HEADER PROTEIN BINDING 20-APR-06 2DM8 TITLE SOLUTION STRUCTURE OF THE EIGHTH PDZ DOMAIN OF HUMAN INAD- TITLE 2 LIKE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INAD-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: INADL PROTEIN, HINADL, PALS1-ASSOCIATED TIGHT COMPND 6 JUNCTION PROTEIN, PROTEIN ASSOCIATED TO TIGHT JUNCTIONS; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INADL, PATJ; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050627-18; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, INAD-LIKE PROTEIN, INADL PROTEIN, HINADL, PALS1- KEYWDS 2 ASSOCIATED TIGHT JUNCTION PROTEIN, PROTEIN ASSOCIATED TO KEYWDS 3 TIGHT JUNCTIONS, INADL, PATJ, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 4 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 5 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 6 RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2DM8 1 VERSN REVDAT 1 20-OCT-06 2DM8 0 JRNL AUTH K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE EIGHTH PDZ DOMAIN OF JRNL TITL 2 HUMAN INAD-LIKE PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DM8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025579. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM U-15N, 13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.93191, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 27 -67.56 -124.05 REMARK 500 1 ASP A 39 27.26 39.65 REMARK 500 1 PRO A 41 2.39 -69.76 REMARK 500 1 GLU A 53 43.88 -91.76 REMARK 500 1 ARG A 77 -18.84 -49.87 REMARK 500 1 PRO A 92 -164.33 -69.73 REMARK 500 1 GLU A 103 47.35 -108.98 REMARK 500 1 TYR A 106 81.65 -68.72 REMARK 500 1 ARG A 107 100.48 -39.91 REMARK 500 1 GLU A 109 73.06 -113.91 REMARK 500 2 SER A 6 117.94 -35.66 REMARK 500 2 PRO A 12 -176.47 -69.82 REMARK 500 2 GLU A 18 98.08 -57.55 REMARK 500 2 ASN A 43 32.76 -85.44 REMARK 500 2 TYR A 51 100.58 -37.59 REMARK 500 2 GLU A 53 44.06 -97.83 REMARK 500 2 ALA A 55 -63.95 -103.64 REMARK 500 2 ALA A 56 -36.28 -38.49 REMARK 500 2 HIS A 81 -72.56 -43.54 REMARK 500 2 PRO A 92 -164.44 -69.79 REMARK 500 2 HIS A 105 128.86 -39.47 REMARK 500 2 SER A 114 110.45 -37.95 REMARK 500 3 SER A 6 120.73 -172.23 REMARK 500 3 THR A 10 -39.31 -37.20 REMARK 500 3 PRO A 12 -169.07 -69.77 REMARK 500 3 ARG A 27 -63.88 -123.03 REMARK 500 3 LYS A 38 -72.82 -72.90 REMARK 500 3 ASP A 39 -29.01 -38.52 REMARK 500 3 PRO A 41 1.68 -69.78 REMARK 500 3 ALA A 44 137.83 -171.99 REMARK 500 3 TYR A 51 106.06 -46.45 REMARK 500 3 ALA A 64 109.25 -51.83 REMARK 500 3 PRO A 92 -169.06 -69.80 REMARK 500 3 GLU A 103 43.48 -104.15 REMARK 500 3 HIS A 105 52.13 73.88 REMARK 500 4 THR A 10 27.83 43.41 REMARK 500 4 PRO A 