HEADER LYASE 06-MAY-06 2DP5 TITLE STRUCTURE OF STREPTOCOCCUS PYOGENES BACTERIOPHAGE-ASSOCIATED TITLE 2 HYALURONATE LYASE HYLP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYALURONIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET 21D; SOURCE 8 EXPRESSION_SYSTEM_GENE: HYL P2 KEYWDS LYASE, HYALURONAN LYASE, PHAGE TAIL FIBRE, TRIPLE-STRANDED BETA- KEYWDS 2 HELIX, HYALURONIDASE EXPDTA X-RAY DIFFRACTION AUTHOR P.MISHRA,V.BHAKUNI,R.PREM KUMAR,N.SINGH,S.SHARMA,P.KAUR,T.P.SINGH REVDAT 3 13-JUL-11 2DP5 1 VERSN REVDAT 2 24-FEB-09 2DP5 1 VERSN REVDAT 1 30-MAY-06 2DP5 0 JRNL AUTH P.MISHRA,V.BHAKUNI,R.PREM KUMAR,N.SINGH,S.SHARMA,P.KAUR, JRNL AUTH 2 T.P.SINGH JRNL TITL STRUCTURE OF STREPTOCOCCUS PYOGENES BACTERIOPHAGE-ASSOCIATED JRNL TITL 2 HYALURONATE LYASE HYLP2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 4747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 324 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.658 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.718 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.134 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2553 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2296 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3440 ; 1.773 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5382 ; 0.921 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 3.101 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;19.644 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2863 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 480 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 445 ; 0.254 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1977 ; 0.242 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1 ; 0.297 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 129 ; 0.141 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.066 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 140 ; 0.207 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 440 ; 0.287 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.173 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 4 ; 0.065 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1639 ; 1.180 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2614 ; 2.290 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 914 ; 2.307 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 826 ; 4.353 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2DP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5414 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5360 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12800 REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28500 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2C3F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HCL, SODIUM FORMATE, PH 7.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 29.79350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 17.20129 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 196.18200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 29.79350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 17.20129 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 196.18200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 29.79350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 17.20129 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 196.18200 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 29.79350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 17.20129 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 196.18200 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 29.79350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 17.20129 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 196.18200 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 29.79350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 17.20129 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 196.18200 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 34.40257 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 392.36400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 34.40257 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 392.36400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 34.40257 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 392.36400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 34.40257 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 392.36400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 34.40257 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 392.36400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 34.40257 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 392.36400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 57710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -253.