HEADER RNA BINDING PROTEIN 12-DEC-05 2D9N TITLE SOLUTION STRUCTURE OF CCCH TYPE ZINC-FINGER DOMAIN 2 IN TITLE 2 CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, COMPND 3 30 KDA SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: CCCH-TYPE ZINC FINGER MOTIF; COMPND 6 SYNONYM: CPSF 30 KDA SUBUNIT, NS1 EFFECTOR DOMAIN-BINDING COMPND 7 PROTEIN 1, NEB-1, NO ARCHES HOMOLOG; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CPSF4; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050302-51; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CCCH ZINC-FINGER, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 2 24-FEB-09 2D9N 1 VERSN REVDAT 1 12-JUN-06 2D9N 0 JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF CCCH TYPE ZINC-FINGER DOMAIN JRNL TITL 2 2 IN CLEAVAGE AND POLYADENYLATION SPECIFICITY JRNL TITL 3 FACTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT,P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D9N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025158. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, REMARK 210 50UM ZNCL2+1MM IDA, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.93191, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 60 143.01 -170.29 REMARK 500 1 THR A 65 -36.83 -36.65 REMARK 500 1 CYS A 82 166.10 -48.95 REMARK 500 1 LYS A 101 -63.25 -103.40 REMARK 500 1 SER A 106 45.23 -89.74 REMARK 500 1 PRO A 111 3.65 -69.80 REMARK 500 1 PRO A 117 3.02 -69.71 REMARK 500 1 CYS A 124 157.67 -42.38 REMARK 500 2 THR A 65 -32.25 -36.16 REMARK 500 2 LYS A 101 -64.45 -103.46 REMARK 500 2 SER A 106 41.55 -98.06 REMARK 500 2 PRO A 111 3.68 -69.80 REMARK 500 2 PRO A 117 2.20 -69.77 REMARK 500 2 ASP A 123 73.09 -66.32 REMARK 500 3 LYS A 64 0.24 -69.94 REMARK 500 3 THR A 65 -38.31 -33.49 REMARK 500 3 LYS A 101 -64.99 -102.67 REMARK 500 3 SER A 106 39.33 -94.86 REMARK 500 3 GLU A 109 43.49 -102.48 REMARK 500 3 PRO A 111 4.33 -69.79 REMARK 500 3 PRO A 117 1.78 -69.79 REMARK 500 3 CYS A 124 162.69 -43.10 REMARK 500 3 PRO A 125 4.41 -69.73 REMARK 500 3 SER A 131 -45.00 -133.06 REMARK 500 4 SER A 61 38.71 -83.35 REMARK 500 4 THR A 65 -37.96 -32.46 REMARK 500 4 LYS A 101 -64.41 -100.81 REMARK 500 4 SER A 106 44.18 -92.90 REMARK 500 4 GLU A 109 47.83 -109.82 REMARK 500 4 PRO A 111 3.56 -69.79 REMARK 500 4 PRO A 117 1.44 -69.82 REMARK 500 4 LYS A 120 54.02 -102.65 REMARK 500 4 ASP A 123 44.74 -103.21 REMARK 500 4 TRP A 126 150.95 -49.74 REMARK 500 4 SER A 127 123.49 -174.59 REMARK 500 5 SER A 60 94.48 -51.72 REMARK 500 5 GLU A 63 176.32 -59.60 REMARK 500 5 THR A 65 -36.26 -33.64 REMARK 500 5 CYS A 82 166.21 -49.74 REMARK 500 5 PHE A 98 -70.77 -71.86 REMARK 500 5 LYS A 101 -63.64 -101.67 REMARK 500 5 SER A 106 40.78 -90.84 REMARK 500 5 GLU A 109 42.64 -101.91 REMARK 500 5 PRO A 111 2.95 -69.72 REMARK 500 5 PRO A 117 3.42 -69.78 REMARK 500 5 PRO A 125 2.89 -69.75 REMARK 500 6 GLU A 63 -175.12 -69.09 REMARK 500 6 LYS A 64 0.03 -68.83 REMARK 500 6 THR A 65 -35.71 -32.61 REMARK 500 6 CYS A 82 165.51 -48.65 REMARK 500 6 LYS A 101 -64.92 -104.79 REMARK 500 6 SER A 106 43.33 -100.56 REMARK 500 6 GLU A 109 41.12 -100.42 REMARK 500 6 PRO A 111 3.34 -69.76 REMARK 500 6 PRO A 117 1.41 -69.80 REMARK 500 6 ASP A 123 44.67 -97.29 REMARK 500 7 GLU A 63 -177.67 -53.66 REMARK 500 7 THR A 65 -36.69 -33.36 REMARK 500 7 LYS A 101 -62.95 -103.17 REMARK 500 7 SER A 106 42.47 -103.70 REMARK 500 7 GLU A 109 43.66 -103.03 REMARK 500 7 PRO A 111 3.67 -69.77 REMARK 500 7 PRO A 117 2.01 -69.72 REMARK 500 7 LYS A 122 -64.40 -108.58 REMARK 500 7 CYS A 124 151.03 -34.46 REMARK 500 7 TRP A 126 95.31 -69.70 REMARK 500 7 SER A 127 -66.66 -98.61 REMARK 500 7 SER A 130 -51.81 -128.67 REMARK 500 7 SER A 131 134.45 -174.52 REMARK 500 8 SER A 57 43.51 -93.85 REMARK 500 8 GLU A 63 178.72 -58.55 REMARK 500 8 THR A 65 -37.02 -35.80 REMARK 500 8 LYS A 101 -62.94 -102.33 REMARK 500 8 PRO A 111 3.10 -69.74 REMARK 500 8 LYS A 120 49.12 -97.35 REMARK 500 8 CYS A 124 161.52 -42.24 REMARK 500 8 PRO A 125 4.07 -69.79 REMARK 500 9 SER A 60 168.62 -45.43 REMARK 500 9 GLU A 63 -178.17 -59.66 REMARK 500 9 THR A 65 -38.09 -34.43 REMARK 500 9 LYS A 101 -65.09 -102.55 REMARK 500 9 SER A 106 44.89 -100.16 REMARK 500 9 GLU A 109 46.32 -109.44 REMARK 500 9 PRO A 111 4.11 -69.78 REMARK 500 9 PRO A 117 0.54 -69.77 REMARK 500 9 ILE A 121 150.37 -39.76 REMARK 500 9 LYS A 122 -60.42 -97.98 REMARK 500 9 PRO A 125 2.31 -69.75 REMARK 500 9 PRO A 129 2.43 -69.76 REMARK 500 9 SER A 131 130.14 -39.77 REMARK 500 10 SER A 57 41.49 -109.20 REMARK 500 10 SER A 61 108.67 -44.69 REMARK 500 10 LYS A 101 -64.85 -104.94 REMARK 500 10 SER A 106 42.80 -95.58 REMARK 500 10 PRO A 111 4.09 -69.78 REMARK 500 10 PRO A 117 0.71 -69.74 REMARK 500 10 CYS A 124 158.93 -41.43 REMARK 500 10 PRO A 125 1.78 -69.82 REMARK 500 11 THR A 65 -34.61 -33.08 REMARK 500 11 LYS A 101 -64.80 -103.44 REMARK 500 11 SER A 106 40.40 -104.71 REMARK 500 11 PRO A 111 3.51 -69.74 REMARK 500 11 PRO A 117 2.78 -69.67 REMARK 500 11 LYS A 120 45.48 -90.26 REMARK 500 11 CYS A 124 152.17 -41.03 REMARK 500 11 PRO A 125 1.17 -69.76 REMARK 500 11 SER A 130 42.81 -104.38 REMARK 500 12 GLU A 63 -177.42 -50.32 REMARK 500 12 THR A 65 -33.19 -34.13 REMARK 500 12 GLU A 95 173.23 -51.38 REMARK 500 12 PHE A 98 -70.28 -69.07 REMARK 500 12 LYS A 101 -63.29 -101.67 REMARK 500 12 SER A 106 38.16 -95.94 REMARK 500 12 GLU A 109 42.34 -103.19 REMARK 500 12 PRO A 111 3.40 -69.73 REMARK 500 12 PRO A 117 2.41 -69.74 REMARK 500 12 ASP A 123 -72.17 -38.16 REMARK 500 12 CYS A 124 153.31 -42.98 REMARK 500 12 PRO A 125 0.72 -69.80 REMARK 500 13 SER A 60 78.34 -69.74 REMARK 500 13 GLU A 63 -178.16 -56.61 REMARK 500 13 THR A 65 -36.87 -38.45 REMARK 500 13 LYS A 101 -64.07 -103.53 REMARK 500 13 SER A 106 44.49 -107.44 REMARK 500 13 PRO A 111 3.69 -69.73 REMARK 500 13 PRO A 117 3.15 -69.78 REMARK 500 13 LYS A 120 48.34 -89.47 REMARK 500 13 ASP A 123 45.38 -83.21 REMARK 500 13 PRO A 125 0.41 -69.78 REMARK 500 14 LYS A 64 0.55 -69.70 REMARK 500 14 THR A 65 -35.05 -32.65 REMARK 500 14 LYS A 78 -63.25 -105.95 REMARK 500 14 LYS A 101 -65.31 -93.55 REMARK 500 14 SER A 106 40.18 -107.07 REMARK 500 14 PRO A 111 7.54 -69.75 REMARK 500 14 PRO A 117 1.82 -69.76 REMARK 500 14 ASP A 123 56.70 -100.63 REMARK 500 14 PRO A 125 3.50 -69.73 REMARK 500 15 SER A 60 171.44 -49.94 REMARK 500 15 THR A 65 -37.90 -31.29 REMARK 500 15 LYS A 101 -65.21 -94.81 REMARK 500 15 SER A 106 42.48 -90.72 REMARK 500 15 GLU A 109 42.04 -97.93 REMARK 500 15 PRO A 111 5.68 -69.72 REMARK 500 15 PRO A 117 1.97 -69.82 REMARK 500 15 CYS A 124 163.08 -49.13 REMARK 500 15 PRO A 125 3.30 -69.78 REMARK 500 16 GLU A 63 -177.48 -58.94 REMARK 500 16 THR A 65 -35.88 -38.25 REMARK 500 16 CYS A 82 164.75 -49.00 REMARK 500 16 LYS A 101 -63.99 -105.06 REMARK 500 16 SER A 106 43.13 -98.79 REMARK 500 16 GLU A 109 47.20 -108.43 REMARK 500 16 PRO A 111 3.64 -69.77 REMARK 500 16 SER A 130 -175.26 -63.22 REMARK 500 17 THR A 65 -36.79 -33.43 REMARK 500 17 CYS A 82 160.94 -48.71 REMARK 500 17 LYS A 101 -64.14 -102.80 REMARK 500 17 SER A 106 40.24 -91.90 REMARK 500 17 PRO A 111 3.46 -69.71 REMARK 500 17 PRO A 117 3.13 -69.76 REMARK 500 17 LYS A 120 49.03 -92.04 REMARK 500 17 LYS A 122 -66.45 -91.86 REMARK 500 17 ASP A 123 76.40 -61.96 REMARK 500 17 PRO A 125 1.66 -69.80 REMARK 500 17 SER A 127 177.83 -54.54 REMARK 500 17 SER A 130 143.46 -173.85 REMARK 500 18 GLU A 63 -178.13 -67.08 REMARK 500 18 THR A 65 -29.31 -36.78 REMARK 500 18 LYS A 101 -65.02 -104.90 REMARK 500 18 SER A 106 45.06 -101.91 REMARK 500 18 PRO A 111 4.05 -69.74 REMARK 500 18 PRO A 117 2.22 -69.79 REMARK 500 18 LYS A 120 38.81 -85.47 REMARK 500 18 CYS A 124 156.14 -45.37 REMARK 500 18 SER A 131 42.63 -88.82 REMARK 500 19 GLU A 63 177.53 -52.32 REMARK 500 19 LYS A 92 31.87 -89.61 REMARK 500 19 GLU A 95 175.05 -50.65 REMARK 500 19 LYS A 101 -63.98 -103.94 REMARK 500 19 SER A 106 43.35 -102.47 REMARK 500 19 GLU A 109 47.28 -108.57 REMARK 500 19 PRO A 111 4.67 -69.76 REMARK 500 19 PRO A 117 3.00 -69.78 REMARK 500 19 PRO A 125 0.81 -69.81 REMARK 500 19 SER A 130 79.54 -101.76 REMARK 500 20 CYS A 82 155.67 -48.73 REMARK 500 20 CYS A 96 106.02 -55.08 REMARK 500 20 LYS A 101 -64.16 -103.05 REMARK 500 20 SER A 106 43.61 -90.52 REMARK 500 20 GLU A 109 41.24 -100.43 REMARK 500 20 PRO A 111 5.05 -69.79 REMARK 500 20 PRO A 117 1.38 -69.81 REMARK 500 20 CYS A 124 145.14 -37.89 REMARK 500 20 TRP A 126 102.14 -38.