HEADER TRANSLATION 16-NOV-05 2D74 TITLE CRYSTAL STRUCTURE OF TRANSLATION INITIATION FACTOR AIF2BETAGAMMA TITLE 2 HETERODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR 2 GAMMA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EIF-2-GAMMA, AIF2-GAMMA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: EIF-2-BETA, AIF2-BETA; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: DSM 3638; SOURCE 5 GENE: PF1717; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODONPLUS-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 13 ORGANISM_TAXID: 186497; SOURCE 14 STRAIN: DSM 3638; SOURCE 15 GENE: PF0481; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODONPLUS-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS PROTEIN COMPLEX, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR M.SOKABE,M.YAO,N.SAKAI,S.TOYA,I.TANAKA REVDAT 5 13-JUL-11 2D74 1 VERSN REVDAT 4 21-JUL-09 2D74 1 JRNL REVDAT 3 24-FEB-09 2D74 1 VERSN REVDAT 2 01-AUG-06 2D74 1 TITLE REVDAT 1 25-JUL-06 2D74 0 JRNL AUTH M.SOKABE,M.YAO,N.SAKAI,S.TOYA,I.TANAKA JRNL TITL STRUCTURE OF ARCHAEAL TRANSLATIONAL INITIATION FACTOR 2 JRNL TITL 2 BETAGAMMA-GDP REVEALS SIGNIFICANT CONFORMATIONAL CHANGE OF JRNL TITL 3 THE BETA-SUBUNIT AND SWITCH 1 REGION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 13016 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16924118 JRNL DOI 10.1073/PNAS.0604165103 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 12851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 966 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1055 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 73 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4216 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.70900 REMARK 3 B22 (A**2) : 6.68800 REMARK 3 B33 (A**2) : -21.39700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.47 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.49 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.85 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.93 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.14 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-05. REMARK 100 THE RCSB ID CODE IS RCSB025069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12894 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1KK1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 0.1M TRIS-HCL, 0.2M REMARK 280 MAGNESIUM CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.23350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.10500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.08850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.10500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.23350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.08850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 ARG A 5 REMARK 465 HIS A 39 REMARK 465 SER A 40 REMARK 465 GLU A 41 REMARK 465 GLU A 42 REMARK 465 GLU A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 140 REMARK 465 LEU B 141 REMARK 465 GLU B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 222 N GLY A 224 2.05 REMARK 500 O ILE B 118 O PHE B 125 2.13 REMARK 500 O ILE A 393 O HOH A 1128 