HEADER TRANSPORT PROTEIN 26-APR-06 2DNW TITLE SOLUTION STRUCTURE OF RSGI RUH-059, AN ACP DOMAIN OF ACYL TITLE 2 CARRIER PROTEIN, MITOCHONDRIAL [PRECURSOR] FROM HUMAN CDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL CARRIER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ACYL CARRIER PROTEIN; COMPND 5 SYNONYM: ACP, NADH-UBIQUINONE OXIDOREDUCTASE 9.6 KDA COMPND 6 SUBUNIT, CI-SDAP; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NDUFAB1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050704-29; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ACYL CARRIER PROTEIN, ACP, FATTY ACID BIOSYNTHESIS, KEYWDS 2 MITOCHONDRIA, NADH:UBIQUINONE OXIDEREDUCTASE, STRUCTURAL KEYWDS 3 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.ABE,H.HIROTA,C.KUROSAKI,M.YOSHIDA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2DNW 1 VERSN REVDAT 1 26-OCT-06 2DNW 0 JRNL AUTH T.ABE,H.HIROTA,C.KUROSAKI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-059, AN ACP DOMAIN JRNL TITL 2 OF ACYL CARRIER PROTEIN, MITOCHONDRIAL [PRECURSOR] JRNL TITL 3 FROM HUMAN CDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.8 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025634. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.91MM RSGI RUH-059 U-15N, REMARK 210 13C; 20MM D-TRIS-HCL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 10% D2O, 90% REMARK 210 H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DELTA NMR 4.3.2, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 85.42 51.93 REMARK 500 1 SER A 6 102.73 -165.36 REMARK 500 1 PRO A 9 168.28 -47.95 REMARK 500 1 PRO A 10 175.94 -47.95 REMARK 500 1 HIS A 40 175.57 -59.96 REMARK 500 1 ASP A 44 -72.88 -110.68 REMARK 500 1 LYS A 89 82.50 41.24 REMARK 500 1 ASP A 90 148.71 61.70 REMARK 500 1 TYR A 92 37.33 -88.89 REMARK 500 1 SER A 94 170.75 -52.63 REMARK 500 1 PRO A 96 78.15 -69.74 REMARK 500 2 SER A 2 125.32 -171.68 REMARK 500 2 SER A 5 105.34 -165.07 REMARK 500 2 PRO A 9 162.38 -48.00 REMARK 500 2 PRO A 10 173.30 -47.95 REMARK 500 2 LEU A 35 149.56 -39.42 REMARK 500 2 VAL A 37 -30.35 -39.70 REMARK 500 2 ASP A 44 -68.83 -156.81 REMARK 500 2 PRO A 68 -179.54 -69.72 REMARK 500 2 LYS A 89 81.68 41.10 REMARK 500 2 TYR A 92 35.32 -89.74 REMARK 500 2 SER A 98 168.65 65.92 REMARK 500 3 SER A 5 166.80 176.82 REMARK 500 3 PRO A 9 169.93 -47.86 REMARK 500 3 PRO A 10 179.63 -48.02 REMARK 500 3 ASP A 44 -83.80 -62.47 REMARK 500 3 VAL A 91 37.29 -151.31 REMARK 500 3 SER A 97 170.75 179.79 REMARK 500 4 SER A 2 154.69 62.54 REMARK 500 4 SER A 3 154.54 64.24 REMARK 500 4 SER A 6 -58.08 -144.08 REMARK 500 4 PRO A 9 173.78 -48.03 REMARK 500 4 PRO A 10 180.00 -48.08 REMARK 500 4 LEU A 35 152.72 -40.31 REMARK 500 4 VAL A 37 -30.93 -39.95 REMARK 500 4 MET A 42 -44.81 -144.65 REMARK 500 4 ASP A 44 -65.64 -108.51 REMARK 500 4 LEU A 45 -77.05 -42.37 REMARK 500 4 TYR A 92 44.99 -108.66 REMARK 