HEADER SIGNALING PROTEIN 15-DEC-05 2DBF TITLE SOLUTION STRUCTURE OF THE DEATH DOMAIN IN HUMAN NUCLEAR TITLE 2 FACTOR NF-KAPPA-B P105 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEATH DOMAIN; COMPND 5 SYNONYM: KBF1, DNA-BINDING FACTOR KBF1, EBP- 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PR1117_G03; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050613-15; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS APOPTOSIS, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SAITO,M.INOUE,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2DBF 1 VERSN REVDAT 1 19-DEC-06 2DBF 0 JRNL AUTH K.SAITO,M.INOUE,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE DEATH DOMAIN IN HUMAN JRNL TITL 2 NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DBF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025215. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 2002, REMARK 210 NMRVIEW 5, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 103.10 60.55 REMARK 500 1 SER A 5 86.23 -159.77 REMARK 500 1 LYS A 31 31.74 -163.04 REMARK 500 1 SER A 66 35.86 -98.35 REMARK 500 1 SER A 94 -178.90 -173.65 REMARK 500 2 LYS A 31 39.69 -161.08 REMARK 500 2 LEU A 42 31.23 -141.71 REMARK 500 2 LEU A 45 31.17 -97.99 REMARK 500 2 SER A 66 31.60 -98.27 REMARK 500 2 ALA A 92 -60.87 -99.34 REMARK 500 2 SER A 94 95.82 60.22 REMARK 500 2 PRO A 97 107.25 -52.16 REMARK 500 2 SER A 99 84.98 -163.64 REMARK 500 3 SER A 5 99.88 -173.45 REMARK 500 3 LYS A 31 30.78 -154.58 REMARK 500 3 LEU A 42 31.82 -148.84 REMARK 500 3 SER A 98 -65.35 -101.45 REMARK 500 4 SER A 3 154.39 61.39 REMARK 500 4 SER A 6 -178.40 58.52 REMARK 500 4 ASP A 8 58.63 -165.82 REMARK 500 4 LYS A 31 33.40 -164.98 REMARK 500 4 LEU A 40 -72.82 -60.56 REMARK 500 4 SER A 66 34.40 -97.80 REMARK 500 4 SER A 94 43.50 -165.34 REMARK 500 4 SER A 98 31.60 -144.09 REMARK 500 5 SER A 2 -47.31 -148.86 REMARK 500 5 LYS A 31 39.51 -163.37 REMARK 500 5 SER A 66 36.03 -96.50 REMARK 500 5 ALA A 92 -68.04 -99.07 REMARK 500 5 SER A 94 98.10 60.75 REMARK 500 5 SER A 99 86.23 60.54 REMARK 500 6 SER A 5 -67.96 -125.01 REMARK 500 6 ASP A 8 50.22 -109.37 REMARK 500 6 LYS A 31 41.73 -162.50 REMARK 500 6 LEU A 42 31.19 -143.26 REMARK 500 6 SER A 66 33.28 -98.32 REMARK 500 6 SER A 94 -55.30 -134.47 REMARK 500 6 SER A 95 -76.50 65.83 REMARK 500 7 SER A 2 96.73 60.59 REMARK 500 7 LYS A 31 40.05 -164.80 REMARK 500 7 SER A 66 33.11 -96.84 REMARK 500 7 SER A 94 164.86 59.71 REMARK 500 8 SER A 5 87.56 60.33 REMARK 500 8 ASP A 8 33.30 -98.55 REMARK 500 8 LYS A 31 33.26 -158.26 REMARK 500 8 LEU A 42 31.30 -146.21 REMARK 500 8 PRO A 97 96.73 -52.40 REMARK 500 9 SER A 2 119.33 62.62 REMARK 500 9 SER A 3 170.65 60.99 REMARK 500 9 SER A 5 96.17 60.77 REMARK 500 9 SER A 6 -73.12 -114.53 REMARK 500 9 LYS A 31 31.11 -155.21 REMARK 500 9 LEU A 42 31.52 -151.16 REMARK 500 9 SER A 94 -69.22 -106.28 REMARK 500 9 SER A 95 -62.41 -176.62 REMARK 500 10 SER A 2 90.34 -162.18 REMARK 500 10 SER A 6 147.93 62.67 REMARK 500 10 ASP A 8 31.58 -145.90 REMARK 500 10 LYS A 31 31.16 -155.74 REMARK 500 10 SER A 66 31.55 -98.55 REMARK 500 11 SER A 5 -174.01 60.35 REMARK 500 11 ASP A 8 57.21 -142.29 REMARK 500 11 LYS A 31 31.83 -159.36 REMARK 500 11 SER A 66 33.44 -96.80 REMARK 500 11 SER A 95 97.52 59.79 REMARK 500 11 SER A 99 80.05 -160.11 REMARK 500 12 SER A 2 174.24 60.36 REMARK 500 12 SER A 3 -46.14 -175.79 REMARK 500 12 SER