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 256 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 68 SG REMARK 620 2 CYS A 76 SG 116.8 REMARK 620 3 CYS A 82 SG 92.7 118.5 REMARK 620 4 HIS A 86 NE2 111.5 118.4 94.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 456 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 96 SG REMARK 620 2 CYS A 105 SG 108.3 REMARK 620 3 CYS A 110 SG 116.3 115.7 REMARK 620 4 HIS A 114 NE2 107.9 90.0 115.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 256 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 456 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002004475.1 RELATED DB: TARGETDB DBREF 2D9N A 61 126 UNP O95639 CPSF4_HUMAN 61 126 SEQADV 2D9N GLY A 56 UNP O95639 CLONING ARTIFACT SEQADV 2D9N SER A 57 UNP O95639 CLONING ARTIFACT SEQADV 2D9N SER A 58 UNP O95639 CLONING ARTIFACT SEQADV 2D9N GLY A 59 UNP O95639 CLONING ARTIFACT SEQADV 2D9N SER A 60 UNP O95639 CLONING ARTIFACT SEQADV 2D9N SER A 127 UNP O95639 CLONING ARTIFACT SEQADV 2D9N GLY A 128 UNP O95639 CLONING ARTIFACT SEQADV 2D9N PRO A 129 UNP O95639 CLONING ARTIFACT SEQADV 2D9N SER A 130 UNP O95639 CLONING ARTIFACT SEQADV 2D9N SER A 131 UNP O95639 CLONING ARTIFACT SEQADV 2D9N GLY A 132 UNP O95639 CLONING ARTIFACT SEQRES 1 A 77 GLY SER SER GLY SER SER GLY GLU LYS THR VAL VAL CYS SEQRES 2 A 77 LYS HIS TRP LEU ARG GLY LEU CYS LYS LYS GLY ASP GLN SEQRES 3 A 77 CYS GLU PHE LEU HIS GLU TYR ASP MET THR LYS MET PRO SEQRES 4 A 77 GLU CYS TYR PHE TYR SER LYS PHE GLY GLU CYS SER ASN SEQRES 5 A 77 LYS GLU CYS PRO PHE LEU HIS ILE ASP PRO GLU SER LYS SEQRES 6 A 77 ILE LYS ASP CYS PRO TRP SER GLY PRO SER SER GLY HET ZN A 256 1 HET ZN A 456 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 CYS A 68 ARG A 73 1 6 HELIX 2 2 CYS A 96 PHE A 102 1 7 LINK ZN ZN A 256 SG CYS A 68 1555 1555 2.37 LINK ZN ZN A 256 SG CYS A 76 1555 1555 2.33 LINK ZN ZN A 256 SG CYS A 82 1555 1555 2.33 LINK ZN ZN A 256 NE2 HIS A 86 1555 1555 2.33 LINK ZN ZN A 456 SG CYS A 96 1555 1555 2.35 LINK ZN ZN A 456 SG CYS A 105 1555 1555 2.37 LINK ZN ZN A 456 SG CYS A 110 1555 1555 2.36 LINK ZN ZN A 456 NE2 HIS A 114 1555 1555 2.37 SITE 1 AC1 4 CYS A 68 CYS A 76 CYS A 82 HIS A 86 SITE 1 AC2 4 CYS A 96 CYS A 105 CYS A 110 HIS A 114 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 300 0 2 2 0 0 2 6 0 0 0 6 END