500 4 GLU A 93 -58.41 72.55 REMARK 500 4 SER A 94 -52.77 -159.56 REMARK 500 4 SER A 97 -65.62 175.40 REMARK 500 4 SER A 98 97.18 54.21 REMARK 500 5 SER A 2 116.45 -161.25 REMARK 500 5 SER A 3 138.36 -171.21 REMARK 500 5 SER A 6 94.02 -179.22 REMARK 500 5 PRO A 9 152.90 -48.03 REMARK 500 5 PRO A 10 152.41 -48.01 REMARK 500 5 THR A 12 -166.65 46.16 REMARK 500 5 LEU A 35 152.63 -39.51 REMARK 500 5 ASN A 38 58.39 -118.98 REMARK 500 5 MET A 42 -44.82 -138.61 REMARK 500 5 ASP A 44 -71.44 -106.04 REMARK 500 5 VAL A 91 35.56 -147.87 REMARK 500 5 SER A 94 143.35 -173.16 REMARK 500 5 SER A 98 92.65 58.57 REMARK 500 6 SER A 2 97.77 56.97 REMARK 500 6 PRO A 9 170.25 -47.95 REMARK 500 6 PRO A 10 157.79 -47.90 REMARK 500 6 ASN A 38 55.85 -118.05 REMARK 500 6 MET A 42 -48.75 -139.81 REMARK 500 6 ASP A 44 -71.89 -83.28 REMARK 500 6 LEU A 45 -74.43 -40.01 REMARK 500 6 TYR A 92 36.13 -99.86 REMARK 500 6 PRO A 96 58.05 -69.81 REMARK 500 6 SER A 97 -83.03 60.28 REMARK 500 6 SER A 98 144.20 83.36 REMARK 500 7 PRO A 9 164.03 -47.98 REMARK 500 7 PRO A 10 178.98 -48.07 REMARK 500 7 MET A 42 -56.91 -144.86 REMARK 500 7 ASP A 44 -67.12 -97.41 REMARK 500 7 TYR A 92 41.67 -87.35 REMARK 500 7 SER A 98 100.05 55.86 REMARK 500 8 PRO A 9 156.05 -47.98 REMARK 500 8 PRO A 10 -179.97 -47.93 REMARK 500 8 LEU A 35 154.11 -48.61 REMARK 500 8 SER A 36 144.74 -174.95 REMARK 500 8 MET A 42 -47.51 -143.66 REMARK 500 8 ASP A 44 -64.46 -100.14 REMARK 500 8 LEU A 45 -77.70 -50.53 REMARK 500 8 VAL A 91 36.14 -143.87 REMARK 500 8 TYR A 92 41.01 -88.16 REMARK 500 8 SER A 94 -59.96 -136.90 REMARK 500 8 SER A 98 152.44 62.55 REMARK 500 9 PRO A 9 152.52 -47.96 REMARK 500 9 PRO A 10 173.93 -48.01 REMARK 500 9 LEU A 35 104.70 -43.05 REMARK 500 9 ASN A 38 51.32 -101.95 REMARK 500 9 ASP A 44 -85.46 -74.32 REMARK 500 9 LEU A 45 -74.07 -42.11 REMARK 500 9 LYS A 89 68.21 39.77 REMARK 500 9 TYR A 92 34.57 -91.51 REMARK 500 9 GLU A 93 85.06 49.26 REMARK 500 9 SER A 94 163.17 -47.26 REMARK 500 10 SER A 2 166.51 62.51 REMARK 500 10 SER A 3 83.32 65.90 REMARK 500 10 SER A 6 -59.32 -162.47 REMARK 500 10 PRO A 9 165.93 -47.93 REMARK 500 10 PRO A 10 177.76 -48.02 REMARK 500 10 GLU A 14 -29.22 -39.54 REMARK 500 10 VAL A 20 -31.63 -39.85 REMARK 500 10 SER A 36 143.62 -170.31 REMARK 500 10 MET A 42 -45.02 -139.90 REMARK 500 10 ASP A 44 -65.33 -99.51 REMARK 500 10 LEU A 45 -80.11 -49.76 REMARK 500 10 ASP A 90 83.10 44.70 REMARK 500 10 VAL A 91 33.72 -93.84 REMARK 500 10 GLU A 93 73.32 -67.07 REMARK 500 10 SER A 94 169.93 179.36 REMARK 500 10 PRO A 96 -179.24 -69.79 REMARK 500 10 SER A 98 90.41 39.49 REMARK 500 11 SER A 3 144.57 61.76 REMARK 500 11 SER A 6 104.86 -160.06 REMARK 500 11 MET A 8 87.60 -158.91 REMARK 500 11 PRO A 9 163.93 -47.90 REMARK 500 11 PRO A 10 178.91 -47.94 REMARK 500 11 LEU A 11 -168.55 -104.02 REMARK 500 11 GLU A 14 -31.81 -39.56 REMARK 500 11 SER A 36 146.53 