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 224 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 THR A 225 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 PRO A 257 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 HIS A 261 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 GLY A 262 N - CA - C ANGL. DEV. = -21.3 DEGREES REMARK 500 ARG B 29 N - CA - C ANGL. DEV. = -26.1 DEGREES REMARK 500 PHE B 125 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 LYS B 127 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 44 -147.11 -152.95 REMARK 500 ARG A 45 7.18 -157.64 REMARK 500 TYR A 75 -84.71 -90.82 REMARK 500 SER A 91 109.81 -164.65 REMARK 500 CYS A 121 -79.91 -44.31 REMARK 500 LYS A 147 34.24 71.95 REMARK 500 PRO A 223 85.29 -53.24 REMARK 500 THR A 225 -9.25 68.95 REMARK 500 GLU A 228 -123.44 -53.73 REMARK 500 LYS A 229 40.86 -93.13 REMARK 500 ARG A 253 -110.92 -75.97 REMARK 500 GLU A 260 59.37 16.38 REMARK 500 ARG A 263 -60.49 -93.47 REMARK 500 ALA A 278 117.05 -162.08 REMARK 500 GLN A 341 -74.29 -54.22 REMARK 500 LYS A 351 2.54 81.03 REMARK 500 GLN A 396 -75.59 -61.42 REMARK 500 ILE A 397 71.37 70.53 REMARK 500 ASP B 7 79.64 -102.14 REMARK 500 PRO B 20 166.25 -41.89 REMARK 500 ASN B 22 -28.45 -35.64 REMARK 500 HIS B 26 -70.63 -18.72 REMARK 500 LEU B 68 -8.62 -51.39 REMARK 500 LYS B 127 171.86 171.67 REMARK 500 GLN B 138 24.74 -151.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 CYS A 121 24.4 L L OUTSIDE RANGE REMARK 500 THR A 225 23.4 L L OUTSIDE RANGE REMARK 500 ARG A 253 22.2 L L OUTSIDE RANGE REMARK 500 GLU A 260 24.6 L L OUTSIDE RANGE REMARK 500 ARG B 29 47.0 L L OUTSIDE RANGE REMARK 500 LYS B 127 22.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1061 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A1063 DISTANCE = 5.43 ANGSTROMS REMARK 525 HOH A1067 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A1068 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A1072 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH A1082 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A1085 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1103 DISTANCE = 8.68 ANGSTROMS REMARK 525 HOH A1112 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1120 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B1023 DISTANCE = 5.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 64 SG REMARK 620 2 CYS A 73 SG 110.7 REMARK 620 3 CYS A 76 SG 131.4 100.4 REMARK 620 4 CYS A 61 SG 110.5 102.1 97.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 131 SG REMARK 620 2 CYS B 107 SG 100.6 REMARK 620 3 CYS B 128 SG 97.7 127.7 REMARK 620 4 CYS B 110 SG 94.2 117.9 109.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 DBREF 2D74 A 1 411 UNP Q8U082 IF2G_PYRFU 1 411 DBREF 2D74 B 1 140 UNP Q8U3I5 IF2B_PYRFU 1 140 SEQADV 2D74 ASP A 236 UNP Q8U082 GLY 236 ENGINEERED SEQADV 2D74 LEU A 412 UNP Q8U082 EXPRESSION TAG SEQADV 2D74 GLU A 413 UNP Q8U082 EXPRESSION TAG SEQADV 2D74 HIS A 414 UNP Q8U082 EXPRESSION TAG SEQADV 2D74 HIS A 415 UNP Q8U082 EXPRESSION TAG SEQADV 2D74 HIS A 416 UNP Q8U082 EXPRESSION TAG SEQADV 2D74 HIS A 417 UNP Q8U082 EXPRESSION TAG SEQADV 2D74 HIS A 418 UNP Q8U082 