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 59.58700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 29.79350 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 51.60386 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 151 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 14 164.58 178.35 REMARK 500 SER A 29 -7.64 79.29 REMARK 500 HIS A 46 -26.11 -141.42 REMARK 500 PRO A 57 153.67 -49.27 REMARK 500 LEU A 58 44.07 -141.01 REMARK 500 ALA A 122 92.57 79.88 REMARK 500 VAL A 124 -9.94 -162.10 REMARK 500 ALA A 125 21.14 49.63 REMARK 500 TYR A 126 -165.87 51.37 REMARK 500 SER A 128 -168.60 69.49 REMARK 500 SER A 129 46.76 -70.08 REMARK 500 THR A 130 27.94 -168.68 REMARK 500 THR A 182 -159.38 -122.74 REMARK 500 HIS A 191 99.61 -63.60 REMARK 500 ALA A 192 164.51 -40.55 REMARK 500 THR A 193 -60.20 -106.57 REMARK 500 PHE A 197 54.61 -105.97 REMARK 500 SER A 198 -140.55 -100.57 REMARK 500 ASP A 239 46.79 -97.04 REMARK 500 ASN A 254 54.73 34.08 REMARK 500 ASP A 303 57.87 -92.07 REMARK 500 LYS A 336 -59.20 -121.08 REMARK 500 LYS A 337 88.27 58.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C3F RELATED DB: PDB DBREF 2DP5 A 7 337 UNP Q9A0M7 Q9A0M7_STRP1 7 337 SEQRES 1 A 332 LEU ARG VAL GLN PHE LYS ARG MET LYS ALA ALA GLU TRP SEQRES 2 A 332 ALA ARG SER ASP VAL ILE LEU LEU GLU SER GLU ILE GLY SEQRES 3 A 332 PHE GLU THR ASP THR GLY PHE ALA ARG ALA GLY ASP GLY SEQRES 4 A 332 HIS ASN ARG PHE SER ASP LEU GLY TYR ILE SER PRO LEU SEQRES 5 A 332 ASP TYR ASN LEU LEU THR ASN LYS PRO ASN ILE ASP GLY SEQRES 6 A 332 LEU ALA THR LYS VAL GLU THR ALA GLN LYS LEU GLN GLN SEQRES 7 A 332 LYS ALA ASP LYS GLU THR VAL TYR THR LYS ALA GLU SER SEQRES 8 A 332 LYS GLN GLU LEU ASP LYS LYS LEU ASN LEU LYS GLY GLY SEQRES 9 A 332 VAL MET THR GLY GLN LEU LYS PHE LYS PRO ALA ALA THR SEQRES 10 A 332 VAL ALA TYR SER SER SER THR GLY GLY ALA VAL ASN ILE SEQRES 11 A 332 ASP LEU SER SER THR ARG GLY ALA GLY VAL VAL VAL TYR SEQRES 12 A 332 SER ASP ASN ASP THR SER ASP GLY PRO LEU MET SER LEU SEQRES 13 A 332 ARG THR GLY LYS GLU THR PHE ASN GLN SER ALA LEU PHE SEQRES 14 A 332 VAL ASP TYR LYS GLY THR THR ASN ALA VAL ASN ILE ALA SEQRES 15 A 332 MET ARG HIS ALA THR THR PRO ASN PHE SER SER ALA LEU SEQRES 16 A 332 ASN ILE THR SER GLY ASN GLU ASN GLY SER ALA MET GLN SEQRES 17 A 332 LEU ARG GLY SER GLU LYS ALA LEU GLY THR LEU LYS ILE SEQRES 18 A 332 THR HIS GLU ASN PRO SER ILE GLY ALA ASP TYR ASP LYS SEQRES 19 A 332 ASN ALA ALA ALA LEU PRO LEU ASP LEU SER LYS ARG GLN SEQRES 20 A 332 ASN GLY ALA GLY THR ALA ALA GLN GLY ILE TYR ILE ASN SEQRES 21 A 332 SER THR SER GLY THR THR GLY LYS LEU LEU ARG ILE ARG SEQRES 22 A 332 ASN LEU SER ASP ASP LYS PHE TYR VAL LYS SER ASP GLY SEQRES 23 A 332 GLY PHE TYR ALA LYS GLU THR SER GLN ILE ASP GLY ASN SEQRES 24 A 332 LEU LYS LEU LYS ASP PRO THR ALA ASN ASP HIS ALA ALA SEQRES 25 A 332 THR LYS ALA TYR VAL ASP LYS ALA ILE SER GLU LEU LYS SEQRES 26 A 332 LYS LEU ILE LEU LYS LYS HIS FORMUL 2 HOH *16(H2 O) HELIX 1 1 LYS A 15 ARG A 21 1 7 HELIX 2 2 ARG A 48 LEU A 52 5 5 HELIX 3 3 ASP A 59 LEU A 63 5 5 HELIX 4 4 ASN A 68 LEU A 72 5 5 HELIX 5 5 THR A 74 GLN A 83 1 10 HELIX 6 6 ASP A 87 VAL A 91 5 5 HELIX 7 7 THR A 93 ASP A 102 1 10 HELIX 8 8 THR A 319 LEU A 335 1 17 SHEET 1 A 3 LYS A 12 MET A 14 0 SHEET 2 A 3 ILE A 31 GLU A 34 1 O PHE A 33 N LYS A 12 SHEET 3 A 3 ALA A 40 ALA A 42 -1 O ARG A 41 N GLY A 32 SHEET 1 B 3 LEU A 276 ARG A 279 0 SHEET 2 B 3 ASP A 284 VAL A 288 -1 O PHE A 286 N ILE A 278 SHEET 3 B 3 PHE A 294 ALA A 296 -1 O TYR A 295 N TYR A 287 CRYST1 59.587 59.587 588.546 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016782 0.009689 0.000000 0.00000 SCALE2 0.000000 0.019378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001699 0.00000 MASTER 357 0 0 8 6 0 0 6 0 0 0 26 END