HEADER HYDROLASE 28-MAR-06 2DI4 TITLE CRYSTAL STRUCTURE OF THE FTSH PROTEASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN FTSH HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 403-634; COMPND 5 SYNONYM: ZINC PROTEASE; COMPND 6 EC: 3.4.24.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS METALLOPROTEINASE, HEXAMER-RING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SUNO,H.NIWA,D.TSUCHIYA,X.ZHANG,M.YOSHIDA,K.MORIKAWA REVDAT 3 13-JUL-11 2DI4 1 VERSN REVDAT 2 24-FEB-09 2DI4 1 VERSN REVDAT 1 27-JUN-06 2DI4 0 JRNL AUTH R.SUNO,H.NIWA,D.TSUCHIYA,X.ZHANG,M.YOSHIDA,K.MORIKAWA JRNL TITL STRUCTURE OF THE WHOLE CYTOSOLIC REGION OF ATP-DEPENDENT JRNL TITL 2 PROTEASE FTSH JRNL REF MOL.CELL V. 22 575 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16762831 JRNL DOI 10.1016/J.MOLCEL.2006.04.020 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.NIWA,D.TSUCHIYA,H.MAKYIO,M.YOSHIDA,K.MORIKAWA REMARK 1 TITL HEXAMERIC RING STRUCTURE OF THE ATPASE DOMAIN OF THE REMARK 1 TITL 2 MEMBRANE-INTEGRATED METALLOPROTEASE FTSH FROM THERMUS REMARK 1 TITL 3 THERMOPHILUS HB8 REMARK 1 REF STRUCTURE V. 10 1415 2002 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 12377127 REMARK 1 DOI 10.1016/S0969-2126(02)00855-9 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 876 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 787 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.51000 REMARK 3 B22 (A**2) : -4.51000 REMARK 3 B33 (A**2) : 6.76000 REMARK 3 B12 (A**2) : -2.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.411 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.172 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2667 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3609 ; 1.360 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 345 ; 5.107 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;42.485 ;24.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;19.140 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;24.200 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1956 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1260 ; 0.246 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1832 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 74 ; 0.111 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.299 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.349 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1783 ; 0.742 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 756 ; 1.150 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 993 ; 2.025 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 853 ; 2.940 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 408 A 441 6 REMARK 3 1 B 408 B 442 6 REMARK 3 2 A 458 A 524 6 REMARK 3 2 B 459 B 524 6 REMARK 3 3 A 535 A 607 6 REMARK 3 3 B 535 B 607 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1221 ; 0.39 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1221 ; 1.37 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 408 A 441 REMARK 3 RESIDUE RANGE : A 458 A 524 REMARK 3 RESIDUE RANGE : A 535 A 607 REMARK 3 ORIGIN FOR THE GROUP (A): 71.4277 2.9950 37.8189 REMARK 3 T TENSOR REMARK 