HEADER TRANSFERASE/DNA 12-MAY-06 2DPJ TITLE STRUCTURE OF HPOLI WITH DNA AND DTTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3'; COMPND 3 CHAIN: P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*TP*(EDA)P*GP*GP*GP*TP*CP*CP*T)-3'; COMPND 7 CHAIN: T; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE IOTA; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: RESIDUES 1-420; COMPND 13 SYNONYM: RAD30 HOMOLOG B, ETA2; COMPND 14 EC: 2.7.7.7; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: POLI, RAD30B; SOURCE 10 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 11 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BJ5464; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PBJ941 KEYWDS DNA DEPENDENT DNA POLYMERASE, ETHENODA ADDUCT, LESION BYPASS, DTTP, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.T.NAIR,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL REVDAT 4 13-JUL-11 2DPJ 1 VERSN REVDAT 3 24-FEB-09 2DPJ 1 VERSN REVDAT 2 18-JUL-06 2DPJ 1 JRNL REVDAT 1 04-JUL-06 2DPJ 0 JRNL AUTH D.T.NAIR,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL JRNL TITL HOOGSTEEN BASE PAIR FORMATION PROMOTES SYNTHESIS OPPOSITE JRNL TITL 2 THE 1,N(6)-ETHENODEOXYADENOSINE LESION BY HUMAN DNA JRNL TITL 3 POLYMERASE IOTA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 619 2006 JRNL REFN ISSN 1545-9993 JRNL PMID 16819516 JRNL DOI 10.1038/NSMB1118 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 22903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1964 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1527 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2876 REMARK 3 NUCLEIC ACID ATOMS : 323 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.342 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3306 ; 0.037 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4531 ; 2.865 ; 2.113 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 7.612 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 517 ; 0.197 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2317 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1339 ; 0.300 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 170 ; 0.218 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.365 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.310 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1860 ; 1.796 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2997 ; 3.143 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1446 ; 4.307 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1534 ; 6.179 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 37 REMARK 3 RESIDUE RANGE : A 99 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1742 16.6531 6.0704 REMARK 3 T TENSOR REMARK 3 T11: 0.3552 T22: 0.3587 REMARK 3 T33: 0.2650 T12: 0.0205 REMARK 3 T13: -0.0293 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.1125 L22: 0.7021 REMARK 3 L33: 1.6540 L12: 0.1630 REMARK 3 L13: 0.0852 L23: 0.4779 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: 0.0174 S13: -0.0296 REMARK 3 S21: -0.0149 S22: -0.0904 S23: 0.0305 REMARK 3 S31: 0.0951 S32: 0.1960 S33: 0.0389 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0835 16.2253 23.7223 REMARK 3 T TENSOR REMARK 3 T11: 0.3333 T22: 0.3270 REMARK 3 T33: 0.3458 T12: -0.1790 REMARK 3 T13: 0.0679 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 1.6038 L22: 3.0709 REMARK 3 L33: 4.2375 L12: -0.1424 REMARK 3 L13: -0.7810 L23: 0.7510 REMARK 3 S TENSOR REMARK 3 S11: 0.1035 S12: -0.0819 S13: -0.1373 REMARK 3 S21: 0.1821 S22: -0.1590 S23: 0.4805 REMARK 3 S31: 0.4428 S32: -0.3791 S33: 0.0555 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2036 35.5023 -3.3046 REMARK 3 T TENSOR REMARK 3 T11: 0.3269 T22: 0.2564 REMARK 3 T33: 0.4778 T12: 0.0060 REMARK 3 T13: -0.2184 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 3.6034 L22: 2.1649 REMARK 3 L33: 3.4880 L12: -0.6315 REMARK 3 L13: 2.8764 L23: 0.7745 REMARK 3 S TENSOR REMARK 3 S11: -0.5834 S12: -0.0730 S13: 0.8525 REMARK 3 S21: -0.1225 S22: -0.1885 S23: -0.1288 REMARK 3 S31: -0.2702 S32: -0.1665 S33: 0.7719 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0497 41.3332 32.9066 REMARK 3 T TENSOR REMARK 3 T11: 0.4633 T22: 0.1735 REMARK 3 T33: 0.3578 T12: -0.2712 REMARK 3 T13: 0.2629 T23: -0.2093 REMARK 3 L TENSOR REMARK 3 L11: 2.9095 L22: 6.8502 REMARK 3 L33: 3.9023 L12: 1.9998 REMARK 3 L13: -1.1995 L23: 0.0894 REMARK 3 S TENSOR REMARK 3 S11: 0.9063 S12: -0.2384 S13: 0.4146 REMARK 3 S21: 1.1320 S22: -0.6700 S23: 0.8768 REMARK 3 S31: -0.2941 S32: 0.2720 S33: -0.2363 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 839 T 847 REMARK 3 RESIDUE RANGE : P 867 P 873 REMARK 3 RESIDUE RANGE : A 875 A 875 REMARK 3 RESIDUE RANGE : A 871 A 872 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3321 36.8890 17.2732 REMARK 3 T TENSOR REMARK 3 T11: 0.3420 T22: 0.2985 REMARK 3 T33: 0.4967 T12: -0.1273 REMARK 3 T13: -0.0394 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 1.3952 L22: 1.6560 REMARK 3 L33: 0.5579 L12: -0.0858 REMARK 3 L13: -1.1398 L23: -0.4785 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: -0.0815 S13: 0.5780 REMARK 3 S21: -0.0049 S22: -0.0886 S23: 0.5145 REMARK 3 S31: 0.0134 S32: 0.1891 S33: 0.0279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS REFINED ALSO WITH REMARK 3 CNS1.1 REMARK 4 REMARK 4 2DPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26535 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2ALZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 5K MME, 0.4M AMMONIUM SULFATE, REMARK 280 0.1M MES BUFFER, PH 6.5, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.40133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.70067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.55100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.85033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 169.25167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 135.40133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.70067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.85033 