HEADER RNA BINDING PROTEIN 12-DEC-05 2D9P TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN 4 IN TITLE 2 POLYADENYLATION BINDING PROTEIN 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: POLYA, -BINDING PROTEIN 3, PABP 3, TESTIS- COMPND 6 SPECIFIC POLYA, -BINDING PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PABP3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050516-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 2 24-FEB-09 2D9P 1 VERSN REVDAT 1 12-JUN-06 2D9P 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN 4 IN JRNL TITL 2 POLYADENYLATION BINDING PROTEIN 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D9P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025160. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH 7.0), REMARK 210 100MM NACL, 1MM D-DTT, 0.02% REMARK 210 NAN3, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 287 38.15 35.49 REMARK 500 1 GLN A 292 95.71 -59.83 REMARK 500 1 PRO A 316 -17.34 -47.97 REMARK 500 1 GLU A 328 34.31 -94.67 REMARK 500 1 PHE A 335 147.54 -171.32 REMARK 500 1 GLU A 352 -19.19 -49.94 REMARK 500 1 ASN A 354 111.01 -36.30 REMARK 500 1 ALA A 359 -73.09 -116.43 REMARK 500 1 THR A 360 -47.62 -132.98 REMARK 500 1 TYR A 364 96.82 -68.43 REMARK 500 1 SER A 379 91.44 -60.95 REMARK 500 2 ASN A 300 37.87 74.50 REMARK 500 2 LEU A 310 -71.12 -67.61 REMARK 500 2 PRO A 316 -17.04 -48.02 REMARK 500 2 MET A 326 95.58 -68.39 REMARK 500 2 GLU A 352 -27.90 -39.99 REMARK 500 2 VAL A 358 -40.90 -131.95 REMARK 500 2 ALA A 359 -66.82 -130.21 REMARK 500 2 THR A 360 -54.52 -133.00 REMARK 500 2 LYS A 371 116.70 -161.86 REMARK 500 2 PRO A 378 150.37 -45.60 REMARK 500 3 ARG A 309 -36.49 -35.19 REMARK 500 3 LEU A 310 -75.12 -68.05 REMARK 500 3 PHE A 314 -30.41 -130.22 REMARK 500 3 PRO A 316 -17.59 -47.95 REMARK 500 3 ASN A 354 111.96 -34.25 REMARK 500 3 THR A 360 -53.23 -131.60 REMARK 500 3 LYS A 371 105.04 -170.25 REMARK 500 4 ASP A 302 157.93 -44.79 REMARK 500 4 LEU A 310 -74.50 -55.42 REMARK 500 4 PRO A 316 -17.88 -48.03 REMARK 500 4 PHE A 317 -61.09 -100.45 REMARK 500 4 ASN A 354 115.95 -34.02 REMARK 500 4 ALA A 359 -72.83 -118.55 REMARK 500 4 THR A 360 -51.74 -132.14 REMARK 500 4 GLN A 369 78.72 -101.06 REMARK 500 4 LYS A 371 -70.84 -106.73 REMARK 500 5 SER A 280 44.01 35.61 REMARK 500 5 LEU A 310 -70.53 -57.28 REMARK 500 5 PRO A 316 -17.10 -47.92 REMARK 500 5 ASN A 354 110.18 -34.89 REMARK 500 5 ALA A 359 -70.63 -125.11 REMARK 500 5 THR A 360 -52.91 -132.03 REMARK 500 5 ALA A 368 -61.41 -105.18 REMARK 500 5 GLU A 373 153.59 -44.99 REMARK 500 5 PRO A 378 156.48 -46.17 REMARK 500 6 SER A 283 147.26 -173.06 REMARK 500 6 LEU A 310 -70.29 -60.22 REMARK 500 6 PRO A 316 -17.02 -48.07 REMARK 500 6 GLU A 328 64.50 -113.37 REMARK 500 6 ASN A 354 118.66 -33.96 REMARK 500 6 ALA A 359 -69.76 -131.27 REMARK 500 6 THR A 360 -51.20 -133.68 REMARK 500 6 TYR A 364 97.69 -65.23 REMARK 500 7 ILE A 288 100.26 -49.47 REMARK 500 7 ASN A 300 39.15 74.78 REMARK 500 7 LEU A 310 -75.08 -55.37 REMARK 500 7 PRO A 316 -16.73 -48.03 REMARK 500 7 ASN A 354 109.07 -46.10 REMARK 500 7 ALA A 359 -74.36 -123.00 REMARK 500 8 GLU A 308 -72.23 -68.63 REMARK 500 8 ARG A 309 -38.89 -36.99 REMARK 500 8 LEU A 310 -70.72 -63.32 REMARK 500 8 PRO A 316 -17.05 -47.94 REMARK 500 8 GLU A 328 38.79 -96.18 REMARK 500 8 ASN A 354 116.23 -34.22 REMARK 500 8 ALA A 359 -68.24 -120.75 REMARK 500 8 THR A 360 -54.44 -130.88 REMARK 500 8 ARG A 374 127.82 -174.93 REMARK 500 8 PRO A 378 38.81 -77.99 REMARK 500 9 ASP A 302 163.68 -46.35 REMARK 500 9 LEU A 310 -71.95 -62.38 REMARK 500 9 PRO A 316 -17.06 -47.95 REMARK 500 9 GLU A 344 -37.92 -39.01 REMARK 500 9 GLU A 352 -29.76 -37.44 REMARK 500 9 MET A 353 -61.30 -100.24 REMARK 500 9 ASN A 354 101.07 -36.80 REMARK 500 9 THR A 360 -52.65 -133.76 REMARK 500 9 TYR A 364 88.28 -68.08 REMARK 500 9 LYS A 371 131.77 -170.49 REMARK 500 9 SER A 376 -56.79 -130.92 REMARK 500 10 GLU A 308 -70.25 -62.25 REMARK 500 10 LEU A 310 -70.92 -60.72 REMARK 500 10 PRO A 316 -17.16 -48.00 REMARK 500 10 ASN A 354 110.53 -36.10 REMARK 500 10 ALA A 359 -69.23 -126.10 REMARK 500 10 THR A 360 -55.25 -130.11 REMARK 500 11 GLN A 292 95.77 -62.29 REMARK 500 11 LEU A 310 -74.28 -50.22 REMARK 500 11 PRO A 316 -17.13 -48.00 REMARK 500 11 ASN A 354 105.92 -40.72 REMARK 500 11 ALA A 359 -70.44 -105.72 REMARK 500 11 THR A 360 -47.41 -133.64 REMARK 500 11 PRO A 378 101.89 -45.60 REMARK 500 12 LEU A 310 -75.27 -67.74 REMARK 500 12 PRO A 316 -17.21 -47.89 REMARK 500 12 GLU A 328 -62.01 -98.55 REMARK 500 12 GLU A 344 -70.04 -35.75 REMARK 500 12 ASN A 354 109.54 -59.22 REMARK 500 12 VAL A 358 -54.01 -131.97 REMARK 500 12 ALA A 359 -72.72 -113.01 REMARK 500 12 THR A 360 -49.08 -131.86 REMARK 500 12 LYS A 371 144.40 -172.74 REMARK 500 12 GLU A 372 109.14 -166.16 REMARK 500 12 ARG A 374 144.77 -174.55 REMARK 500 13 GLN A 292 96.81 -48.26 REMARK 500 13 LEU A 310 -72.55 -61.89 REMARK 500 13 PRO A 316 -16.67 -48.03 REMARK 500 13 THR A 347 -74.50 -52.04 REMARK 500 13 ASN A 354 97.44 -58.98 REMARK 500 13 ALA A 359 -68.97 -120.28 REMARK 500 13 THR A 360 -51.25 -134.32 REMARK 500 14 LEU A 310 -74.83 -53.91 REMARK 500 14 PHE A 314 -32.85 -133.72 REMARK 500 14 PRO A 316 -17.17 -47.95 REMARK 500 14 GLU A 328 43.41 -107.24 REMARK 500 14 ASN A 354 103.98 -39.49 REMARK 500 14 ALA A 359 -65.18 -126.26 REMARK 500 14 THR A 360 -53.89 -134.52 REMARK 500 14 TYR A 364 99.73 -61.38 REMARK 500 14 LYS A 371 141.28 -38.46 REMARK 500 15 ASP A 302 155.98 -37.52 REMARK 500 15 LEU A 310 -71.93 -57.36 REMARK 500 15 PRO A 316 -16.69 -47.94 REMARK 500 15 VAL A 358 -48.01 -132.52 REMARK 500 15 ALA A 359 -68.59 -125.80 REMARK 500 15 THR A 360 -53.14 -130.79 REMARK 500 16 ASP A 302 132.09 -36.05 REMARK 500 16 LEU A 310 -73.77 -56.65 REMARK 500 16 PRO A 316 -16.57 -47.97 REMARK 500 16 GLU A 352 -18.84 -49.08 REMARK 500 16 ASN A 354 96.01 -59.10 REMARK 500 16 VAL A 358 -39.46 -132.26 REMARK 500 16 ALA A 359 -71.36 -133.22 REMARK 500 16 THR A 360 -55.05 -128.96 REMARK 500 17 TYR A 291 140.55 -174.85 REMARK 500 17 ASP A 302 162.05 -45.92 REMARK 500 17 LEU A 310 -75.45 -52.23 REMARK 500 17 PRO A 316 -16.63 -47.98 REMARK 500 17 MET A 326 86.40 -68.86 REMARK 500 17 MET A 353 -62.03 -102.19 REMARK 500 17 ASN A 354 107.22 -40.66 REMARK 500 17 VAL A 358 -41.06 -132.23 REMARK 