5 SER A 231 PHE A 234 -1 O SER A 231 N LEU A 195 SHEET 1 C 5 VAL B 222 VAL B 225 0 SHEET 2 C 5 LEU B 213 ARG B 216 -1 N LEU B 213 O VAL B 225 SHEET 3 C 5 PHE B 200 ILE B 207 -1 N ASP B 206 O ILE B 214 SHEET 4 C 5 VAL B 190 LEU B 195 -1 N ILE B 194 O PHE B 200 SHEET 5 C 5 SER B 231 PHE B 234 -1 O ARG B 233 N LYS B 193 LINK MN MN A1501 O1 POP A1401 1555 1555 2.06 LINK MN MN A1501 OD1 ASN A 103 1555 1555 2.58 LINK MN MN A1501 OD1 ASP A 104 1555 1555 2.38 LINK MN MN A1501 O5 POP A1401 1555 1555 2.22 LINK MN MN A1501 OP1 BT5 B1301 1555 1555 2.02 LINK MN MN A1501 OD2 ASP A 104 1555 1555 2.27 LINK MN MN B1502 OD2 ASP B 104 1555 1555 2.22 LINK MN MN B1502 O4 APOP B1402 1555 1555 2.71 LINK MN MN B1502 O6 BPOP B1402 1555 1555 2.15 LINK MN MN B1502 OD1 ASN B 103 1555 1555 2.68 LINK MN MN B1502 OD1 ASP B 104 1555 1555 2.52 LINK MN MN B1502 OP1 BT5 B1302 1555 1555 2.30 CISPEP 1 TRP A 101 PRO A 102 0 0.40 CISPEP 2 TRP B 101 PRO B 102 0 0.14 SITE 1 AC1 5 ASN A 103 ASP A 104 LYS A 111 POP A1401 SITE 2 AC1 5 BT5 B1301 SITE 1 AC2 4 ASN B 103 ASP B 104 BT5 B1302 POP B1402 SITE 1 AC3 25 SER A 21 THR A 22 ASN A 23 GLN A 42 SITE 2 AC3 25 GLY A 45 HIS A 46 GLY A 47 ARG A 48 SITE 3 AC3 25 ARG A 51 LYS A 52 TRP A 53 GLU A 54 SITE 4 AC3 25 LEU A 62 SER A 63 ASN A 103 ASP A 104 SITE 5 AC3 25 GLY A 114 VAL A 115 ILE A 128 ASN A 131 SITE 6 AC3 25 VAL A 136 PRO A 137 ALA A 140 POP A1401 SITE 7 AC3 25 MN A1501 SITE 1 AC4 22 SER B 21 THR B 22 ASN B 23 GLN B 42 SITE 2 AC4 22 HIS B 46 GLY B 47 ARG B 48 ARG B 51 SITE 3 AC4 22 LYS B 52 TRP B 53 GLU B 54 LEU B 62 SITE 4 AC4 22 ASN B 103 ASP B 104 LYS B 111 GLY B 114 SITE 5 AC4 22 ILE B 128 GLY B 129 ASN B 131 ALA B 140 SITE 6 AC4 22 POP B1402 MN B1502 SITE 1 AC5 13 ARG A 48 ARG A 51 LYS A 100 PRO A 102 SITE 2 AC5 13 ASN A 103 ASP A 104 LYS A 111 SER A 231 SITE 3 AC5 13 LEU A 232 MN A1501 HOH A1651 HOH A1733 SITE 4 AC5 13 BT5 B1301 SITE 1 AC6 12 ARG B 48 LYS B 100 ASP B 104 LYS B 111 SITE 2 AC6 12 SER B 231 LEU B 232 BT5 B1302 MN B1502 SITE 3 AC6 12 HOH B1566 HOH B1671 HOH B1673 HOH B1716 CRYST1 38.351 82.628 72.718 90.00 102.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026075 0.000000 0.005647 0.00000 SCALE2 0.000000 0.012102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014071 0.00000 MASTER 365 0 6 12 24 0 23 6 0 0 0 38 END