41 1.72 -69.77 REMARK 500 4 GLU A 53 42.64 -81.97 REMARK 500 4 SER A 79 157.99 -43.84 REMARK 500 4 HIS A 81 -74.72 -41.55 REMARK 500 4 PRO A 92 -163.91 -69.78 REMARK 500 4 ASP A 102 161.53 -48.79 REMARK 500 5 SER A 5 82.69 -60.85 REMARK 500 5 PRO A 8 2.94 -69.78 REMARK 500 5 PRO A 12 -164.66 -69.76 REMARK 500 5 PRO A 15 -174.30 -69.77 REMARK 500 5 ASP A 39 32.84 36.07 REMARK 500 5 ASN A 43 32.54 -89.31 REMARK 500 5 ALA A 56 -29.01 -36.77 REMARK 500 5 ALA A 64 109.85 -56.34 REMARK 500 5 ASN A 72 32.79 38.91 REMARK 500 5 PRO A 92 -164.63 -69.74 REMARK 500 5 GLU A 103 42.74 -88.57 REMARK 500 5 HIS A 105 99.66 -38.94 REMARK 500 5 ARG A 107 92.54 -59.84 REMARK 500 5 ASP A 108 149.08 -37.21 REMARK 500 5 SER A 114 103.25 -59.70 REMARK 500 6 LYS A 38 -66.16 -101.58 REMARK 500 6 PRO A 41 2.09 -69.72 REMARK 500 6 ALA A 44 140.00 -174.98 REMARK 500 6 TYR A 51 110.52 -36.69 REMARK 500 6 GLU A 53 49.84 -100.53 REMARK 500 6 SER A 79 170.54 -55.60 REMARK 500 6 HIS A 81 -74.37 -49.07 REMARK 500 6 PRO A 92 -165.17 -69.71 REMARK 500 7 SER A 3 -57.16 -128.48 REMARK 500 7 PRO A 12 -174.43 -69.81 REMARK 500 7 GLU A 18 98.81 -64.70 REMARK 500 7 ASN A 43 29.67 48.06 REMARK 500 7 ALA A 44 139.91 -173.79 REMARK 500 7 GLU A 53 40.48 -96.10 REMARK 500 7 PRO A 92 -165.29 -69.76 REMARK 500 7 ASP A 102 154.79 -48.59 REMARK 500 8 PRO A 12 -179.94 -69.79 REMARK 500 8 LYS A 25 177.25 -48.17 REMARK 500 8 SER A 28 -54.32 -121.00 REMARK 500 8 LYS A 38 -73.52 -120.35 REMARK 500 8 PRO A 41 2.44 -69.77 REMARK 500 8 HIS A 48 -70.05 -53.47 REMARK 500 8 ALA A 64 107.17 -50.14 REMARK 500 8 ARG A 77 -29.65 -38.92 REMARK 500 8 PRO A 92 -163.77 -69.79 REMARK 500 8 ASP A 102 163.86 -48.72 REMARK 500 8 GLU A 109 99.51 -54.78 REMARK 500 9 THR A 10 40.44 -100.28 REMARK 500 9 LYS A 38 -50.40 -126.05 REMARK 500 9 ASN A 43 29.59 43.49 REMARK 500 9 TYR A 51 108.65 -46.28 REMARK 500 9 GLU A 53 38.14 -85.29 REMARK 500 9 ASP A 66 173.24 -57.69 REMARK 500 9 SER A 79 174.68 -58.00 REMARK 500 9 PRO A 92 -166.30 -69.79 REMARK 500 9 ASP A 102 159.88 -45.64 REMARK 500 9 SER A 114 111.73 -38.82 REMARK 500 10 LYS A 25 170.94 -47.52 REMARK 500 10 ALA A 44 130.78 -170.76 REMARK 500 10 ARG A 61 -61.49 -107.95 REMARK 500 10 PRO A 92 -169.26 -69.77 REMARK 500 10 GLU A 103 47.24 -88.99 REMARK 500 10 ALA A 104 -70.65 -96.76 REMARK 500 10 SER A 111 43.79 34.57 REMARK 500 11 PRO A 12 -173.36 -69.77 REMARK 500 11 ARG A 27 44.23 33.46 REMARK 500 11 SER A 28 110.26 -170.11 REMARK 500 11 LEU A 30 148.00 -34.83 REMARK 500 11 PRO A 41 1.24 -69.78 REMARK 500 11 TYR A 51 130.54 -34.44 REMARK 500 11 HIS A 81 -39.42 -34.44 REMARK 500 11 PRO A 92 -167.22 -69.72 REMARK 500 11 SER A 