HEADER LIGASE 12-JUL-06 2DTH TITLE THE CRYSTAL STRUCTURE OF THE ORTHORHOMBIC FORM OF BIOTIN PROTEIN TITLE 2 LIGASE FROM PYROCOCCUS HORIKOSHII OT3 IN COMPLEX WITH BIOTIN AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 235AA LONG HYPOTHETICAL BIOTIN--[ACETYL-COA-CARBOXYLASE] COMPND 3 LIGASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: BIOTIN PROTEIN LIGASE; COMPND 6 EC: 6.3.4.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: BIRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: (DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11A KEYWDS BIOTIN BIOSYNTHESIS, DIMER, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.BAGAUTDINOV,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2DTH 1 VERSN REVDAT 2 24-FEB-09 2DTH 1 VERSN REVDAT 1 12-JAN-07 2DTH 0 JRNL AUTH B.BAGAUTDINOV,N.KUNISHIMA JRNL TITL LIGAND STRUCTURES OF BIOTIN PROTEIN LIGASE FROM PYROCOCCUS JRNL TITL 2 HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 38943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1940 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 193 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.61000 REMARK 3 B22 (A**2) : 7.14000 REMARK 3 B33 (A**2) : -2.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.81 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-06. REMARK 100 THE RCSB ID CODE IS RCSB025823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38943 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48600 REMARK 200 R SYM FOR SHELL (I) : 0.39500 REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2FYK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG20K, ACETATE, NAOH, 2.5MM ADP, REMARK 280 2.5MM BIOTIN, 1MM MNCL2, PH 5.2, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.00050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.10500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.35900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.10500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.00050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.35900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER IDENTICAL TO THE ASYMMETRIC REMARK 300 UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 8 -66.16 -123.95 REMARK 500 LYS A 27 -69.12 -92.94 REMARK 500 THR A 28 7.23 -55.72 REMARK 500 LYS A 120 34.07 -153.67 REMARK 500 VAL A 132 -78.05 -114.96 REMARK 500 ASP A 206 -172.39 179.35 REMARK 500 ASP A 209 6.88 -68.75 REMARK 500 ILE B 8 -63.82 -120.78 REMARK 500 VAL B 132 -76.15 -112.22 REMARK 500 ASP B 206 179.16 176.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1519 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH A1520 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH A1533 DISTANCE = 5.54 ANGSTROMS REMARK 525 HOH A1535 DISTANCE = 5.43 ANGSTROMS REMARK 525 HOH A1541 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH A1583 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH A1589 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1594 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH A1599 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A1621 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A1629 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A1633 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A1637 DISTANCE = 8.78 ANGSTROMS REMARK 525 HOH A1638 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A1639 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1641 