3 T11: 0.0025 T22: -0.0901 REMARK 3 T33: -0.1553 T12: 0.0190 REMARK 3 T13: -0.0169 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 4.1420 L22: 1.5427 REMARK 3 L33: 0.7689 L12: -0.8146 REMARK 3 L13: -0.5805 L23: 0.1332 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: 0.1163 S13: -0.2674 REMARK 3 S21: -0.0542 S22: -0.0606 S23: -0.1450 REMARK 3 S31: 0.1166 S32: -0.0342 S33: 0.0348 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 408 B 442 REMARK 3 RESIDUE RANGE : B 459 B 524 REMARK 3 RESIDUE RANGE : B 535 B 607 REMARK 3 ORIGIN FOR THE GROUP (A): 38.3721 6.8800 37.5309 REMARK 3 T TENSOR REMARK 3 T11: -0.0495 T22: -0.0397 REMARK 3 T33: -0.2019 T12: -0.0347 REMARK 3 T13: -0.0184 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.0815 L22: 5.0715 REMARK 3 L33: 0.7597 L12: -0.5168 REMARK 3 L13: -0.3784 L23: 0.4755 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.0019 S13: -0.1896 REMARK 3 S21: -0.0694 S22: -0.0033 S23: 0.2200 REMARK 3 S31: 0.0604 S32: -0.0766 S33: 0.0290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB025440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000, 1.05000, 1.00524, REMARK 200 1.00714 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES (PH 6.0), 5% PEG8K, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.75000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.75000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y+1, X-Y, Z AND - REMARK 300 X+Y+1, -X+1, Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -225.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 116.80000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 58.40000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 101.15177 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 397 REMARK 465 GLN A 398 REMARK 465 GLY A 399 REMARK 465 PRO A 400 REMARK 465 LEU A 401 REMARK 465 GLY A 402 REMARK 465 SER A 403 REMARK 465 HIS A 404 REMARK 465 MET A 405 REMARK 465 PRO A 442 REMARK 465 ARG A 443 REMARK 465 GLY A 444 REMARK 465 MET A 445 REMARK 465 ALA A 446 REMARK 465 LEU A 447 REMARK 465 GLY A 448 REMARK 465 VAL A 449 REMARK 465 THR A 450 REMARK 465 GLN A 451 REMARK 465 GLN A 452 REMARK 465 LEU A 453 REMARK 465 PRO A 454 REMARK 465 ILE A 455 REMARK 465 GLU A 456 REMARK 465 ASP A 457 REMARK 465 VAL A 525 REMARK 465 ALA A 526 REMARK 465 ASN A 527 REMARK 465 PRO A 528 REMARK 465 PHE A 529 REMARK 465 LEU A 530 REMARK 465 GLY A 531 REMARK 465 GLY A 532 REMARK 465 MET A 533 REMARK 465 THR A 534 REMARK 465 LYS A 608 REMARK 465 GLU A 609 REMARK 465 GLU A 610 REMARK 465 LEU A 611 REMARK 465 PHE A 612 REMARK 465 ASP A 613 REMARK 465 LYS A 614 REMARK 465 ASP A 615 REMARK 465 ARG A 616 REMARK 465 LYS A 617 REMARK 465 SER A 618 REMARK 465 GLU A 619 REMARK 465 GLU A 620 REMARK 465 ASN A 621 REMARK 465 LYS A 622 REMARK 465 GLU A 623 REMARK 465 LEU A 624 REMARK 465 LYS A 625 REMARK 465 SER A 626 REMARK 465 GLU A 627 REMARK 465 GLU A 628 REMARK 465 VAL A 629 REMARK 465 LYS A 630 REMARK 465 GLU A 631 REMARK 465 GLU A 632 REMARK 465 VAL A 633 REMARK 465 VAL A 634 REMARK 465 PHE B 397 REMARK 465 GLN B 398 REMARK 465 GLY B 399 REMARK 465 PRO B 400 REMARK 465 LEU B 401 REMARK 465 GLY