500 17 ALA A 359 -71.91 -126.64 REMARK 500 17 THR A 360 -50.16 -131.63 REMARK 500 17 TYR A 364 94.56 -66.34 REMARK 500 17 LYS A 371 140.91 -174.07 REMARK 500 18 THR A 289 44.49 -92.45 REMARK 500 18 LEU A 310 -75.75 -53.96 REMARK 500 18 PRO A 316 -16.89 -47.92 REMARK 500 18 GLU A 328 -66.43 -93.14 REMARK 500 18 ARG A 331 115.00 -168.34 REMARK 500 18 SER A 332 104.87 -54.95 REMARK 500 18 ALA A 359 -67.85 -109.01 REMARK 500 18 THR A 360 -49.06 -134.87 REMARK 500 18 ARG A 370 132.28 -172.00 REMARK 500 19 ASP A 302 158.03 -46.12 REMARK 500 19 PRO A 316 -15.51 -48.04 REMARK 500 19 ASN A 354 96.43 -58.14 REMARK 500 19 ALA A 359 -75.24 -100.79 REMARK 500 19 TYR A 364 81.61 -67.80 REMARK 500 19 ARG A 370 102.29 -34.61 REMARK 500 19 SER A 376 -60.55 -122.49 REMARK 500 19 SER A 379 117.37 -167.00 REMARK 500 20 ASP A 286 150.24 -35.30 REMARK 500 20 TYR A 291 35.03 35.43 REMARK 500 20 GLN A 292 46.17 36.31 REMARK 500 20 VAL A 293 93.06 -66.61 REMARK 500 20 PRO A 316 -17.25 -47.99 REMARK 500 20 GLU A 328 -51.47 -124.33 REMARK 500 20 ASN A 354 112.38 -35.77 REMARK 500 20 VAL A 358 -38.81 -131.84 REMARK 500 20 ALA A 359 -72.68 -125.65 REMARK 500 20 THR A 360 -52.22 -131.71 REMARK 500 20 TYR A 364 97.38 -64.52 REMARK 500 20 GLN A 369 47.89 32.43 REMARK 500 20 ARG A 374 -59.11 -127.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012034.1 RELATED DB: TARGETDB DBREF 2D9P A 286 375 UNP Q9H361 PABP3_HUMAN 286 375 SEQADV 2D9P GLY A 279 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P SER A 280 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P SER A 281 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P GLY A 282 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P SER A 283 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P SER A 284 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P GLY A 285 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P SER A 376 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P GLY A 377 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P PRO A 378 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P SER A 379 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P SER A 380 UNP Q9H361 CLONING ARTIFACT SEQADV 2D9P GLY A 381 UNP Q9H361 CLONING ARTIFACT SEQRES 1 A 103 GLY SER SER GLY SER SER GLY ASP ARG ILE THR ARG TYR SEQRES 2 A 103 GLN VAL VAL ASN LEU TYR VAL LYS ASN LEU ASP ASP GLY SEQRES 3 A 103 ILE ASP ASP GLU ARG LEU ARG LYS ALA PHE SER PRO PHE SEQRES 4 A 103 GLY THR ILE THR SER ALA LYS VAL MET MET GLU GLY GLY SEQRES 5 A 103 ARG SER LYS GLY PHE GLY PHE VAL CYS PHE SER SER PRO SEQRES 6 A 103 GLU GLU ALA THR LYS ALA VAL THR GLU MET ASN GLY ARG SEQRES 7 A 103 ILE VAL ALA THR LYS PRO LEU TYR VAL ALA LEU ALA GLN SEQRES 8 A 103 ARG LYS GLU GLU ARG GLN SER GLY PRO SER SER GLY HELIX 1 1 ASP A 306 ALA A 313 1 8 HELIX 2 2 SER A 342 ASN A 354 1 13 SHEET 1 A 4 ILE A 320 MET A 327 0 SHEET 2 A 4 SER A 332 PHE A 340 -1 O PHE A 337 N LYS A 324 SHEET 3 A 4 LEU A 296 LYS A 299 -1 N LEU A 296 O VAL A 338 SHEET 4 A 4 TYR A 364 LEU A 367 -1 O ALA A 366 N TYR A 297 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 251 0 0 2 4 0 0 6 0 0 0 8 END