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.55100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 169.25167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, T, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 49.02950 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 84.92159 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.85033 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLN A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 HIS A 16 REMARK 465 ASP A 17 REMARK 465 GLN A 18 REMARK 465 VAL A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 ASN A 24 REMARK 465 LYS A 371 REMARK 465 LEU A 372 REMARK 465 GLY A 373 REMARK 465 THR A 374 REMARK 465 GLY A 375 REMARK 465 ASN A 376 REMARK 465 TYR A 377 REMARK 465 ASP A 378 REMARK 465 VAL A 395 REMARK 465 ASN A 396 REMARK 465 VAL A 397 REMARK 465 LYS A 398 REMARK 465 MET A 399 REMARK 465 PRO A 400 REMARK 465 PHE A 401 REMARK 465 HIS A 402 REMARK 465 LEU A 403 REMARK 465 ALA A 415 REMARK 465 LEU A 416 REMARK 465 ASN A 417 REMARK 465 THR A 418 REMARK 465 ALA A 419 REMARK 465 LYS A 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 VAL A 315 CG1 CG2 REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 TYR A 349 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 350 OG REMARK 470 SER A 351 OG REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 HIS A 354 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 355 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 367 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 379 CG1 CG2 REMARK 470 ILE A 386 CG1 CG2 CD1 REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 LEU A 405 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DA P 867 O3' DT T 847 10665 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG P 868 C5 DG P 868 N7 0.054 REMARK 500 DG P 869 C5 DG P 869 N7 0.063 REMARK 500 DC P 871 C2' DC P 871 C1' 0.072 REMARK 500 DC P 871 O4' DC P 871 C1' -0.072 REMARK 500 DC P 872 P DC P 872 OP2 -0.115 REMARK 500 DC P 872 O3' DC P 872 C3' -0.080 REMARK 500 DT T 839 C5' DT T 839 C4' 0.077 REMARK 500 DT T 839 O4' DT T 839 C4' 0.061 REMARK 500 DT T 839 C1' DT T 839 N1 0.100 REMARK 500 DT T 839 C5 DT T 839 C6 0.049 REMARK 500 DT T 839 C6 DT T 839 N1 0.050 REMARK 500 DT T 839 C5 DT T 839 C7 0.038 REMARK 500 DG T 841 P DG T 841 O5' 0.116 REMARK 500 DG T 841 O3' DG T 841 C3' -0.048 REMARK 500 DG T 841 C2 DG T 841 N3 0.055 REMARK 500 DG T 841 C6 DG T 841 N1 0.064 REMARK 500 DG T 842 O3' DG T 842 C3' -0.047 REMARK 500 DG T 843 P DG T 843 OP2 -0.102 REMARK 500 DG T 843 P DG T 843 O5' 0.123 REMARK 500 DG T 843 C5' DG T 843 C4' -0.071 REMARK 500 DG T 843 C3' DG T 843 C2' -0.059 REMARK 500 DG T 843 O4' DG T 843 C1' -0.108 REMARK 500 DG T 843 C6 DG T 843 N1 0.059 REMARK 500 DT T 844 O3' DT T 844 C3' -0.092 REMARK 500 DT T 844 N1 DT T 844 C2 -0.050 REMARK 500 DT T 844 C2 DT T 844 O2 -0.053 REMARK 500 DC T 845 C4' DC T 845 C3' 0.061 REMARK 500 DC T 845 N1 DC T 845 C6 -0.043 REMARK 500 DT T 847 C1' DT T 847 N1 0.091 REMARK 500 ALA A 