A 6 91.46 -64.11 REMARK 500 12 LYS A 31 35.73 -161.77 REMARK 500 12 LEU A 40 -73.59 -70.34 REMARK 500 12 SER A 66 38.18 -96.85 REMARK 500 12 SER A 94 169.17 60.64 REMARK 500 12 SER A 98 -68.62 -124.90 REMARK 500 13 SER A 2 -48.88 -137.75 REMARK 500 13 ASP A 8 42.66 -141.40 REMARK 500 13 LYS A 31 38.92 -167.59 REMARK 500 13 LEU A 42 30.81 -147.44 REMARK 500 13 SER A 66 37.04 -96.73 REMARK 500 13 SER A 94 173.83 60.26 REMARK 500 13 SER A 95 -42.67 -169.99 REMARK 500 13 PRO A 97 173.18 -52.32 REMARK 500 13 SER A 99 -51.68 -172.69 REMARK 500 14 SER A 2 -68.20 -97.56 REMARK 500 14 ASP A 8 53.28 -153.25 REMARK 500 14 LYS A 31 31.76 -158.29 REMARK 500 14 SER A 66 32.10 -98.79 REMARK 500 14 MET A 80 -72.67 -74.04 REMARK 500 14 SER A 95 105.24 -167.50 REMARK 500 15 SER A 3 142.00 62.72 REMARK 500 15 LYS A 31 30.65 -157.83 REMARK 500 15 SER A 66 34.28 -97.76 REMARK 500 15 SER A 95 104.83 60.36 REMARK 500 15 PRO A 97 94.97 -69.97 REMARK 500 15 SER A 99 -59.02 -136.94 REMARK 500 16 SER A 3 35.63 -156.79 REMARK 500 16 SER A 6 42.37 -96.05 REMARK 500 16 ASP A 8 39.55 -140.26 REMARK 500 16 LYS A 31 35.70 -164.85 REMARK 500 17 SER A 6 35.71 -156.55 REMARK 500 17 ASP A 8 29.34 -152.22 REMARK 500 17 LYS A 31 31.64 -157.19 REMARK 500 17 LEU A 45 30.33 -96.61 REMARK 500 17 SER A 66 30.08 -98.45 REMARK 500 18 SER A 2 105.33 60.26 REMARK 500 18 SER A 5 -67.43 -104.14 REMARK 500 18 ASP A 8 41.47 -98.75 REMARK 500 18 LYS A 31 45.17 -158.55 REMARK 500 18 LEU A 42 31.25 -140.48 REMARK 500 18 SER A 66 39.03 -95.86 REMARK 500 18 SER A 94 148.72 -172.64 REMARK 500 18 SER A 99 88.66 -67.57 REMARK 500 19 LYS A 31 29.95 -153.36 REMARK 500 19 SER A 66 38.58 -97.13 REMARK 500 19 SER A 98 -63.92 -131.25 REMARK 500 19 SER A 99 -47.30 -147.02 REMARK 500 20 SER A 2 99.37 60.35 REMARK 500 20 LYS A 31 31.11 -161.08 REMARK 500 20 SER A 98 116.22 -169.36 REMARK 500 20 SER A 99 111.71 60.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 2DBF A 7 94 UNP P19838 NFKB1_HUMAN 806 893 SEQADV 2DBF GLY A 1 UNP P19838 CLONING ARTIFACT SEQADV 2DBF SER A 2 UNP P19838 CLONING ARTIFACT SEQADV 2DBF SER A 3 UNP P19838 CLONING ARTIFACT SEQADV 2DBF GLY A 4 UNP P19838 CLONING ARTIFACT SEQADV 2DBF SER A 5 UNP P19838 CLONING ARTIFACT SEQADV 2DBF SER A 6 UNP P19838 CLONING ARTIFACT SEQADV 2DBF SER A 95 UNP P19838 CLONING ARTIFACT SEQADV 2DBF GLY A 96 UNP P19838 CLONING ARTIFACT SEQADV 2DBF PRO A 97 UNP P19838 CLONING ARTIFACT SEQADV 2DBF SER A 98 UNP P19838 CLONING ARTIFACT SEQADV 2DBF SER A 99 UNP P19838 CLONING ARTIFACT SEQADV 2DBF GLY A 100 UNP P19838 CLONING ARTIFACT SEQRES 1 A 100 GLY SER SER GLY SER SER GLY ASP MET LYS GLN LEU ALA SEQRES 2 A 100 GLU ASP VAL LYS LEU GLN LEU TYR LYS LEU LEU GLU ILE SEQRES 3 A 100 PRO ASP PRO ASP LYS ASN TRP ALA THR LEU ALA GLN LYS SEQRES 4 A 100 LEU GLY LEU GLY ILE LEU ASN ASN ALA PHE ARG LEU SER SEQRES 5 A 100 PRO ALA PRO SER LYS THR LEU MET ASP ASN TYR GLU VAL SEQRES 6 A 100 SER GLY GLY THR VAL ARG GLU LEU VAL GLU ALA LEU ARG SEQRES 7 A 100 GLN MET GLY TYR THR GLU ALA ILE GLU VAL ILE GLN ALA SEQRES 8 A 100 ALA SER SER SER GLY PRO SER SER GLY HELIX 1 1 ALA A 13 GLU A 25 1 13 HELIX 2 2 ASN A 32 GLY A 41 1 10 HELIX 3 3 LEU A 42 ILE A 44 5 3 HELIX 4 4 LEU A 45 SER A 52 1 8 HELIX 5 5 ALA A 54 SER A 66 1 13 HELIX 6 6 THR A 69 GLY A 81 1 13 HELIX 7 7 THR A 83 SER A 94 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 190 0 0 7 0 0 0 6 0 0 0 8 END