114 155.42 -41.21 REMARK 500 12 ILE A 13 108.83 -32.56 REMARK 500 12 ASP A 39 27.48 49.28 REMARK 500 12 PRO A 41 2.67 -69.78 REMARK 500 12 TYR A 51 101.67 -47.25 REMARK 500 12 GLU A 53 41.26 -89.44 REMARK 500 12 PRO A 92 -165.64 -69.79 REMARK 500 12 ASP A 108 173.07 -50.95 REMARK 500 13 SER A 2 77.62 -100.37 REMARK 500 13 PRO A 8 2.71 -69.79 REMARK 500 13 THR A 10 -51.75 -131.86 REMARK 500 13 LEU A 30 -65.71 -124.47 REMARK 500 13 PRO A 41 2.83 -69.66 REMARK 500 13 TYR A 51 96.33 -52.29 REMARK 500 13 GLU A 52 -19.03 -49.70 REMARK 500 13 GLU A 53 37.94 -84.83 REMARK 500 13 ALA A 56 -27.44 -38.46 REMARK 500 13 ALA A 64 92.77 -50.89 REMARK 500 13 ASN A 72 29.41 40.99 REMARK 500 13 ASP A 108 -177.88 -66.34 REMARK 500 13 SER A 111 116.13 -39.74 REMARK 500 14 SER A 3 -53.85 -121.03 REMARK 500 14 ARG A 27 30.90 36.65 REMARK 500 14 LEU A 30 134.26 -34.64 REMARK 500 14 LYS A 38 -73.62 -99.93 REMARK 500 14 PRO A 41 2.23 -69.70 REMARK 500 14 ASN A 43 30.52 -86.49 REMARK 500 14 GLU A 53 48.81 -94.75 REMARK 500 14 ASN A 72 27.22 47.71 REMARK 500 14 SER A 79 150.61 -49.57 REMARK 500 14 SER A 80 -175.35 -66.70 REMARK 500 14 PRO A 92 -165.94 -69.74 REMARK 500 14 PRO A 113 90.92 -69.78 REMARK 500 14 SER A 114 92.76 -65.10 REMARK 500 15 PRO A 12 -172.64 -69.76 REMARK 500 15 LEU A 30 141.45 -36.84 REMARK 500 15 PRO A 92 -164.17 -69.76 REMARK 500 15 ASP A 102 152.36 -45.64 REMARK 500 15 HIS A 105 50.60 39.48 REMARK 500 16 THR A 10 42.29 37.81 REMARK 500 16 PRO A 12 -174.38 -69.77 REMARK 500 16 PRO A 41 2.15 -69.75 REMARK 500 16 TYR A 51 101.59 -40.86 REMARK 500 16 GLU A 53 48.46 -90.37 REMARK 500 16 ARG A 58 -36.08 -39.25 REMARK 500 16 PRO A 92 -165.04 -69.76 REMARK 500 16 ASP A 102 154.51 -47.01 REMARK 500 17 PRO A 8 -162.52 -69.80 REMARK 500 17 ALA A 9 36.70 74.99 REMARK 500 17 ILE A 13 127.52 -36.49 REMARK 500 17 ASP A 39 33.53 -84.62 REMARK 500 17 ASN A 43 36.53 -85.73 REMARK 500 17 ARG A 61 -60.45 -100.16 REMARK 500 17 ALA A 64 108.44 -52.71 REMARK 500 17 ARG A 77 -37.13 -34.02 REMARK 500 17 SER A 79 157.09 -44.63 REMARK 500 17 SER A 114 -53.07 -121.33 REMARK 500 18 SER A 2 138.01 -35.29 REMARK 500 18 SER A 3 154.22 -41.31 REMARK 500 18 ILE A 13 95.73 -59.07 REMARK 500 18 LYS A 38 -69.55 -92.11 REMARK 500 18 TYR A 51 128.13 -39.82 REMARK 500 18 GLU A 53 33.49 -89.33 REMARK 500 18 ALA A 56 -39.81 -35.27 REMARK 500 18 ARG A 58 -37.31 -39.43 REMARK 500 18 ALA A 64 103.92 -59.61 REMARK 500 18 PRO A 92 -164.24 -69.79 REMARK 500 18 HIS A 105 41.94 -105.37 REMARK 500 19 LYS A 25 114.82 -39.11 REMARK 500 19 LEU A 30 152.01 -47.53 REMARK 500 19 ASP A 39 45.78 -93.64 REMARK 500 19 ASN A 43 32.80 39.31 REMARK 500 19 ALA A 64 