25 CA ALA A 25 CB 0.140 REMARK 500 VAL A 29 CB VAL A 29 CG1 0.127 REMARK 500 VAL A 64 CB VAL A 64 CG2 -0.138 REMARK 500 TYR A 68 CE2 TYR A 68 CD2 -0.108 REMARK 500 ARG A 103 CZ ARG A 103 NH2 0.110 REMARK 500 GLU A 104 CD GLU A 104 OE2 0.087 REMARK 500 ARG A 122 CG ARG A 122 CD 0.204 REMARK 500 ARG A 122 CD ARG A 122 NE -0.105 REMARK 500 GLU A 134 CD GLU A 134 OE1 0.081 REMARK 500 LYS A 207 CE LYS A 207 NZ -0.255 REMARK 500 LYS A 214 CE LYS A 214 NZ -0.160 REMARK 500 LYS A 214 CA LYS A 214 C -0.177 REMARK 500 ASN A 216 N ASN A 216 CA 0.141 REMARK 500 CYS A 249 CB CYS A 249 SG 0.105 REMARK 500 SER A 313 CB SER A 313 OG 0.394 REMARK 500 LYS A 318 CE LYS A 318 NZ 0.357 REMARK 500 ASN A 319 C ASN A 319 O 0.183 REMARK 500 ASP A 385 CG ASP A 385 OD1 0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA P 867 O5' - C5' - C4' ANGL. DEV. = 29.5 DEGREES REMARK 500 DA P 867 O4' - C4' - C3' ANGL. DEV. = -5.7 DEGREES REMARK 500 DA P 867 C1' - O4' - C4' ANGL. DEV. = 7.4 DEGREES REMARK 500 DA P 867 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG P 868 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG P 869 O4' - C1' - N9 ANGL. DEV. = 7.9 DEGREES REMARK 500 DA P 870 O5' - P - OP2 ANGL. DEV. = -10.4 DEGREES REMARK 500 DA P 870 O4' - C4' - C3' ANGL. DEV. = 8.7 DEGREES REMARK 500 DA P 870 O4' - C1' - C2' ANGL. DEV. = 4.0 DEGREES REMARK 500 DA P 870 O4' - C1' - N9 ANGL. DEV. = 10.3 DEGREES REMARK 500 DA P 870 C6 - N1 - C2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA P 870 N1 - C2 - N3 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG P 869 C3' - O3' - P ANGL. DEV. = -8.6 DEGREES REMARK 500 DC P 871 OP1 - P - OP2 ANGL. DEV. = -12.7 DEGREES REMARK 500 DC P 871 O4' - C4' - C3' ANGL. DEV. = 5.7 DEGREES REMARK 500 DC P 872 O4' - C4' - C3' ANGL. DEV. = 6.3 DEGREES REMARK 500 DC P 872 O4' - C1' - N1 ANGL. DEV. = -5.0 DEGREES REMARK 500 DC P 872 C5 - C6 - N1 ANGL. DEV. = -3.2 DEGREES REMARK 500 DT T 839 O4' - C4' - C3' ANGL. DEV. = -3.9 DEGREES REMARK 500 DT T 839 C5' - C4' - O4' ANGL. DEV. = 13.9 DEGREES REMARK 500 DT T 839 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 DT T 839 C6 - N1 - C2 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG T 841 C5 - C6 - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG T 841 C5 - C6 - O6 ANGL. DEV. = -4.1 DEGREES REMARK 500 DG T 842 C1' - O4' - C4' ANGL. DEV. = 5.3 DEGREES REMARK 500 DG T 842 C4' - C3' - O3' ANGL. DEV. = 13.9 DEGREES REMARK 500 DG T 842 C3' - C2' - C1' ANGL. DEV. = 7.5 DEGREES REMARK 500 DG T 842 O4' - C1' - C2' ANGL. DEV. = -8.1 DEGREES REMARK 500 DG T 842 O4' - C1' - N9 ANGL. DEV. = -8.0 DEGREES REMARK 500 DG T 843 O4' - C4' - C3' ANGL. DEV. = 5.7 DEGREES REMARK 500 DG T 843 C4' - C3' - C2' ANGL. DEV. = -11.0 DEGREES REMARK 500 DG T 843 C3' - C2' - C1' ANGL. DEV. = 7.8 DEGREES REMARK 500 DG T 843 O4' - C1' - C2' ANGL. DEV. = -11.7 DEGREES REMARK 500 DG T 843 N9 - C1' - C2' ANGL. DEV. = -14.1 DEGREES REMARK 500 DG T 843 O4' - C1' - N9 ANGL. DEV. = -5.7 DEGREES REMARK 500 DG T 843 C6 - N1 - C2 