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A1642 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A1643 DISTANCE = 5.62 ANGSTROMS REMARK 525 HOH A1644 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A1656 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH A1657 DISTANCE = 5.32 ANGSTROMS REMARK 525 HOH A1660 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1662 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A1664 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A1665 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH A1666 DISTANCE = 9.28 ANGSTROMS REMARK 525 HOH A1667 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH A1668 DISTANCE = 5.78 ANGSTROMS REMARK 525 HOH A1670 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH A1671 DISTANCE = 9.67 ANGSTROMS REMARK 525 HOH A1672 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A1675 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH A1687 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A1692 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A1695 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A1702 DISTANCE = 10.66 ANGSTROMS REMARK 525 HOH A1704 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A1705 DISTANCE = 9.77 ANGSTROMS REMARK 525 HOH A1706 DISTANCE = 11.90 ANGSTROMS REMARK 525 HOH A1710 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B1512 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH B1516 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH B1524 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH B1528 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH B1535 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH B1540 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH B1551 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B1564 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH B1569 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH B1575 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH B1576 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B1579 DISTANCE = 13.55 ANGSTROMS REMARK 525 HOH B1582 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH B1585 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH B1587 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH B1597 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B1604 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B1616 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH B1617 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH B1618 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B1622 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B1641 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH B1646 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH B1647 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH B1648 DISTANCE = 8.63 ANGSTROMS REMARK 525 HOH B1650 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B1652 DISTANCE = 8.19 ANGSTROMS REMARK 525 HOH B1653 DISTANCE = 11.11 ANGSTROMS REMARK 525 HOH B1654 DISTANCE = 11.25 ANGSTROMS REMARK 525 HOH B1656 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH B1657 DISTANCE = 12.28 ANGSTROMS REMARK 525 HOH B1658 DISTANCE = 14.25 ANGSTROMS REMARK 525 HOH B1659 DISTANCE = 13.94 ANGSTROMS REMARK 525 HOH B1661 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH B1664 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B1666 DISTANCE = 12.69 ANGSTROMS REMARK 525 HOH B1667 DISTANCE = 