B 402 REMARK 465 SER B 403 REMARK 465 HIS B 404 REMARK 465 MET B 405 REMARK 465 THR B 406 REMARK 465 ARG B 443 REMARK 465 GLY B 444 REMARK 465 MET B 445 REMARK 465 ALA B 446 REMARK 465 LEU B 447 REMARK 465 GLY B 448 REMARK 465 VAL B 449 REMARK 465 THR B 450 REMARK 465 GLN B 451 REMARK 465 GLN B 452 REMARK 465 LEU B 453 REMARK 465 PRO B 454 REMARK 465 ILE B 455 REMARK 465 GLU B 456 REMARK 465 ASP B 457 REMARK 465 LYS B 458 REMARK 465 VAL B 525 REMARK 465 ALA B 526 REMARK 465 ASN B 527 REMARK 465 PRO B 528 REMARK 465 PHE B 529 REMARK 465 LEU B 530 REMARK 465 GLY B 531 REMARK 465 GLY B 532 REMARK 465 MET B 533 REMARK 465 THR B 534 REMARK 465 LYS B 608 REMARK 465 GLU B 609 REMARK 465 GLU B 610 REMARK 465 LEU B 611 REMARK 465 PHE B 612 REMARK 465 ASP B 613 REMARK 465 LYS B 614 REMARK 465 ASP B 615 REMARK 465 ARG B 616 REMARK 465 LYS B 617 REMARK 465 SER B 618 REMARK 465 GLU B 619 REMARK 465 GLU B 620 REMARK 465 ASN B 621 REMARK 465 LYS B 622 REMARK 465 GLU B 623 REMARK 465 LEU B 624 REMARK 465 LYS B 625 REMARK 465 SER B 626 REMARK 465 GLU B 627 REMARK 465 GLU B 628 REMARK 465 VAL B 629 REMARK 465 LYS B 630 REMARK 465 GLU B 631 REMARK 465 GLU B 632 REMARK 465 VAL B 633 REMARK 465 VAL B 634 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 406 OG1 CG2 REMARK 470 ILE A 407 CG1 CG2 CD1 REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 LYS A 434 CG CD CE NZ REMARK 470 VAL A 435 CG1 CG2 REMARK 470 LYS A 437 CG CD CE NZ REMARK 470 ILE A 441 CG1 CG2 CD1 REMARK 470 LYS A 458 CG CD CE NZ REMARK 470 ILE A 460 CG1 CG2 CD1 REMARK 470 ARG A 524 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 538 CG OD1 OD2 REMARK 470 GLU A 557 CG CD OE1 OE2 REMARK 470 GLU A 571 CG CD OE1 OE2 REMARK 470 LYS A 578 CG CD CE NZ REMARK 470 LYS A 579 CG CD CE NZ REMARK 470 LYS A 583 CG CD CE NZ REMARK 470 GLU A 584 CG CD OE1 OE2 REMARK 470 LYS A 596 CG CD CE NZ REMARK 470 ILE A 600 CG1 CG2 CD1 REMARK 470 GLU A 601 CG CD OE1 OE2 REMARK 470 LYS A 603 CG CD CE NZ REMARK 470 LYS A 605 CG CD CE NZ REMARK 470 LYS A 607 CG CD CE NZ REMARK 470 ILE B 407 CG1 CG2 CD1 REMARK 470 LYS B 410 CG CD CE NZ REMARK 470 ASP B 430 CG OD1 OD2 REMARK 470 ASP B 431 CG OD1 OD2 REMARK 470 ASP B 433 CG OD1 OD2 REMARK 470 LYS B 434 CG CD CE NZ REMARK 470 VAL B 435 CG1 CG2 REMARK 470 LYS B 437 CG CD CE NZ REMARK 470 LYS B 516 CG CD CE NZ REMARK 470 ARG B 524 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 537 CG1 CG2 REMARK 470 ASP B 538 CG OD1 OD2 REMARK 470 GLU B 568 CG CD OE1 OE2 REMARK 470 GLU B 571 CG CD OE1 OE2 REMARK 470 LYS B 578 CG CD CE NZ REMARK 470 LYS B 579 CG CD CE NZ REMARK 470 GLU B 590 CG CD OE1 OE2 REMARK 470 LYS B 596 CG CD CE NZ REMARK 470 ILE B 600 CG1 CG2 CD1 REMARK 470 GLU B 601 CG CD OE1 OE2 REMARK 470 LYS B 603 CG CD CE NZ REMARK 470 LYS B 605 CG CD CE NZ REMARK 470 LYS B 607 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 437 CA - C - N ANGL. DEV. = 17.4 DEGREES REMARK 500 LYS B 437 O - C - N ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 407 112.93 -169.71 REMARK 500 PRO A 409 -33.66 -31.62 REMARK 500 SER A 429 109.99 -54.25 REMARK 500 ASP A 430 2.35 -63.49 REMARK 500 ASP A 431 -67.71 -145.74 REMARK 