ANGL. DEV. = -4.1 DEGREES REMARK 500 DG T 843 C2 - N3 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG T 843 C4 - C5 - N7 ANGL. DEV. = -2.9 DEGREES REMARK 500 DG T 843 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 DG T 843 N9 - C4 - C5 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT T 844 C5' - C4' - C3' ANGL. DEV. = -11.5 DEGREES REMARK 500 DT T 844 C6 - N1 - C2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT T 844 N1 - C2 - N3 ANGL. DEV. = 4.6 DEGREES REMARK 500 DT T 844 C4 - C5 - C7 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT T 844 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DC T 846 O4' - C4' - C3' ANGL. DEV. = -3.7 DEGREES REMARK 500 DC T 846 C4' - C3' - C2' ANGL. DEV. = 6.2 DEGREES REMARK 500 DC T 846 O4' - C1' - N1 ANGL. DEV. = -6.6 DEGREES REMARK 500 DC T 846 C6 - N1 - C2 ANGL. DEV. = -2.9 DEGREES REMARK 500 DC T 846 C5 - C6 - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 73 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 -78.70 -103.78 REMARK 500 CYS A 37 52.99 30.01 REMARK 500 GLU A 49 -9.63 -58.46 REMARK 500 ASP A 52 -8.91 52.53 REMARK 500 LYS A 60 -126.89 65.20 REMARK 500 CYS A 88 83.23 -155.08 REMARK 500 SER A 145 48.87 -65.48 REMARK 500 ASP A 146 -58.52 -155.34 REMARK 500 PRO A 215 -81.45 -61.71 REMARK 500 LYS A 271 45.81 -83.77 REMARK 500 GLU A 272 -13.07 -159.86 REMARK 500 LEU A 273 -2.19 -144.86 REMARK 500 ASP A 289 110.73 -166.43 REMARK 500 PHE A 308 96.81 170.69 REMARK 500 LYS A 310 -0.97 82.07 REMARK 500 GLU A 314 38.19 151.18 REMARK 500 VAL A 315 -30.68 168.47 REMARK 500 LYS A 318 -25.28 -146.75 REMARK 500 CYS A 333 -86.45 -40.13 REMARK 500 GLN A 334 -47.25 -22.87 REMARK 500 ARG A 337 148.34 -30.15 REMARK 500 SER A 350 -72.01 -176.29 REMARK 500 LYS A 353 84.03 -47.38 REMARK 500 ASN A 393 -9.37 -44.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 213 LYS A 214 -144.10 REMARK 500 ILE A 346 ARG A 347 149.16 REMARK 500 MET A 380 THR A 381 -149.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG T 843 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 DG T 842 -46.5 D D OUTSIDE RANGE REMARK 500 DG T 843 -53.4 D D OUTSIDE RANGE REMARK 500 ASP A 385 24.1 L L OUTSIDE RANGE REMARK 500 SER A 407 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 988 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH A1026 DISTANCE = 5.32 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 871 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 35 O REMARK 620 2 TTP A 875 O1G 96.3 REMARK 620 3 TTP A 875 O2B 91.1 84.3 REMARK 620 4 TTP A 875 O1A 168.2 91.2 80.5 REMARK 620 5 ASP A 34 OD2 84.2 101.1 173.2 103.4 REMARK 620 6 ASP A 126 OD1 90.3 170.5 88.8 81.3 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 872 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 932 O REMARK 620 2 GLU A 127 OE2 133.2 REMARK 620 3 ASP A 34 OD1 64.9 94.2 REMARK 620 4 ASP A 34 OD2 82.8 112.0 44.5 REMARK 620 5 TTP A 875 O1A 84.8 137.4 123.5 87.