HEADER ISOMERASE 30-MAR-06 2DJ1 TITLE THE SOLUTION STRUCTURE OF THE FIRST THIOREDOXIN DOMAIN OF TITLE 2 MOUSE PROTEIN DISULFIDE-ISOMERASE A4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISULFIDE-ISOMERASE A4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 1ST THIOREDOXIN DOMAIN; COMPND 5 SYNONYM: PROTEIN ERP-72, ERP72; COMPND 6 EC: 5.3.4.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PDIA4, CAI, ERP72; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050509-10; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PROTEIN ERP-72, ERP72, CAI, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2DJ1 1 VERSN REVDAT 1 30-SEP-06 2DJ1 0 JRNL AUTH N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE FIRST THIOREDOXIN JRNL TITL 2 DOMAIN OF MOUSE PROTEIN DISULFIDE-ISOMERASE A4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DJ1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025470. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM THIOREDOXIN DOMAIN U- REMARK 210 15N,13C; 20MM D-TRIS HCL; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 11 89.82 -59.67 REMARK 500 1 ASP A 24 -19.69 -47.35 REMARK 500 1 PHE A 27 -70.76 -58.56 REMARK 500 1 ASP A 33 51.89 -112.98 REMARK 500 1 ASP A 88 44.99 38.08 REMARK 500 1 VAL A 89 87.54 -69.38 REMARK 500 1 LYS A 100 26.89 43.80 REMARK 500 1 ARG A 110 80.96 -68.33 REMARK 500 1 PRO A 131 -168.65 -69.76 REMARK 500 1 PRO A 137 93.14 -69.73 REMARK 500 1 SER A 138 42.37 36.62 REMARK 500 1 SER A 139 99.88 -50.46 REMARK 500 2 ASP A 8 43.38 37.86 REMARK 500 2 ASN A 66 156.44 -41.99 REMARK 500 2 PRO A 69 96.68 -69.82 REMARK 500 2 ASP A 88 46.16 39.13 REMARK 500 2 ARG A 110 82.88 -67.45 REMARK 500 2 SER A 123 -38.21 -39.56 REMARK 500 2 PRO A 131 95.38 -69.76 REMARK 500 3 ASP A 8 111.89 -172.88 REMARK 500 3 LEU A 11 99.17 -69.29 REMARK 500 3 PHE A 27 -72.84 -72.27 REMARK 500 3 TYR A 106 -60.46 -95.43 REMARK 500 3 ASP A 107 50.81 35.41 REMARK 500 3 PRO A 131 -171.58 -69.80 REMARK 500 3 PRO A 137 2.83 -69.70 REMARK 500 4 ASP A 9 47.90 39.43 REMARK 500 4 ASP A 10 -68.53 -103.98 REMARK 500 4 LYS A 14 -175.09 -68.30 REMARK 500 4 ASP A 88 44.48 37.33 REMARK 500 4 VAL A 89 97.63 -69.41 REMARK 500 4 LYS A 100 27.84 47.27 REMARK 500 4 PRO A 131 -178.58 -69.74 REMARK 500 5 ASN A 17 41.64 74.21 REMARK 500 5 CYS A 49 -27.02 -38.96 REMARK 500 5 ASP A 65 31.37 -88.19 REMARK 500 5 PRO A 69 96.95 -69.72 REMARK 500 5 ASP A 88 48.09 39.11 REMARK 500 5 LYS A 100 26.91 48.93 REMARK 500 5 ASP A 107 48.43 -97.55 REMARK 500 5 PRO A 131 0.89 -69.72 REMARK 500 6 ASP A 88 42.53 39.69 REMARK 500 6 VAL A 89 98.48 -65.24 REMARK 500 6 ARG A 110 95.22 -49.03 REMARK 500 6 PRO A 131 81.74 -69.70 REMARK 500 6 SER A 138 148.90 -35.21 REMARK 500 6 SER A 139 97.28 -60.70 REMARK 500 7 SER A 5 145.23 -171.51 REMARK 