EXPRESSION TAG SEQADV 2D74 HIS A 419 UNP Q8U082 EXPRESSION TAG SEQADV 2D74 LEU B 141 UNP Q8U3I5 EXPRESSION TAG SEQADV 2D74 GLU B 142 UNP Q8U3I5 EXPRESSION TAG SEQADV 2D74 HIS B 143 UNP Q8U3I5 EXPRESSION TAG SEQADV 2D74 HIS B 144 UNP Q8U3I5 EXPRESSION TAG SEQADV 2D74 HIS B 145 UNP Q8U3I5 EXPRESSION TAG SEQADV 2D74 HIS B 146 UNP Q8U3I5 EXPRESSION TAG SEQADV 2D74 HIS B 147 UNP Q8U3I5 EXPRESSION TAG SEQADV 2D74 HIS B 148 UNP Q8U3I5 EXPRESSION TAG SEQRES 1 A 419 MET GLY GLU LYS ARG LYS THR ARG GLN ALA GLU VAL ASN SEQRES 2 A 419 ILE GLY MET VAL GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 A 419 LEU THR LYS ALA LEU THR GLY VAL TRP THR ASP THR HIS SEQRES 4 A 419 SER GLU GLU LEU ARG ARG GLY ILE THR ILE LYS ILE GLY SEQRES 5 A 419 PHE ALA ASP ALA GLU ILE ARG ARG CYS SER ASN CYS GLY SEQRES 6 A 419 ARG TYR SER THR SER PRO ILE CYS PRO TYR CYS GLY HIS SEQRES 7 A 419 GLU THR GLU PHE ILE ARG ARG VAL SER PHE ILE ASP SER SEQRES 8 A 419 PRO GLY HIS GLU ALA LEU MET THR THR MET LEU ALA GLY SEQRES 9 A 419 ALA SER LEU MET ASP GLY ALA ILE LEU VAL ILE ALA ALA SEQRES 10 A 419 ASN GLU PRO CYS PRO ARG PRO GLN THR ARG GLU HIS LEU SEQRES 11 A 419 MET ALA LEU GLN ILE ILE GLY GLN LYS ASN ILE ILE ILE SEQRES 12 A 419 ALA GLN ASN LYS ILE GLU LEU VAL ASP LYS GLU LYS ALA SEQRES 13 A 419 LEU GLU ASN TYR ARG GLN ILE LYS GLU PHE ILE LYS GLY SEQRES 14 A 419 THR VAL ALA GLU ASN ALA PRO ILE ILE PRO ILE SER ALA SEQRES 15 A 419 LEU HIS GLY ALA ASN ILE ASP VAL LEU VAL LYS ALA ILE SEQRES 16 A 419 GLU GLU PHE ILE PRO THR PRO LYS ARG ASP SER ASN LYS SEQRES 17 A 419 PRO PRO LYS MET LEU VAL LEU ARG SER PHE ASP VAL ASN SEQRES 18 A 419 LYS PRO GLY THR PRO PRO GLU LYS LEU VAL GLY GLY VAL SEQRES 19 A 419 LEU ASP GLY SER ILE VAL GLN GLY LYS LEU LYS VAL GLY SEQRES 20 A 419 ASP GLU ILE GLU ILE ARG PRO GLY VAL PRO TYR GLU GLU SEQRES 21 A 419 HIS GLY ARG ILE LYS TYR GLU PRO ILE THR THR GLU ILE SEQRES 22 A 419 VAL SER LEU GLN ALA GLY GLY GLN PHE VAL GLU GLU ALA SEQRES 23 A 419 TYR PRO GLY GLY LEU VAL GLY ILE GLY THR LYS LEU ASP SEQRES 24 A 419 PRO TYR LEU THR LYS GLY ASP LEU MET ALA GLY ASN VAL SEQRES 25 A 419 VAL GLY LYS PRO GLY LYS LEU PRO PRO VAL TRP THR ASP SEQRES 26 A 419 LEU ARG LEU GLU VAL HIS LEU LEU GLU ARG VAL VAL GLY SEQRES 27 A 419 THR GLU GLN GLU LEU ASN VAL GLU PRO ILE LYS ARG LYS SEQRES 28 A 419 GLU VAL LEU LEU LEU ASN VAL GLY THR ALA ARG THR MET SEQRES 29 A 419 GLY LEU VAL THR ALA LEU GLY LYS ASP GLU ILE GLU LEU SEQRES 30 A 419 LYS LEU GLN ILE PRO VAL CYS ALA GLU PRO GLY GLU ARG SEQRES 31 A 419 VAL ALA ILE SER ARG GLN ILE GLY SER ARG TRP ARG LEU SEQRES 32 A 419 ILE GLY TYR GLY ILE ILE LYS GLU LEU GLU HIS HIS HIS SEQRES 33 A 419 HIS HIS HIS SEQRES 1 B 148 MET GLU ILE ASP TYR TYR ASP TYR GLU LYS LEU LEU GLU SEQRES 2 B 148 LYS ALA TYR GLN GLU LEU PRO GLU ASN VAL LYS HIS HIS SEQRES 3 B 148 LYS SER ARG PHE GLU VAL PRO GLY ALA LEU VAL THR ILE SEQRES 4 B 148 GLU GLY ASN LYS THR ILE ILE GLU ASN PHE LYS ASP ILE SEQRES 5 B 148 ALA ASP ALA LEU ASN ARG ASP PRO GLN HIS LEU LEU LYS SEQRES 6 B 148 PHE LEU LEU ARG GLU ILE ALA THR ALA GLY THR LEU GLU SEQRES 7 B 148 GLY ARG ARG VAL VAL LEU GLN GLY ARG PHE THR PRO TYR SEQRES 8 B 148 LEU ILE ALA ASN LYS LEU