HEADER HYDROLASE 18-APR-06 2DLH TITLE SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF HUMAN TITLE 2 RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3, FIBRONECTIN TYPE-III; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE DELTA, R-PTP-DELTA; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRD; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050302-29; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS PROTEIN-TYROSINE PHOSPHATASE DELTA, R-PTP-DELTA, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SEIMIYA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2DLH 1 VERSN REVDAT 1 18-OCT-06 2DLH 0 JRNL AUTH K.SEIMIYA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF JRNL TITL 2 HUMAN RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE JRNL TITL 3 DELTA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DLH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025554. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.33MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9742, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 76.92 -108.64 REMARK 500 1 VAL A 9 74.91 59.26 REMARK 500 1 THR A 13 80.33 -157.04 REMARK 500 1 THR A 33 32.54 -141.87 REMARK 500 1 ASP A 59 75.80 -113.11 REMARK 500 1 LYS A 69 159.37 63.68 REMARK 500 2 SER A 2 178.80 59.96 REMARK 500 2 SER A 5 -53.32 -154.18 REMARK 500 2 SER A 6 87.91 56.06 REMARK 500 2 GLN A 12 31.25 -143.75 REMARK 500 2 THR A 33 33.36 -143.05 REMARK 500 2 ASP A 59 76.03 -113.02 REMARK 500 2 LYS A 69 159.79 63.62 REMARK 500 2 PRO A 118 92.38 -69.78 REMARK 500 2 SER A 120 174.84 61.39 REMARK 500 3 SER A 6 -172.19 54.35 REMARK 500 3 SER A 14 174.29 59.89 REMARK 500 3 THR A 33 32.10 -142.33 REMARK 500 3 ASP A 59 75.51 -114.08 REMARK 500 3 TRP A 67 173.90 -53.47 REMARK 500 3 LYS A 69 162.85 63.74 REMARK 500 3 SER A 120 167.81 62.56 REMARK 500 4 SER A 2 90.13 -161.58 REMARK 500 4 SER A 5 89.19 -166.85 REMARK 500 4 VAL A 9 99.79 60.90 REMARK 500 4 THR A 13 -70.62 -72.79 REMARK 500 4 SER A 14 177.83 58.89 REMARK 500 4 THR A 33 35.96 -144.62 REMARK 500 4 ASP A 59 78.03 -112.26 REMARK 500 4 TRP A 67 175.60 -54.09 REMARK 500 4 LYS A 69 138.65 66.65 REMARK 500 4 SER A 119 91.66 60.55 REMARK 500 5 SER A 2 -50.89 -151.17 REMARK 500 5 THR A 13 -70.44 -90.47 REMARK 500 5 SER A 31 -167.25 -123.48 REMARK 500 5 THR A 33 28.78 -155.39 REMARK 500 5 ASP A 59 76.93 -112.63 REMARK 500 5 LYS A 69 162.28 62.96 REMARK 500 5 SER A 120 -179.11 62.55 REMARK 500 6 SER A 2 169.69 61.88 REMARK 500 6 SER A 3 -49.36 -144.58 REMARK 500 6 SER A 6 -73.46 -76.00 REMARK 500 6 VAL A 9 22.41 -154.63 REMARK 500 6 LEU A 10 95.56 58.75 REMARK 500 6 GLN A 12 173.10 -57.43 REMARK 500 6 SER A 14 113.60 64.91 REMARK 500 6 SER A 31 -167.05 -123.89 REMARK 500 6 THR A 33 28.90 -155.21 REMARK 500 6 ASP A 59 76.97 -112.81 REMARK 500 6 TRP A 67 171.11 -52.47 REMARK 500 6 LYS A 69 159.84 63.65 REMARK 500 6 ALA A 73 61.53 -117.15 REMARK 500 6 THR A 112 91.71 -69.16 REMARK 500 6 THR A 114 43.49 -100.67 REMARK 500 6 SER A 116 174.35 60.09 REMARK 500 6 PRO A 118 -176.54 -69.65 REMARK 500 6 SER A 119 -176.67 59.99 REMARK 500 7 SER A 2 -70.52 -152.63 REMARK 500 7 SER A 14 169.02 62.60 REMARK 500 7 THR A 33 35.17 -144.33 REMARK 500 7 ASP A 59 75.76 -113.14 REMARK 500 7 TRP A 67 170.92 -52.28 REMARK 500 7 LYS A 69 162.09 62.92 REMARK 500 7 GLN A 113 14.45 -143.42 REMARK 500 7 THR A 114 