174.41 REMARK 500 11 ASN A 38 49.12 -98.99 REMARK 500 11 ASP A 44 -81.64 -129.74 REMARK 500 11 TYR A 92 87.10 30.65 REMARK 500 11 SER A 97 -47.64 -151.09 REMARK 500 12 SER A 3 83.61 -156.63 REMARK 500 12 SER A 6 111.09 67.42 REMARK 500 12 PRO A 9 155.18 -47.93 REMARK 500 12 PRO A 10 -179.97 -47.85 REMARK 500 12 GLU A 14 -30.26 -38.56 REMARK 500 12 HIS A 40 -167.80 -63.38 REMARK 500 12 PHE A 41 -39.45 -130.64 REMARK 500 12 LYS A 43 -76.20 -93.05 REMARK 500 12 ASP A 44 -78.29 -61.47 REMARK 500 12 PRO A 68 -179.90 -69.69 REMARK 500 12 LYS A 89 72.02 40.23 REMARK 500 12 ASP A 90 140.46 64.06 REMARK 500 12 TYR A 92 83.91 30.57 REMARK 500 12 GLU A 93 121.84 -177.45 REMARK 500 12 SER A 94 78.34 41.17 REMARK 500 13 SER A 2 -57.88 -176.49 REMARK 500 13 SER A 3 100.86 -168.51 REMARK 500 13 SER A 5 170.43 56.40 REMARK 500 13 PRO A 9 153.16 -47.89 REMARK 500 13 PRO A 10 173.77 -48.05 REMARK 500 13 LEU A 35 98.32 -49.41 REMARK 500 13 ASN A 38 44.94 -86.08 REMARK 500 13 MET A 42 -51.85 -149.12 REMARK 500 13 ASP A 90 172.79 -57.12 REMARK 500 13 VAL A 91 30.57 -91.86 REMARK 500 13 TYR A 92 42.54 -86.21 REMARK 500 13 PRO A 96 52.59 -69.70 REMARK 500 13 SER A 97 79.16 41.86 REMARK 500 13 SER A 98 143.47 67.19 REMARK 500 14 SER A 5 132.87 62.31 REMARK 500 14 PRO A 9 162.75 -47.96 REMARK 500 14 PRO A 10 166.15 -47.92 REMARK 500 14 LYS A 43 -82.27 -100.79 REMARK 500 14 LYS A 89 83.17 40.42 REMARK 500 14 ASP A 90 104.08 -47.66 REMARK 500 14 TYR A 92 85.45 30.76 REMARK 500 14 SER A 94 171.04 55.30 REMARK 500 15 SER A 2 94.88 46.65 REMARK 500 15 MET A 8 -53.77 164.81 REMARK 500 15 PRO A 10 176.84 -47.96 REMARK 500 15 ASP A 28 -68.09 66.62 REMARK 500 15 SER A 36 142.90 -179.13 REMARK 500 15 ASN A 38 45.56 -86.84 REMARK 500 15 MET A 42 -46.38 -150.95 REMARK 500 15 LYS A 89 81.91 40.53 REMARK 500 15 TYR A 92 39.08 -90.39 REMARK 500 15 GLU A 93 -54.34 -132.03 REMARK 500 15 SER A 98 142.63 61.87 REMARK 500 16 SER A 2 147.18 62.06 REMARK 500 16 SER A 6 -63.42 -136.51 REMARK 500 16 MET A 8 -53.86 165.07 REMARK 500 16 PRO A 9 161.76 -47.95 REMARK 500 16 PRO A 10 165.88 -48.02 REMARK 500 16 ASN A 38 53.23 -108.11 REMARK 500 16 MET A 42 -68.28 -140.65 REMARK 500 16 ASP A 44 -76.70 -79.83 REMARK 500 16 LEU A 45 -75.81 -40.01 REMARK 500 16 LYS A 89 47.65 27.07 REMARK 500 16 ASP A 90 96.99 65.85 REMARK 500 16 TYR A 92 47.45 -82.93 REMARK 500 16 PRO A 96 73.20 -69.83 REMARK 500 16 SER A 98 83.21 48.85 REMARK 500 17 SER A 5 112.69 65.05 REMARK 500 17 MET A 8 -54.01 165.95 REMARK 500 17 PRO A 9 168.46 -47.95 REMARK 500 17 PRO A 10 179.87 -47.95 REMARK 500 17 ASN A 38 48.48 -108.34 REMARK 500 17 MET A 42 -45.79 -138.72 REMARK 500 17 LYS A 43 -70.87 -75.65 REMARK 500 17 ASP A 44 -89.95 -66.95 REMARK 500 17 ASP A 90 116.31 69.73 REMARK 500 17 TYR A 92 87.45 30.99 REMARK 500 17 SER A 98 -58.58 -141.11 REMARK 500 18 SER A 3 122.29 64.51 REMARK 500 18 PRO A 9 158.23 -47.82 REMARK 500 18 PRO A 10 178.79 -48.02 REMARK 500 18 SER A 39 147.50 -33.19 REMARK 500 18 MET A 42 -62.72 -126.49 REMARK 500 18 LYS A 43 -76.53 -36.07 REMARK 500 18 ASP A 44 -75.03 -77.21 REMARK 500 18 LEU A 45 -74.20 -38.52 REMARK 500 18 GLU A 66 36.52 37.56 REMARK 500 18 ILE A 67 136.00 -39.63 REMARK 500 18 PRO A 68 -179.07 -69.70 REMARK 500 18 TYR A 92 36.35 -89.48 REMARK 500 18 PRO A 96 79.02 -69.87 REMARK 500 19 SER A 2 99.95 68.71 REMARK 500 19 SER A 3 80.22 -172.61 REMARK 500 19 SER A 6 141.59 70.46 REMARK 500 19 MET A 8 66.99 38.21 REMARK 500 19 PRO A 9 168.52 -48.02 REMARK 500 19 PRO A 10 -179.88 -48.01 REMARK 500 19 MET A 42 -51.10 -139.67 REMARK 500 19 ASP A 44 -66.66 -98.90 REMARK 500 19 LEU A 45 -83.83 -41.35 REMARK 500 19 ASP A 90 -178.24 -53.11 REMARK 500 19 TYR A 92 -92.00 -128.76 REMARK 500 19 GLU A 93 108.52 64.34 REMARK 500 20 SER A 2 109.10 -178.47 REMARK 500 20 SER A 3 107.76 -171.66 REMARK 500 20 SER A 5 -68.56 179.36 REMARK 500 20 SER A 6 125.05 64.15 REMARK 500 20 PRO A 9 160.83 -48.01 REMARK 500 20 PRO A 10 167.89 -47.90 REMARK 500 20 ASN A 38 49.19 -95.62 REMARK 500 20 HIS A 40 -170.98 -67.72 REMARK 500 20 LYS A 43 -78.37 -78.81 REMARK 500 20 ASP A 44 -78.15 -63.53 REMARK 500 20 LYS A 89 79.86 43.14 REMARK 500 20 VAL A 91 30.53 -91.90 REMARK 500 20 TYR A 92 44.67 -84.92 REMARK 500 20 SER A 97 85.93 47.44 REMARK 500 20 SER A 98 85.74 43.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001002976.1 RELATED DB: TARGETDB DBREF 2DNW A 8 93 UNP O14561 ACPM_HUMAN 69 156 SEQADV 2DNW GLY A 1 UNP O14561 CLONING ARTIFACT SEQADV 2DNW SER A 2 UNP O14561 CLONING ARTIFACT SEQADV 2DNW SER A 3 UNP O14561 CLONING ARTIFACT SEQADV 2DNW GLY A 4 UNP O14561 CLONING ARTIFACT SEQADV 2DNW SER A 5 UNP O14561 CLONING ARTIFACT SEQADV 2DNW SER A 6 UNP O14561 CLONING ARTIFACT SEQADV 2DNW GLY A 7 UNP O14561 CLONING ARTIFACT SEQADV 2DNW SER A 94 UNP O14561 CLONING ARTIFACT SEQADV 2DNW GLY A 95 UNP O14561 CLONING ARTIFACT SEQADV 2DNW PRO A 96 UNP O14561 CLONING ARTIFACT SEQADV 2DNW SER A 97 UNP O14561 CLONING ARTIFACT SEQADV 2DNW SER A 98 UNP O14561 CLONING ARTIFACT SEQADV 2DNW GLY A 99 UNP O14561 CLONING ARTIFACT SEQRES 1 A 99 GLY SER SER GLY SER SER GLY MET PRO PRO LEU THR LEU SEQRES 2 A 99 GLU GLY ILE GLN ASP ARG VAL LEU TYR VAL LEU LYS LEU SEQRES 3 A 99 TYR ASP LYS ILE ASP PRO GLU LYS LEU SER VAL ASN SER SEQRES 4 A 99 HIS PHE MET LYS ASP LEU GLY LEU ASP SER LEU ASP GLN SEQRES 5 A 99 VAL GLU ILE ILE MET ALA MET GLU ASP GLU PHE GLY PHE SEQRES 6 A 99 GLU ILE PRO ASP ILE ASP ALA GLU LYS LEU MET CYS PRO SEQRES 7 A 99 GLN GLU ILE VAL ASP TYR ILE ALA ASP LYS LYS ASP VAL SEQRES 8 A 99 TYR GLU SER GLY PRO SER SER GLY HELIX 1 1 THR A 12 TYR A 27 1 16 HELIX 2 2 ASP A 48 PHE A 63 1 16 HELIX 3 3 PRO A 68 GLU A 73 1 6 HELIX 4 4 CYS A 77 LYS A 89 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 310 0 0 4 0 0 0 6 0 0 0 8 END