10.86 ANGSTROMS REMARK 525 HOH B1675 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH B1678 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH B1681 DISTANCE = 9.72 ANGSTROMS REMARK 525 HOH B1685 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH B1686 DISTANCE = 8.65 ANGSTROMS REMARK 525 HOH B1687 DISTANCE = 14.43 ANGSTROMS REMARK 525 HOH B1688 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH B1690 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B1691 DISTANCE = 8.47 ANGSTROMS REMARK 525 HOH B1694 DISTANCE = 11.11 ANGSTROMS REMARK 525 HOH B1695 DISTANCE = 13.17 ANGSTROMS REMARK 525 HOH B1696 DISTANCE = 7.26 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ADP A 1301 REMARK 610 ADP B 1302 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN B 1402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WNL RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE MONOCLINIC FORM REMARK 900 RELATED ID: 1WPY RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE MONOCLINIC FORM REMARK 900 RELATED ID: 1WQ7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE MONOCLINIC FORM REMARK 900 RELATED ID: 1WQW RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE MONOCLINIC FORM REMARK 900 RELATED ID: 1X01 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE MONOCLINIC FORM REMARK 900 RELATED ID: 2FYK RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE MONOCLINIC FORM REMARK 900 RELATED ID: PHO001000147.11 RELATED DB: TARGETDB DBREF 2DTH A 1 235 UNP O57883 O57883_PYRHO 1 235 DBREF 2DTH B 1 235 UNP O57883 O57883_PYRHO 1 235 SEQRES 1 A 235 MET LEU GLY LEU LYS THR SER ILE ILE GLY ARG ARG VAL SEQRES 2 A 235 ILE TYR PHE GLN GLU ILE THR SER THR ASN GLU PHE ALA SEQRES 3 A 235 LYS THR SER TYR LEU GLU GLU GLY THR VAL ILE VAL ALA SEQRES 4 A 235 ASP LYS GLN THR MET GLY HIS GLY ARG LEU ASN ARG LYS SEQRES 5 A 235 TRP GLU SER PRO GLU GLY GLY LEU TRP LEU SER ILE VAL SEQRES 6 A 235 LEU SER PRO LYS VAL PRO GLN LYS ASP LEU PRO LYS ILE SEQRES 7 A 235 VAL PHE LEU GLY ALA VAL GLY VAL VAL GLU THR LEU LYS SEQRES 8 A 235 GLU PHE SER ILE ASP GLY ARG ILE LYS TRP PRO ASN ASP SEQRES 9 A 235 VAL LEU VAL ASN TYR LYS LYS ILE ALA GLY VAL LEU VAL SEQRES 10 A 235 GLU GLY LYS GLY ASP LYS ILE VAL LEU GLY ILE GLY LEU SEQRES 11 A 235 ASN VAL ASN ASN LYS VAL PRO ASN GLY ALA THR SER MET SEQRES 12 A 235 LYS LEU GLU LEU GLY SER GLU VAL PRO LEU LEU SER VAL SEQRES 13 A 235 PHE ARG SER LEU ILE THR ASN LEU ASP ARG LEU TYR LEU SEQRES 14 A 235 ASN PHE LEU LYS ASN PRO MET ASP ILE LEU ASN LEU VAL SEQRES 15 A 235 ARG ASP ASN MET ILE LEU GLY VAL ARG VAL LYS ILE LEU SEQRES 16 A 235 GLY ASP GLY SER PHE GLU GLY ILE ALA GLU ASP ILE ASP SEQRES 17 A 235 ASP PHE GLY ARG LEU ILE ILE ARG LEU ASP SER GLY GLU SEQRES 18 A 235 VAL LYS LYS VAL ILE TYR GLY ASP VAL SER LEU ARG PHE SEQRES 19 A 235 LEU SEQRES 1 B 235 MET LEU GLY LEU LYS THR SER ILE ILE GLY ARG ARG VAL SEQRES 2 B 235 ILE TYR PHE GLN GLU ILE THR SER THR ASN GLU PHE ALA SEQRES 3 B 235 LYS THR SER TYR LEU GLU GLU GLY THR VAL ILE VAL ALA SEQRES 4 B 235 ASP LYS GLN THR MET GLY HIS GLY ARG LEU ASN ARG LYS SEQRES 5 B 235 TRP GLU SER PRO GLU GLY GLY LEU TRP LEU SER ILE VAL SEQRES 6 B 235 LEU SER PRO LYS VAL PRO GLN LYS ASP LEU PRO LYS ILE SEQRES 7 B 235 VAL PHE LEU GLY ALA VAL GLY VAL VAL GLU THR LEU LYS SEQRES 8 B 235 GLU PHE SER ILE ASP GLY ARG ILE LYS TRP PRO ASN ASP SEQRES 9 B 235 VAL LEU VAL ASN TYR LYS LYS ILE ALA GLY VAL LEU VAL SEQRES 10 B 235 GLU GLY LYS GLY ASP LYS ILE VAL