43.79 37.10 REMARK 500 7 SER A 116 94.63 57.62 REMARK 500 7 SER A 119 79.52 -104.20 REMARK 500 7 SER A 120 -174.16 56.42 REMARK 500 8 SER A 3 75.40 -119.71 REMARK 500 8 SER A 5 -171.04 54.19 REMARK 500 8 SER A 6 -63.35 -140.08 REMARK 500 8 THR A 13 178.03 60.37 REMARK 500 8 THR A 33 29.10 -143.54 REMARK 500 8 ASP A 59 78.17 -112.24 REMARK 500 8 TRP A 67 -174.17 -58.69 REMARK 500 8 SER A 116 -173.90 60.38 REMARK 500 8 SER A 119 132.77 -172.85 REMARK 500 9 SER A 5 91.55 56.57 REMARK 500 9 THR A 11 -63.93 -142.99 REMARK 500 9 GLN A 12 109.31 -167.16 REMARK 500 9 THR A 33 33.81 -142.82 REMARK 500 9 HIS A 63 -84.29 -60.71 REMARK 500 9 VAL A 64 -71.35 -154.45 REMARK 500 9 TRP A 67 -175.18 -61.28 REMARK 500 9 LYS A 69 161.38 63.78 REMARK 500 10 SER A 3 129.99 -172.67 REMARK 500 10 THR A 33 33.54 -143.16 REMARK 500 10 ASP A 59 79.86 -111.64 REMARK 500 10 HIS A 63 -84.04 -60.33 REMARK 500 10 VAL A 64 -71.20 -154.53 REMARK 500 10 TRP A 67 -175.21 -60.55 REMARK 500 10 LYS A 69 158.73 64.07 REMARK 500 11 SER A 3 138.97 -174.65 REMARK 500 11 THR A 13 -60.28 -144.69 REMARK 500 11 THR A 33 35.56 -144.67 REMARK 500 11 HIS A 63 -84.14 -61.00 REMARK 500 11 VAL A 64 -71.25 -154.18 REMARK 500 11 TRP A 67 -175.16 -60.49 REMARK 500 11 LYS A 69 158.56 64.05 REMARK 500 11 LEU A 104 171.47 -55.84 REMARK 500 12 SER A 3 -172.99 62.73 REMARK 500 12 SER A 5 101.97 62.90 REMARK 500 12 PRO A 8 97.97 -69.78 REMARK 500 12 GLN A 12 -58.93 -129.13 REMARK 500 12 ASP A 59 76.28 -113.03 REMARK 500 12 TRP A 67 175.21 -54.11 REMARK 500 12 LYS A 69 137.82 66.55 REMARK 500 12 ALA A 73 67.18 -118.55 REMARK 500 12 SER A 119 80.71 53.74 REMARK 500 13 SER A 3 -75.89 69.17 REMARK 500 13 SER A 5 -172.71 59.62 REMARK 500 13 SER A 6 124.80 -174.96 REMARK 500 13 PRO A 8 95.03 -69.83 REMARK 500 13 LEU A 10 52.08 -117.70 REMARK 500 13 SER A 14 149.77 -170.48 REMARK 500 13 THR A 33 31.78 -143.65 REMARK 500 13 HIS A 63 -84.16 -60.71 REMARK 500 13 VAL A 64 -71.14 -154.17 REMARK 500 13 TRP A 67 -175.39 -61.18 REMARK 500 13 LYS A 69 156.02 64.66 REMARK 500 13 SER A 116 98.06 60.72 REMARK 500 14 SER A 31 -168.24 -129.05 REMARK 500 14 THR A 33 33.14 -154.69 REMARK 500 14 GLU A 44 74.18 -166.85 REMARK 500 14 ASP A 59 77.46 -112.54 REMARK 500 14 TRP A 67 173.64 -54.09 REMARK 500 14 LYS A 69 154.42 64.72 REMARK 500 14 ASP A 107 107.35 -52.33 REMARK 500 14 GLN A 113 33.94 -151.24 REMARK 500 14 PRO A 118 -171.01 -69.71 REMARK 500 14 SER A 120 88.33 57.87 REMARK 500 15 SER A 3 -48.44 -153.84 REMARK 500 15 SER A 5 -57.00 -164.91 REMARK 500 15 SER A 6 -176.97 59.15 REMARK 500 15 LEU A 10 171.62 62.17 REMARK 500 15 SER A 14 164.22 62.79 REMARK 500 15 THR A 33 39.05 -151.00 REMARK 500 15 ASP A 59 77.11 -112.78 REMARK 500 15 TRP A 67 176.80 -55.64 REMARK 500 15 LYS A 69 157.57 64.19 REMARK 500 15 LEU A 83 -169.85 -105.07 REMARK 500 15 ASP A 107 106.33 -51.88 REMARK 500 15 SER A 116 51.90 -166.83 REMARK 500 16 SER A 3 108.49 -57.12 REMARK 500 16 THR A 13 -58.12 -159.90 REMARK 500 16 SER A 31 -168.20 -129.86 REMARK 500 16 THR A 33 37.54 -148.87 REMARK 500 16 GLU A 44 72.18 -175.79 REMARK 500 16 ASP A 59 77.50 -112.54 REMARK 500 16 TRP A 67 170.88 -52.45 REMARK 500 16 LYS A 69 156.30 64.41 REMARK 500 16 ASP A 107 109.12 -51.91 REMARK 500 16 GLN A 113 30.17 -150.35 REMARK 500 16 SER A 116 49.64 -154.84 REMARK 500 17 SER A 2 -70.49 -115.08 REMARK 500 17 SER A 3 -176.15 59.33 REMARK 