LYS LYS TYR ILE LYS GLU TYR SEQRES 9 B 148 VAL ILE CYS PRO VAL CYS GLY SER PRO ASP THR LYS ILE SEQRES 10 B 148 ILE LYS ARG ASP ARG PHE HIS PHE LEU LYS CYS GLU ALA SEQRES 11 B 148 CYS GLY ALA GLU THR PRO ILE GLN HIS LEU LEU GLU HIS SEQRES 12 B 148 HIS HIS HIS HIS HIS HET ZN A1001 1 HET ZN B1002 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *180(H2 O) HELIX 1 1 GLY A 23 GLY A 33 1 11 HELIX 2 2 VAL A 34 THR A 36 5 3 HELIX 3 3 GLY A 93 GLY A 104 1 12 HELIX 4 4 ARG A 123 ILE A 136 1 14 HELIX 5 5 ILE A 148 VAL A 151 5 4 HELIX 6 6 ASP A 152 LYS A 168 1 17 HELIX 7 7 ASN A 187 PHE A 198 1 12 HELIX 8 8 ASP A 299 LYS A 304 1 6 HELIX 9 9 GLY A 305 LEU A 307 5 3 HELIX 10 10 THR A 339 ASN A 344 1 6 HELIX 11 11 ASP B 7 LYS B 14 1 8 HELIX 12 12 PRO B 20 HIS B 25 1 6 HELIX 13 13 ASN B 48 ASN B 57 1 10 HELIX 14 14 PRO B 60 ILE B 71 1 12 HELIX 15 15 THR B 89 VAL B 105 1 17 SHEET 1 A 7 TYR A 67 SER A 68 0 SHEET 2 A 7 GLY A 52 CYS A 61 -1 N ARG A 59 O SER A 68 SHEET 3 A 7 THR A 80 ASP A 90 -1 O PHE A 88 N ALA A 54 SHEET 4 A 7 ASN A 13 GLY A 18 1 N MET A 16 O ILE A 89 SHEET 5 A 7 GLY A 110 ALA A 116 1 O ILE A 112 N GLY A 15 SHEET 6 A 7 ILE A 141 ASN A 146 1 O ALA A 144 N LEU A 113 SHEET 7 A 7 ILE A 177 ILE A 180 1 O ILE A 178 N ILE A 143 SHEET 1 B 8 GLN A 281 PHE A 282 0 SHEET 2 B 8 THR A 270 ALA A 278 -1 N ALA A 278 O GLN A 281 SHEET 3 B 8 VAL A 292 THR A 296 -1 O GLY A 295 N VAL A 274 SHEET 4 B 8 VAL A 234 GLN A 241 -1 N LEU A 235 O ILE A 294 SHEET 5 B 8 LYS A 211 PHE A 218 -1 N ARG A 216 O ASP A 236 SHEET 6 B 8 VAL A 312 GLY A 314 -1 O VAL A 313 N MET A 212 SHEET 7 B 8 GLU A 249 ILE A 252 -1 N GLU A 251 O GLY A 314 SHEET 8 B 8 THR A 270 ALA A 278 -1 O THR A 271 N ILE A 250 SHEET 1 C 2 LEU A 244 LYS A 245 0 SHEET 2 C 2 GLU A 285 ALA A 286 -1 O ALA A 286 N LEU A 244 SHEET 1 D 2 VAL A 256 PRO A 257 0 SHEET 2 D 2 TYR A 266 GLU A 267 -1 O GLU A 267 N VAL A 256 SHEET 1 E 7 VAL A 322 LEU A 328 0 SHEET 2 E 7 ILE A 375 CYS A 384 -1 O LEU A 377 N LEU A 326 SHEET 3 E 7 ALA A 361 LEU A 370 -1 N MET A 364 O GLN A 380 SHEET 4 E 7 VAL A 353 VAL A 358 -1 N LEU A 356 O THR A 363 SHEET 5 E 7 ARG A 390 ARG A 395 -1 O ALA A 392 N ASN A 357 SHEET 6 E 7 ARG A 402 ILE A 408 -1 O ARG A 402 N ARG A 395 SHEET 7 E 7 HIS A 331 LEU A 332 -1 N HIS A 331 O TYR A 406 SHEET 1 F 4 VAL B 37 GLU B 40 0 SHEET 2 F 4 LYS B 43 ILE B 46 -1 O LYS B 43 N GLU B 40 SHEET 3 F 4 ARG B 81 LEU B 84 -1 O LEU B 84 N THR B 44 SHEET 4 F 4 GLY B 75 GLU B 78 -1 N GLU B 78 O ARG B 81 SSBOND 1 CYS B 110 CYS B 131 1555 1555 3.12 LINK ZN ZN A1001 SG CYS A 64 1555 1555 2.12 LINK ZN ZN A1001 SG CYS A 73 1555 1555 2.12 LINK ZN ZN A1001 SG CYS A 76 1555 1555 2.11 LINK ZN ZN A1001 SG CYS A 61 1555 1555 2.14 LINK ZN ZN B1002 SG CYS B 131 1555 1555 2.12 LINK ZN ZN B1002 SG CYS B 107 1555 1555 2.11 LINK ZN ZN B1002 SG CYS B 128 1555 1555 2.15 LINK ZN ZN B1002 SG CYS B 110 1555 1555 2.14 SITE 1 AC1 4 CYS A 61 CYS A 64 CYS A 73 CYS A 76 SITE 1 AC2 4 CYS B 107 CYS B 110 CYS B 128 CYS B 131 CRYST1 68.467 76.177 98.210 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014606 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010182 0.00000 MASTER 405 0 2 15 30 0 2 6 0 0 0 45 END