500 LYS A 437 94.19 -165.81 REMARK 500 HIS A 459 -159.35 -145.15 REMARK 500 PRO A 519 34.19 -69.73 REMARK 500 ARG A 523 90.88 -61.57 REMARK 500 GLU A 584 -28.35 68.05 REMARK 500 LYS A 605 90.70 152.17 REMARK 500 CYS A 606 -71.26 -144.10 REMARK 500 ASP B 431 -61.46 -134.18 REMARK 500 ASP B 432 96.05 -20.35 REMARK 500 LYS B 434 141.88 176.25 REMARK 500 HIS B 436 -145.48 -143.23 REMARK 500 LYS B 437 167.54 130.19 REMARK 500 ILE B 441 -79.91 -80.24 REMARK 500 ARG B 523 -81.57 -55.71 REMARK 500 GLU B 584 -28.40 70.86 REMARK 500 CYS B 606 -56.34 -127.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS B 437 -14.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A1001 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 422 NE2 REMARK 620 2 ASP A 496 OD1 92.0 REMARK 620 3 ASP A 496 OD2 80.7 44.8 REMARK 620 4 HIS A 418 NE2 86.5 135.3 91.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B2001 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 496 OD1 REMARK 620 2 HIS B 418 NE2 137.2 REMARK 620 3 ASP B 496 OD2 41.9 98.7 REMARK 620 4 HIS B 422 NE2 84.3 91.1 101.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 2001 DBREF 2DI4 A 405 634 UNP O67077 FTSH_AQUAE 405 634 DBREF 2DI4 B 405 634 UNP O67077 FTSH_AQUAE 405 634 SEQADV 2DI4 PHE A 397 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLN A 398 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLY A 399 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 PRO A 400 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 LEU A 401 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLY A 402 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 SER A 403 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 HIS A 404 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 PHE B 397 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLN B 398 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLY B 399 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 PRO B 400 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 LEU B 401 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLY B 402 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 SER B 403 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 HIS B 404 UNP O67077 CLONING ARTIFACT SEQRES 1 A 238 PHE GLN GLY PRO LEU GLY SER HIS MET THR ILE SER PRO SEQRES 2 A 238 LYS GLU LYS GLU LYS ILE ALA ILE HIS GLU ALA GLY HIS SEQRES 3 A 238 ALA LEU MET GLY LEU VAL SER ASP ASP ASP ASP LYS VAL SEQRES 4 A 238 HIS LYS ILE SER ILE ILE PRO ARG GLY MET ALA LEU GLY SEQRES 5 A 238 VAL THR GLN GLN LEU PRO ILE GLU ASP LYS HIS ILE TYR SEQRES 6 A 238 ASP LYS LYS ASP LEU TYR ASN LYS ILE LEU VAL LEU LEU SEQRES 7 A 238 GLY GLY ARG ALA ALA GLU GLU VAL PHE PHE GLY LYS ASP SEQRES 8 A 238 GLY ILE THR THR GLY ALA GLU ASN ASP LEU GLN ARG ALA SEQRES 9 A 238 THR ASP LEU ALA TYR ARG MET VAL SER MET TRP GLY MET SEQRES 10 A 238 SER ASP LYS VAL GLY PRO ILE ALA ILE ARG ARG VAL ALA SEQRES 11 A 238 ASN PRO PHE LEU GLY GLY MET THR THR ALA VAL ASP THR SEQRES 12 A 238 SER PRO ASP LEU LEU ARG GLU ILE ASP GLU GLU VAL LYS SEQRES 13 A 238 ARG ILE ILE THR GLU GLN TYR GLU LYS ALA LYS ALA ILE SEQRES 14 A 238 VAL GLU GLU TYR LYS GLU