LEU GLY ILE GLY LEU SEQRES 11 B 235 ASN VAL ASN ASN LYS VAL PRO ASN GLY ALA THR SER MET SEQRES 12 B 235 LYS LEU GLU LEU GLY SER GLU VAL PRO LEU LEU SER VAL SEQRES 13 B 235 PHE ARG SER LEU ILE THR ASN LEU ASP ARG LEU TYR LEU SEQRES 14 B 235 ASN PHE LEU LYS ASN PRO MET ASP ILE LEU ASN LEU VAL SEQRES 15 B 235 ARG ASP ASN MET ILE LEU GLY VAL ARG VAL LYS ILE LEU SEQRES 16 B 235 GLY ASP GLY SER PHE GLU GLY ILE ALA GLU ASP ILE ASP SEQRES 17 B 235 ASP PHE GLY ARG LEU ILE ILE ARG LEU ASP SER GLY GLU SEQRES 18 B 235 VAL LYS LYS VAL ILE TYR GLY ASP VAL SER LEU ARG PHE SEQRES 19 B 235 LEU HET ADP A1301 17 HET ADP B1302 17 HET BTN A1401 16 HET BTN B1402 16 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM BTN BIOTIN FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 BTN 2(C10 H16 N2 O3 S) FORMUL 7 HOH *611(H2 O) HELIX 1 1 SER A 21 THR A 28 1 8 HELIX 2 2 PRO A 71 PRO A 76 5 6 HELIX 3 3 LYS A 77 PHE A 93 1 17 HELIX 4 4 SER A 142 GLY A 148 1 7 HELIX 5 5 PRO A 152 ASN A 174 1 23 HELIX 6 6 MET A 176 MET A 186 1 11 HELIX 7 7 SER B 21 SER B 29 1 9 HELIX 8 8 GLY B 47 ARG B 51 5 5 HELIX 9 9 ASP B 74 PRO B 76 5 3 HELIX 10 10 LYS B 77 PHE B 93 1 17 HELIX 11 11 SER B 142 GLY B 148 1 7 HELIX 12 12 PRO B 152 ASN B 174 1 23 HELIX 13 13 ASP B 177 ASP B 184 1 8 SHEET 1 A14 ARG A 98 LYS A 100 0 SHEET 2 A14 ASP A 104 VAL A 107 -1 O LEU A 106 N ARG A 98 SHEET 3 A14 LYS A 110 GLY A 119 -1 O ILE A 112 N VAL A 105 SHEET 4 A14 ILE A 124 LEU A 130 -1 O VAL A 125 N GLU A 118 SHEET 5 A14 LEU A 60 LEU A 66 -1 N LEU A 66 O ILE A 124 SHEET 6 A14 VAL A 36 GLN A 42 -1 N ILE A 37 O SER A 63 SHEET 7 A14 ARG A 12 ILE A 19 1 N ILE A 14 O VAL A 36 SHEET 8 A14 ARG B 12 ILE B 19 -1 O TYR B 15 N VAL A 13 SHEET 9 A14 VAL B 36 GLN B 42 1 O VAL B 36 N ILE B 14 SHEET 10 A14 LEU B 60 LEU B 66 -1 O SER B 63 N ILE B 37 SHEET 11 A14 LYS B 123 LEU B 130 -1 O ILE B 124 N LEU B 66 SHEET 12 A14 LYS B 110 LYS B 120 -1 N LEU B 116 O GLY B 127 SHEET 13 A14 ASP B 104 VAL B 107 -1 N VAL B 107 O LYS B 110 SHEET 14 A14 ARG B 98 LYS B 100 -1 N ARG B 98 O LEU B 106 SHEET 1 B 5 VAL A 222 VAL A 225 0 SHEET 2 B 5 LEU A 213 ARG A 216 -1 N ILE A 215 O LYS A 223 SHEET 3 B 5 SER A 199 ILE A 207 -1 N ASP A 206 O ILE A 214 SHEET 4 B 5 ARG A 191 LEU A 195 -1 N VAL A 192 O GLY A 202 SHEET 5 B 5 SER A 231 PHE A 234 -1 O ARG A 233 N LYS A 193 SHEET 1 C 5 VAL B 222 VAL B 225 0 SHEET 2 C 5 LEU B 213 ARG B 216 -1 N LEU B 213 O VAL B 225 SHEET 3 C 5 SER B 199 ILE B 207 -1 N ASP B 206 O ILE B 214 SHEET 4 C 5 ARG B 191 LEU B 195 -1 N VAL B 192 O GLY B 202 SHEET 5 C 5 SER B 231 PHE B 234 -1 O ARG B 233 N LYS B 193 CISPEP 1 TRP A 101 PRO A 102 0 0.05 CISPEP 2 TRP B 101 PRO B 102 0 0.16 SITE 1 AC1 10 ARG A 51 LYS A 52 TRP A 53 GLU A 54 SITE 2 AC1 10 LYS A 111 ASN A 131 ALA A 140 HOH A1451 SITE 3 AC1 10 HOH A1616 PRO B 71 SITE 1 AC2 7 ARG B 51 LYS B 52 TRP B 53 GLU B 54 SITE 2 AC2 7 ASN B 131 ALA B 140 HOH B1700 SITE 1 AC3 17 SER A 21 THR A 22 ASN A 23 GLN A 42 SITE 2 AC3 17 GLY A 45 HIS A 46 GLY A 47 ARG A 48 SITE 3 AC3 17 TRP A 53 LEU A 62 ASN A 103 ASP A 104 SITE 4 AC3 17 LYS A 111 GLY A 114 VAL A 115 ILE A 128 SITE 5 AC3 17 GLY A 129 SITE 1 AC4 16 SER B 21 THR B 22 ASN B 23 GLN B 42 SITE 2 AC4 16 GLY B 45 HIS B 46 GLY B 47 ARG B 48 SITE 3 AC4 16 LEU B 62 ASN B 103 ASP B 104 LYS B 111 SITE 4 AC4 16 GLY B 114 VAL B 115 ILE B 128 GLY B 129 CRYST1 70.001 72.718 104.210 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009596 0.00000 MASTER 383 0 4 13 24 0 14 6 0 0 0 38 END