500 17 SER A 5 137.42 -175.60 REMARK 500 17 SER A 6 -179.30 60.96 REMARK 500 17 PRO A 8 85.06 -69.78 REMARK 500 17 THR A 13 -58.49 -159.53 REMARK 500 17 SER A 31 -168.32 -127.98 REMARK 500 17 THR A 33 22.24 -141.41 REMARK 500 17 ASP A 59 76.36 -112.96 REMARK 500 17 TRP A 67 171.84 -53.06 REMARK 500 17 LYS A 69 158.54 64.09 REMARK 500 18 SER A 2 83.06 56.26 REMARK 500 18 SER A 5 -172.10 56.61 REMARK 500 18 SER A 6 -178.67 57.12 REMARK 500 18 PRO A 8 85.21 -69.69 REMARK 500 18 SER A 14 165.41 62.68 REMARK 500 18 SER A 31 -167.24 -123.55 REMARK 500 18 THR A 33 29.79 -151.68 REMARK 500 18 HIS A 63 -84.35 -60.99 REMARK 500 18 VAL A 64 -70.88 -154.16 REMARK 500 18 TRP A 67 -175.13 -60.76 REMARK 500 18 LYS A 69 158.34 64.13 REMARK 500 18 ASP A 107 107.60 -53.20 REMARK 500 18 THR A 112 91.22 -65.13 REMARK 500 18 PRO A 118 80.60 -69.81 REMARK 500 18 SER A 120 -62.42 -156.95 REMARK 500 19 SER A 3 -179.83 60.22 REMARK 500 19 LEU A 10 95.27 61.66 REMARK 500 19 GLN A 12 -172.27 55.49 REMARK 500 19 PRO A 22 -178.20 -69.76 REMARK 500 19 SER A 31 -165.18 -124.66 REMARK 500 19 THR A 33 29.61 -156.52 REMARK 500 19 ASP A 59 76.47 -112.89 REMARK 500 19 TRP A 67 178.50 -55.88 REMARK 500 19 LYS A 69 156.10 64.10 REMARK 500 19 GLN A 113 81.47 -157.68 REMARK 500 20 PRO A 8 -175.32 -69.88 REMARK 500 20 LEU A 10 142.83 -178.61 REMARK 500 20 GLN A 12 51.69 -176.54 REMARK 500 20 THR A 13 -73.59 -83.65 REMARK 500 20 SER A 14 167.92 61.55 REMARK 500 20 THR A 33 38.65 -151.94 REMARK 500 20 ASP A 59 77.00 -112.55 REMARK 500 20 LYS A 69 159.46 63.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001101.2 RELATED DB: TARGETDB DBREF 2DLH A 8 115 UNP P23468 PTPRD_HUMAN 405 514 SEQADV 2DLH GLY A 1 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 2 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 3 UNP P23468 CLONING ARTIFACT SEQADV 2DLH GLY A 4 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 5 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 6 UNP P23468 CLONING ARTIFACT SEQADV 2DLH GLY A 7 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 116 UNP P23468 CLONING ARTIFACT SEQADV 2DLH GLY A 117 UNP P23468 CLONING ARTIFACT SEQADV 2DLH PRO A 118 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 119 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 120 UNP P23468 CLONING ARTIFACT SEQADV 2DLH GLY A 121 UNP P23468 CLONING ARTIFACT SEQRES 1 A 121 GLY SER SER GLY SER SER GLY PRO VAL LEU THR GLN THR SEQRES 2 A 121 SER GLU GLN ALA PRO SER SER ALA PRO ARG ASP VAL GLN SEQRES 3 A 121 ALA ARG MET LEU SER SER THR THR ILE LEU VAL GLN TRP SEQRES 4 A 121 LYS GLU PRO GLU GLU PRO ASN GLY GLN ILE GLN GLY TYR SEQRES 5 A 121 ARG VAL TYR TYR THR MET ASP PRO THR GLN HIS VAL ASN SEQRES 6 A 121 ASN TRP MET LYS HIS ASN VAL ALA ASP SER GLN ILE THR SEQRES 7 A 121 THR ILE GLY ASN LEU VAL PRO GLN LYS THR TYR SER VAL SEQRES 8 A 121 LYS VAL LEU ALA PHE THR SER ILE GLY ASP GLY PRO LEU SEQRES 9 A 121 SER SER ASP ILE GLN VAL ILE THR GLN THR GLY SER GLY SEQRES 10 A 121 PRO SER SER GLY SHEET 1 A 3 ARG A 23 ALA A 27 0 SHEET 2 A 3 VAL A 37 LYS A 40 -1 O LYS A 40 N ARG A 23 SHEET 3 A 3 ILE A 77 THR A 78 -1 O THR A 78 N VAL A 37 SHEET 1 B 3 ILE A 49 TYR A 55 0 SHEET 2 B 3 THR A 88 THR A 97 -1 O LYS A 92 N TYR A 55 SHEET 3 B 3 ILE A 108 ILE A 111 -1 O VAL A 110 N TYR A 89 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 273 0 0 0 6 0 0 6 0 0 0 10 END