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 871 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 872 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 875 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T3N RELATED DB: PDB REMARK 900 RELATED ID: 2ALZ RELATED DB: PDB REMARK 900 RELATED ID: 2DPI RELATED DB: PDB DBREF 2DPJ A 1 420 UNP Q9UNA4 POLI_HUMAN 1 420 DBREF 2DPJ P 867 873 PDB 2DPJ 2DPJ 867 873 DBREF 2DPJ T 839 847 PDB 2DPJ 2DPJ 839 847 SEQRES 1 P 7 DA DG DG DA DC DC DOC SEQRES 1 T 9 DT EDA DG DG DG DT DC DC DT SEQRES 1 A 420 MET GLU LEU ALA ASP VAL GLY ALA ALA ALA SER SER GLN SEQRES 2 A 420 GLY VAL HIS ASP GLN VAL LEU PRO THR PRO ASN ALA SER SEQRES 3 A 420 SER ARG VAL ILE VAL HIS VAL ASP LEU ASP CYS PHE TYR SEQRES 4 A 420 ALA GLN VAL GLU MET ILE SER ASN PRO GLU LEU LYS ASP SEQRES 5 A 420 LYS PRO LEU GLY VAL GLN GLN LYS TYR LEU VAL VAL THR SEQRES 6 A 420 CYS ASN TYR GLU ALA ARG LYS LEU GLY VAL LYS LYS LEU SEQRES 7 A 420 MET ASN VAL ARG ASP ALA LYS GLU LYS CYS PRO GLN LEU SEQRES 8 A 420 VAL LEU VAL ASN GLY GLU ASP LEU THR ARG TYR ARG GLU SEQRES 9 A 420 MET SER TYR LYS VAL THR GLU LEU LEU GLU GLU PHE SER SEQRES 10 A 420 PRO VAL VAL GLU ARG LEU GLY PHE ASP GLU ASN PHE VAL SEQRES 11 A 420 ASP LEU THR GLU MET VAL GLU LYS ARG LEU GLN GLN LEU SEQRES 12 A 420 GLN SER ASP GLU LEU SER ALA VAL THR VAL SER GLY HIS SEQRES 13 A 420 VAL TYR ASN ASN GLN SER ILE ASN LEU LEU ASP VAL LEU SEQRES 14 A 420 HIS ILE ARG LEU LEU VAL GLY SER GLN ILE ALA ALA GLU SEQRES 15 A 420 MET ARG GLU ALA MET TYR ASN GLN LEU GLY LEU THR GLY SEQRES 16 A 420 CYS ALA GLY VAL ALA SER ASN LYS LEU LEU ALA LYS LEU SEQRES 17 A 420 VAL SER GLY VAL PHE LYS PRO ASN GLN GLN THR VAL LEU SEQRES 18 A 420 LEU PRO GLU SER CYS GLN HIS LEU ILE HIS SER LEU ASN SEQRES 19 A 420 HIS ILE LYS GLU ILE PRO GLY ILE GLY TYR LYS THR ALA SEQRES 20 A 420 LYS CYS LEU GLU ALA LEU GLY ILE ASN SER VAL ARG ASP SEQRES 21 A 420 LEU GLN THR PHE SER PRO LYS ILE LEU GLU LYS GLU LEU SEQRES 22 A 420 GLY ILE SER VAL ALA GLN ARG ILE GLN LYS LEU SER PHE SEQRES 23 A 420 GLY GLU ASP ASN SER PRO VAL ILE LEU SER GLY PRO PRO SEQRES 24 A 420 GLN SER PHE SER GLU GLU ASP SER PHE LYS LYS CYS SER SEQRES 25 A 420 SER GLU VAL GLU ALA LYS ASN LYS ILE GLU GLU LEU LEU SEQRES 26 A 420 ALA SER LEU LEU ASN ARG VAL CYS GLN ASP GLY ARG LYS SEQRES 27 A 420 PRO HIS THR VAL ARG LEU ILE ILE ARG ARG TYR SER SER SEQRES 28 A 420 GLU LYS HIS TYR GLY ARG GLU SER ARG GLN CYS PRO ILE SEQRES 29 A 420 PRO SER HIS VAL ILE GLN LYS LEU GLY THR GLY ASN TYR SEQRES 30 A 420 ASP VAL MET THR PRO MET VAL ASP ILE LEU MET LYS LEU SEQRES 31 A 420 PHE ARG ASN MET VAL ASN VAL LYS MET PRO PHE HIS LEU SEQRES 32 A 420 THR LEU LEU SER VAL CYS PHE CYS ASN LEU LYS ALA LEU SEQRES 33 A 420 ASN THR ALA LYS MODRES 2DPJ DOC P 873 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 2DPJ EDA T 840 DA HET DOC P 873 18 HET EDA T 840 23 HET MG A 871 1 HET MG A 872 1 HET TTP A 875 29 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM EDA 3-[2-DEOXY-RIBOFURANOSYL]-3H-1,3,4,5A,8-PENTAAZA-AS- HETNAM 2 EDA INDACENE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 