108.05 -50.71 REMARK 500 19 PRO A 92 -169.92 -69.77 REMARK 500 20 SER A 3 104.49 -41.89 REMARK 500 20 ALA A 9 -61.68 -106.17 REMARK 500 20 PRO A 12 -165.45 -69.75 REMARK 500 20 ASP A 39 44.08 -80.33 REMARK 500 20 PRO A 41 0.14 -69.75 REMARK 500 20 ALA A 44 140.20 -171.11 REMARK 500 20 TYR A 51 104.40 -35.03 REMARK 500 20 GLU A 53 55.08 -99.34 REMARK 500 20 ARG A 58 -37.53 -39.26 REMARK 500 20 ALA A 64 109.07 -50.14 REMARK 500 20 PRO A 92 -170.53 -69.81 REMARK 500 20 ASP A 102 154.75 -48.94 REMARK 500 20 HIS A 105 110.71 -34.24 REMARK 500 20 SER A 111 159.73 -45.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003006830.5 RELATED DB: TARGETDB DBREF 2DM8 A 8 110 UNP Q8NI35 INADL_HUMAN 1425 1527 SEQADV 2DM8 GLY A 1 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 2 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 3 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 GLY A 4 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 5 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 6 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 GLY A 7 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 111 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 GLY A 112 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 PRO A 113 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 114 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 115 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 GLY A 116 UNP Q8NI35 CLONING ARTIFACT SEQRES 1 A 116 GLY SER SER GLY SER SER GLY PRO ALA THR CYS PRO ILE SEQRES 2 A 116 VAL PRO GLY GLN GLU MET ILE ILE GLU ILE SER LYS GLY SEQRES 3 A 116 ARG SER GLY LEU GLY LEU SER ILE VAL GLY GLY LYS ASP SEQRES 4 A 116 THR PRO LEU ASN ALA ILE VAL ILE HIS GLU VAL TYR GLU SEQRES 5 A 116 GLU GLY ALA ALA ALA ARG ASP GLY ARG LEU TRP ALA GLY SEQRES 6 A 116 ASP GLN ILE LEU GLU VAL ASN GLY VAL ASP LEU ARG ASN SEQRES 7 A 116 SER SER HIS GLU GLU ALA ILE THR ALA LEU ARG GLN THR SEQRES 8 A 116 PRO GLN LYS VAL ARG LEU VAL VAL TYR ARG ASP GLU ALA SEQRES 9 A 116 HIS TYR ARG ASP GLU GLU SER GLY PRO SER SER GLY HELIX 1 1 GLY A 54 GLY A 60 1 7 HELIX 2 2 SER A 80 GLN A 90 1 11 SHEET 1 A 5 MET A 19 SER A 24 0 SHEET 2 A 5 LYS A 94 TYR A 100 -1 O VAL A 95 N ILE A 23 SHEET 3 A 5 GLN A 67 VAL A 71 -1 N LEU A 69 O VAL A 98 SHEET 4 A 5 ILE A 45 VAL A 46 -1 O ILE A 45 N ILE A 68 SHEET 5 A 5 ILE A 34 VAL A 35 -1 SHEET 1 B 4 MET A 19 SER A 24 0 SHEET 2 B 4 LYS A 94 TYR A 100 -1 O VAL A 95 N ILE A 23 SHEET 3 B 4 GLN A 67 VAL A 71 -1 N LEU A 69 O VAL A 98 SHEET 4 B 4 VAL A 74 ASP A 75 -1 O VAL A 74 N VAL A 71 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 271 0 0 2 9 0 0 6 0 0 0 9 END