500 7 ASP A 10 -52.16 -124.69 REMARK 500 7 ASP A 24 -19.66 -47.89 REMARK 500 7 ASP A 33 49.68 -107.02 REMARK 500 7 ASP A 88 47.62 35.77 REMARK 500 7 GLN A 112 -33.23 -39.63 REMARK 500 7 TRP A 127 155.06 -47.94 REMARK 500 7 PRO A 131 -172.37 -69.70 REMARK 500 7 SER A 135 126.44 -37.43 REMARK 500 8 SER A 2 154.26 -46.70 REMARK 500 8 SER A 3 133.08 -170.10 REMARK 500 8 ASP A 33 49.36 -100.84 REMARK 500 8 ASP A 65 30.82 -93.32 REMARK 500 8 PRO A 69 97.29 -69.77 REMARK 500 8 ASP A 88 48.43 39.56 REMARK 500 8 LYS A 100 25.04 45.65 REMARK 500 8 TRP A 127 153.52 -45.94 REMARK 500 8 PRO A 131 0.47 -69.76 REMARK 500 8 THR A 134 41.13 -88.74 REMARK 500 8 SER A 139 54.27 34.61 REMARK 500 9 ASP A 33 51.70 -108.13 REMARK 500 9 ASP A 88 44.06 39.09 REMARK 500 9 VAL A 89 97.86 -66.99 REMARK 500 9 LYS A 100 25.82 44.47 REMARK 500 9 ARG A 110 97.66 -49.16 REMARK 500 9 PRO A 131 -178.07 -69.76 REMARK 500 9 PRO A 137 93.61 -69.77 REMARK 500 10 ASP A 9 43.77 -80.66 REMARK 500 10 ASN A 66 152.26 -36.15 REMARK 500 10 ASP A 88 44.48 34.38 REMARK 500 10 VAL A 89 93.44 -63.47 REMARK 500 10 LYS A 100 24.98 47.97 REMARK 500 10 PRO A 131 -175.84 -69.72 REMARK 500 10 SER A 138 115.48 -173.08 REMARK 500 11 ASP A 9 47.73 -100.26 REMARK 500 11 LEU A 11 31.43 -85.87 REMARK 500 11 ASP A 33 45.10 -109.35 REMARK 500 11 PRO A 69 90.46 -69.74 REMARK 500 11 ASP A 88 45.96 34.43 REMARK 500 11 VAL A 89 97.48 -66.26 REMARK 500 11 LYS A 100 25.01 47.40 REMARK 500 11 ARG A 110 40.76 35.97 REMARK 500 11 SER A 123 -33.90 -36.30 REMARK 500 11 PRO A 131 -173.62 -69.74 REMARK 500 11 THR A 134 136.87 -34.13 REMARK 500 11 SER A 139 100.53 -49.59 REMARK 500 12 ASP A 24 -19.71 -47.22 REMARK 500 12 ASN A 66 152.60 -39.74 REMARK 500 12 ASP A 88 40.97 38.31 REMARK 500 12 LYS A 100 24.98 49.50 REMARK 500 12 PRO A 131 3.03 -69.78 REMARK 500 12 SER A 135 148.05 -36.71 REMARK 500 12 PRO A 137 83.67 -69.74 REMARK 500 13 ASP A 10 -60.71 -125.46 REMARK 500 13 ASP A 33 38.82 -98.61 REMARK 500 13 ASN A 66 141.25 -37.19 REMARK 500 13 ASP A 88 51.60 39.36 REMARK 500 13 LYS A 100 25.71 48.45 REMARK 500 13 ASP A 107 64.41 -107.38 REMARK 500 13 ARG A 110 50.11 36.70 REMARK 500 13 PRO A 131 0.42 -69.80 REMARK 500 14 ASP A 9 42.60 -88.04 REMARK 500 14 ASP A 10 -68.54 -133.72 REMARK 500 14 LEU A 11 86.61 -61.74 REMARK 500 14 PHE A 27 -71.40 -69.97 REMARK 500 14 ASP A 88 37.44 36.49 REMARK 500 14 VAL A 89 87.73 -58.38 REMARK 500 14 LYS A 100 25.97 48.95 REMARK 500 14 ARG A 110 55.02 34.61 REMARK 500 14 PRO A 137 3.79 -69.80 REMARK 500 15 SER A 2 -58.64 -122.47 REMARK 500 15 ASP A 10 -62.50 -129.16 REMARK 500 15 LEU A 11 82.10 -63.20 REMARK 500 15 ASP A 33 50.86 -114.43 REMARK 500 15 ASP A 88 46.45 35.47 REMARK 500 15 TRP A 127 159.81 -46.53 REMARK 500 16 ASP A 9 48.05 -97.38 REMARK 500 16 ASP A 10 -63.34 -101.70 REMARK 500 16 ASN A 66 156.55 -40.34 REMARK 500 16 PRO A 69 98.69 -69.71 REMARK 500 16 ALA A 77 -37.25 -39.66 REMARK 500 16 ASP A 88 45.93 39.40 REMARK 500 16 TRP A 127 154.99 -46.42 REMARK 500 16 PRO A 131 1.81 -69.77 REMARK 500 16 GLU A 132 78.18 -64.41 REMARK 500 16 SER A 135 132.34 -37.03 REMARK 500 17 SER A 3 -49.65 -134.05 REMARK 500 17 SER A 5 87.59 -68.54 REMARK 500 17 ASP A 8 133.70 -170.91 REMARK 500 17 LEU A 11 86.74 -61.13 REMARK 500 17 ASN A 17 31.42 34.75 REMARK 500 17 ASP A 33 42.61 -108.68 REMARK 500 17 ASN A 66 152.03 -38.21 REMARK 500 17 ASP A 88 40.93 38.82 REMARK 500 17 LYS A 100 29.23 47.90 REMARK 500 17 ARG A 110 43.51 37.63 REMARK 500 17 GLU A 132 86.30 -61.97 REMARK 500 18 ASP A 9 43.70 -90.12 REMARK 500 18 ASN A 66 150.18 -34.55 REMARK 500 18 PHE A 87 30.19 -95.56 REMARK 500 18 ASP A 88 42.84 34.54 REMARK 500 18 VAL A 89 95.45 -62.62 REMARK 500 18 LYS A 100 25.04 45.44 REMARK 500 18 ARG A 110 78.53 -68.66 REMARK 500 18 PRO A 131 91.07 -69.76 REMARK 500 18 VAL A 133 54.12 32.84 REMARK 500 18 PRO A 137 2.44 -69.75 REMARK 500 19 ASP A 10 -48.60 -134.26 REMARK 500 19 ASN A 66 150.52 -38.61 REMARK 500 19 ASP A 88 44.77 34.50 REMARK 500 19 VAL A 89 95.64 -62.19 REMARK 500 19 LYS A 100 25.01 45.67 REMARK 500 19 TRP A 127 150.10 -48.71 REMARK 500 19 PRO A 131 13.35 -69.77 REMARK 500 19 GLU A 132 68.60 -69.67 REMARK 500 19 VAL A 133 55.05 30.61 REMARK 500 19 SER A 135 140.51 -170.26 REMARK 500 19 SER A 138 153.57 -44.61 REMARK 500 19 SER A 139 47.81 -81.98 REMARK 500 20 ASP A 10 -75.18 -123.82 REMARK 500 20 LEU A 11 55.00 26.36 REMARK 500 20 ASP A 33 45.51 -105.41 REMARK 500 20 ASP A 65 32.59 -88.04 REMARK 500 20 PRO A 69 97.42 -69.76 REMARK 500 20 PHE A 87 30.96 -94.10 REMARK 500 20 ASP A 88 41.93 35.17 REMARK 500 20 VAL A 89 95.23 -63.68 REMARK 500 20 LYS A 100 27.83 47.60 REMARK 500 20 SER A 123 -34.86 -39.75 REMARK 500 20 PRO A 131 1.20 -69.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008000334.2 RELATED DB: TARGETDB DBREF 2DJ1 A 8 134 UNP P08003 PDIA4_MOUSE 46 172 SEQADV 2DJ1 GLY A 1 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 SER A 2 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 SER A 3 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 GLY A 4 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 SER A 5 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 SER A 6 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 GLY A 7 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 SER A 135 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 GLY A 136 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 PRO A 137 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 SER A 138 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 SER A 139 UNP P08003 CLONING