PRO LEU LYS ALA VAL VAL LYS SEQRES 15 A 238 LYS LEU LEU GLU LYS GLU THR ILE THR CYS GLU GLU PHE SEQRES 16 A 238 VAL GLU VAL PHE LYS LEU TYR GLY ILE GLU LEU LYS ASP SEQRES 17 A 238 LYS CYS LYS LYS GLU GLU LEU PHE ASP LYS ASP ARG LYS SEQRES 18 A 238 SER GLU GLU ASN LYS GLU LEU LYS SER GLU GLU VAL LYS SEQRES 19 A 238 GLU GLU VAL VAL SEQRES 1 B 238 PHE GLN GLY PRO LEU GLY SER HIS MET THR ILE SER PRO SEQRES 2 B 238 LYS GLU LYS GLU LYS ILE ALA ILE HIS GLU ALA GLY HIS SEQRES 3 B 238 ALA LEU MET GLY LEU VAL SER ASP ASP ASP ASP LYS VAL SEQRES 4 B 238 HIS LYS ILE SER ILE ILE PRO ARG GLY MET ALA LEU GLY SEQRES 5 B 238 VAL THR GLN GLN LEU PRO ILE GLU ASP LYS HIS ILE TYR SEQRES 6 B 238 ASP LYS LYS ASP LEU TYR ASN LYS ILE LEU VAL LEU LEU SEQRES 7 B 238 GLY GLY ARG ALA ALA GLU GLU VAL PHE PHE GLY LYS ASP SEQRES 8 B 238 GLY ILE THR THR GLY ALA GLU ASN ASP LEU GLN ARG ALA SEQRES 9 B 238 THR ASP LEU ALA TYR ARG MET VAL SER MET TRP GLY MET SEQRES 10 B 238 SER ASP LYS VAL GLY PRO ILE ALA ILE ARG ARG VAL ALA SEQRES 11 B 238 ASN PRO PHE LEU GLY GLY MET THR THR ALA VAL ASP THR SEQRES 12 B 238 SER PRO ASP LEU LEU ARG GLU ILE ASP GLU GLU VAL LYS SEQRES 13 B 238 ARG ILE ILE THR GLU GLN TYR GLU LYS ALA LYS ALA ILE SEQRES 14 B 238 VAL GLU GLU TYR LYS GLU PRO LEU LYS ALA VAL VAL LYS SEQRES 15 B 238 LYS LEU LEU GLU LYS GLU THR ILE THR CYS GLU GLU PHE SEQRES 16 B 238 VAL GLU VAL PHE LYS LEU TYR GLY ILE GLU LEU LYS ASP SEQRES 17 B 238 LYS CYS LYS LYS GLU GLU LEU PHE ASP LYS ASP ARG LYS SEQRES 18 B 238 SER GLU GLU ASN LYS GLU LEU LYS SER GLU GLU VAL LYS SEQRES 19 B 238 GLU GLU VAL VAL HET HG A1001 1 HET HG B2001 1 HETNAM HG MERCURY (II) ION FORMUL 3 HG 2(HG 2+) FORMUL 5 HOH *15(H2 O) HELIX 1 1 SER A 408 SER A 429 1 22 HELIX 2 2 ASP A 462 ILE A 489 1 28 HELIX 3 3 THR A 490 GLY A 492 5 3 HELIX 4 4 ALA A 493 MET A 510 1 18 HELIX 5 5 SER A 540 TYR A 569 1 30 HELIX 6 6 TYR A 569 GLU A 584 1 16 HELIX 7 7 THR A 587 GLY A 599 1 13 HELIX 8 8 SER B 408 SER B 429 1 22 HELIX 9 9 ASP B 462 GLY B 485 1 24 HELIX 10 10 THR B 490 GLY B 492 5 3 HELIX 11 11 ALA B 493 MET B 510 1 18 HELIX 12 12 SER B 540 TYR B 569 1 30 HELIX 13 13 TYR B 569 GLU B 584 1 16 HELIX 14 14 THR B 587 LEU B 597 1 11 SHEET 1 A 2 ILE A 438 SER A 439 0 SHEET 2 A 2 THR A 585 ILE A 586 -1 O ILE A 586 N ILE A 438 SHEET 1 B 2 ILE B 438 SER B 439 0 SHEET 2 B 2 THR B 585 ILE B 586 -1 O ILE B 586 N ILE B 438 SSBOND 1 CYS A 588 CYS A 606 1555 1555 2.02 SSBOND 2 CYS B 588 CYS B 606 1555 1555 2.03 LINK HG HG A1001 NE2 HIS A 422 1555 1555 2.19 LINK HG HG A1001 OD1 ASP A 496 1555 1555 3.14 LINK HG HG A1001 OD2 ASP A 496 1555 1555 1.91 LINK HG HG A1001 NE2 HIS A 418 1555 1555 1.95 LINK HG HG B2001 OD1 ASP B 496 1555 1555 3.29 LINK HG HG B2001 NE2 HIS B 418 1555 1555 2.35 LINK HG HG B2001 OD2 ASP B 496 1555 1555 2.19 LINK HG HG B2001 NE2 HIS B 422 1555 1555 2.38 SITE 1 AC1 3 HIS A 418 HIS A 422 ASP A 496 SITE 1 AC2 3 HIS B 418 HIS B 422 ASP B 496 CRYST1 116.800 116.800 63.500 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008562 0.004943 0.000000 0.00000 SCALE2 0.000000 0.009886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015748 0.00000 MASTER 602 0 2 14 4 0 2 6 0 0 0 38 END