1 DOC C9 H14 N3 O6 P FORMUL 2 EDA C12 H14 N5 O6 P FORMUL 4 MG 2(MG 2+) FORMUL 6 TTP C10 H17 N2 O14 P3 FORMUL 7 HOH *127(H2 O) HELIX 1 1 CYS A 37 ASN A 47 1 11 HELIX 2 2 PRO A 48 LYS A 51 5 4 HELIX 3 3 ASN A 67 LEU A 73 1 7 HELIX 4 4 VAL A 81 GLU A 86 1 6 HELIX 5 5 LEU A 99 SER A 117 1 19 HELIX 6 6 LEU A 132 LEU A 143 1 12 HELIX 7 7 ASN A 159 GLN A 161 5 3 HELIX 8 8 ASP A 167 GLY A 192 1 26 HELIX 9 9 ASN A 202 GLY A 211 1 10 HELIX 10 10 LEU A 222 GLU A 224 5 3 HELIX 11 11 SER A 225 LEU A 233 1 9 HELIX 12 12 HIS A 235 ILE A 239 5 5 HELIX 13 13 THR A 246 LEU A 253 1 8 HELIX 14 14 SER A 257 PHE A 264 1 8 HELIX 15 15 SER A 265 GLU A 270 1 6 HELIX 16 16 LEU A 273 PHE A 286 1 14 HELIX 17 17 LYS A 318 GLY A 336 1 19 HELIX 18 18 PRO A 365 SER A 366 5 2 HELIX 19 19 VAL A 368 GLN A 370 5 3 HELIX 20 20 MET A 380 ASP A 385 1 6 HELIX 21 21 LEU A 387 MET A 388 5 2 HELIX 22 22 LEU A 390 ARG A 392 5 3 SHEET 1 A 6 VAL A 120 LEU A 123 0 SHEET 2 A 6 GLU A 127 ASP A 131 -1 O PHE A 129 N GLU A 121 SHEET 3 A 6 ILE A 30 LEU A 35 -1 N VAL A 33 O ASN A 128 SHEET 4 A 6 GLY A 195 ALA A 200 -1 O CYS A 196 N ASP A 34 SHEET 5 A 6 GLN A 218 VAL A 220 1 O THR A 219 N VAL A 199 SHEET 6 A 6 HIS A 156 VAL A 157 1 N HIS A 156 O GLN A 218 SHEET 1 B 4 MET A 79 ASN A 80 0 SHEET 2 B 4 LEU A 62 CYS A 66 -1 N VAL A 63 O MET A 79 SHEET 3 B 4 LEU A 55 GLN A 59 -1 N VAL A 57 O THR A 65 SHEET 4 B 4 VAL A 92 ASN A 95 1 O VAL A 94 N GLN A 58 SHEET 1 C 4 SER A 301 GLU A 305 0 SHEET 2 C 4 SER A 407 CYS A 411 -1 O PHE A 410 N PHE A 302 SHEET 3 C 4 THR A 341 ILE A 346 -1 N THR A 341 O CYS A 411 SHEET 4 C 4 GLU A 358 PRO A 363 -1 O GLU A 358 N ILE A 346 LINK MG MG A 871 O LEU A 35 1555 1555 2.19 LINK MG MG A 871 O1G TTP A 875 1555 1555 2.29 LINK MG MG A 871 O2B TTP A 875 1555 1555 2.14 LINK MG MG A 871 O1A TTP A 875 1555 1555 2.31 LINK MG MG A 871 OD2 ASP A 34 1555 1555 2.36 LINK MG MG A 871 OD1 ASP A 126 1555 1555 2.23 LINK MG MG A 872 O HOH A 932 1555 1555 2.81 LINK MG MG A 872 OE2 GLU A 127 1555 1555 2.50 LINK MG MG A 872 OD1 ASP A 34 1555 1555 2.65 LINK MG MG A 872 OD2 ASP A 34 1555 1555 3.03 LINK MG MG A 872 O1A TTP A 875 1555 1555 2.19 LINK O3' DC P 872 P DOC P 873 1555 1555 1.56 LINK O3' DT T 839 OP1 EDA T 840 1555 1555 1.78 LINK O3' DT T 839 P EDA T 840 1555 1555 1.35 LINK O3' EDA T 840 P DG T 841 1555 1555 1.35 SITE 1 AC1 5 ASP A 34 LEU A 35 ASP A 126 MG A 872 SITE 2 AC1 5 TTP A 875 SITE 1 AC2 6 ASP A 34 ASP A 126 GLU A 127 MG A 871 SITE 2 AC2 6 TTP A 875 HOH A 932 SITE 1 AC3 22 ASP A 34 LEU A 35 ASP A 36 CYS A 37 SITE 2 AC3 22 PHE A 38 TYR A 39 VAL A 64 THR A 65 SITE 3 AC3 22 TYR A 68 ARG A 71 LYS A 77 ASP A 126 SITE 4 AC3 22 LYS A 214 MG A 871 MG A 872 HOH A 921 SITE 5 AC3 22 HOH A 929 HOH A 932 DOC P 873 EDA T 840 SITE 6 AC3 22 DG T 841 HOH T 903 CRYST1 98.059 98.059 203.102 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010198 0.005888 0.000000 0.00000 SCALE2 0.000000 0.011776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004924 0.00000 MASTER 739 0 5 22 14 0 10 6 0 0 0 35 END