ARTIFACT SEQADV 2DJ1 GLY A 140 UNP P08003 CLONING ARTIFACT SEQRES 1 A 140 GLY SER SER GLY SER SER GLY ASP ASP ASP LEU GLU VAL SEQRES 2 A 140 LYS GLU GLU ASN GLY VAL TRP VAL LEU ASN ASP GLY ASN SEQRES 3 A 140 PHE ASP ASN PHE VAL ALA ASP LYS ASP THR VAL LEU LEU SEQRES 4 A 140 GLU PHE TYR ALA PRO TRP CYS GLY HIS CYS LYS GLN PHE SEQRES 5 A 140 ALA PRO GLU TYR GLU LYS ILE ALA SER THR LEU LYS ASP SEQRES 6 A 140 ASN ASP PRO PRO ILE ALA VAL ALA LYS ILE ASP ALA THR SEQRES 7 A 140 SER ALA SER MET LEU ALA SER LYS PHE ASP VAL SER GLY SEQRES 8 A 140 TYR PRO THR ILE LYS ILE LEU LYS LYS GLY GLN ALA VAL SEQRES 9 A 140 ASP TYR ASP GLY SER ARG THR GLN GLU GLU ILE VAL ALA SEQRES 10 A 140 LYS VAL ARG GLU VAL SER GLN PRO ASP TRP THR PRO PRO SEQRES 11 A 140 PRO GLU VAL THR SER GLY PRO SER SER GLY HELIX 1 1 ASN A 26 ALA A 32 1 7 HELIX 2 2 CYS A 46 GLN A 51 1 6 HELIX 3 3 PHE A 52 ASP A 65 1 14 HELIX 4 4 ALA A 80 PHE A 87 1 8 HELIX 5 5 THR A 111 GLN A 124 1 14 SHEET 1 A 6 LYS A 14 GLU A 16 0 SHEET 2 A 6 VAL A 19 VAL A 21 -1 O VAL A 21 N LYS A 14 SHEET 3 A 6 ALA A 71 ILE A 75 1 O LYS A 74 N TRP A 20 SHEET 4 A 6 THR A 36 PHE A 41 1 N GLU A 40 O ILE A 75 SHEET 5 A 6 THR A 94 LYS A 99 -1 O THR A 94 N PHE A 41 SHEET 6 A 6 GLN A 102 ASP A 105 -1 O VAL A 104 N ILE A 97 CISPEP 1 ASP A 67 PRO A 68 1 -0.04 CISPEP 2 TYR A 92 PRO A 93 1 -0.09 CISPEP 3 ASP A 67 PRO A 68 2 0.05 CISPEP 4 TYR A 92 PRO A 93 2 -0.09 CISPEP 5 ASP A 67 PRO A 68 3 0.07 CISPEP 6 TYR A 92 PRO A 93 3 -0.13 CISPEP 7 ASP A 67 PRO A 68 4 0.07 CISPEP 8 TYR A 92 PRO A 93 4 0.00 CISPEP 9 ASP A 67 PRO A 68 5 0.03 CISPEP 10 TYR A 92 PRO A 93 5 -0.09 CISPEP 11 ASP A 67 PRO A 68 6 0.01 CISPEP 12 TYR A 92 PRO A 93 6 -0.03 CISPEP 13 ASP A 67 PRO A 68 7 -0.01 CISPEP 14 TYR A 92 PRO A 93 7 -0.05 CISPEP 15 ASP A 67 PRO A 68 8 0.00 CISPEP 16 TYR A 92 PRO A 93 8 -0.11 CISPEP 17 ASP A 67 PRO A 68 9 -0.02 CISPEP 18 TYR A 92 PRO A 93 9 0.03 CISPEP 19 ASP A 67 PRO A 68 10 0.05 CISPEP 20 TYR A 92 PRO A 93 10 -0.02 CISPEP 21 ASP A 67 PRO A 68 11 0.03 CISPEP 22 TYR A 92 PRO A 93 11 -0.16 CISPEP 23 ASP A 67 PRO A 68 12 0.10 CISPEP 24 TYR A 92 PRO A 93 12 -0.02 CISPEP 25 ASP A 67 PRO A 68 13 -0.04 CISPEP 26 TYR A 92 PRO A 93 13 -0.07 CISPEP 27 ASP A 67 PRO A 68 14 -0.03 CISPEP 28 TYR A 92 PRO A 93 14 0.00 CISPEP 29 ASP A 67 PRO A 68 15 -0.04 CISPEP 30 TYR A 92 PRO A 93 15 -0.06 CISPEP 31 ASP A 67 PRO A 68 16 0.02 CISPEP 32 TYR A 92 PRO A 93 16 -0.07 CISPEP 33 ASP A 67 PRO A 68 17 0.02 CISPEP 34 TYR A 92 PRO A 93 17 -0.04 CISPEP 35 ASP A 67 PRO A 68 18 -0.01 CISPEP 36 TYR A 92 PRO A 93 18 -0.02 CISPEP 37 ASP A 67 PRO A 68 19 0.04 CISPEP 38 TYR A 92 PRO A 93 19 -0.08 CISPEP 39 ASP A 67 PRO A 68 20 0.00 CISPEP 40 TYR A 92 PRO A 93 20 -0.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 250 0 0 5 6 0 0 6 0 0 0 11 END