HEADER TRANSFERASE 16-SEP-05 2D2R TITLE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UNDECAPRENYL PYROPHOSPHATE TITLE 2 SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNDECAPRENYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.31; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 STRAIN: ATCC43504; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32 XA/LIC KEYWDS PRENYL, PRENYLTRANSFERASE, UNDECAPRENYL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.KUO,R.T.GUO,C.L.CHEN,T.P.KO,Y.S.CHENG,Y.L.CHENG,P.H.LIANG,A.H.- AUTHOR 2 J.WANG REVDAT 3 25-AUG-10 2D2R 1 JRNL REVDAT 2 24-FEB-09 2D2R 1 VERSN REVDAT 1 26-SEP-06 2D2R 0 JRNL AUTH C.J.KUO,R.T.GUO,I.L.LU,H.G.LIU,S.Y.WU,T.P.KO,A.H.WANG, JRNL AUTH 2 P.H.LIANG JRNL TITL STRUCTURE-BASED INHIBITORS EXHIBIT DIFFERENTIAL ACTIVITIES JRNL TITL 2 AGAINST HELICOBACTER PYLORI AND ESCHERICHIA COLI JRNL TITL 3 UNDECAPRENYL PYROPHOSPHATE SYNTHASES. JRNL REF J.BIOMED.BIOTECHNOL. V.2008 84131 2008 JRNL REFN ISSN 1110-7243 JRNL PMID 18382620 JRNL DOI 10.1155/2008/841312 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 34629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1717 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.18 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 140 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3454 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 581 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 1.82 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D2R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-05. REMARK 100 THE RCSB ID CODE IS RCSB024915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL17B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35917 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1X06 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: KSCN, PEG600, PEG5KMME, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.81500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.71250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.45700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.71250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.81500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.45700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 LEU A -9 REMARK 465 SER A -8 REMARK 465 ALA A -7 REMARK 465 THR A -6 REMARK 465 GLN A -5 REMARK 465 PRO A -4 REMARK 465 LEU A -3 REMARK 465 SER A -2 REMARK 465 GLU A -1 REMARK 465 LYS A 0 REMARK 465 LEU A 1 REMARK 465 ASP A 2 REMARK 465 SER A 58 REMARK 465 THR A 59 REMARK 465 GLU A 60 REMARK 465 ASN A 61 REMARK 465 TRP A 62 REMARK 465 LYS A 63 REMARK 465 ARG A 64 REMARK 465 PRO A 65 REMARK 465 LYS A 66 REMARK 465 SER A 67 REMARK 465 LYS A 228 REMARK 465 PHE A 229 REMARK 465 GLY A 230 REMARK 465 GLU A 231 REMARK 465 LEU A 232 REMARK 465 LYS A 233 REMARK 465 ALA A 234 REMARK 465 MET B -10 REMARK 465 LEU B -9 REMARK 465 SER B -8 REMARK 465 ALA B -7 REMARK 465 THR B -6 REMARK 465 GLN B -5 REMARK 465 PRO B -4 REMARK 465 LEU B -3 REMARK 465 SER B -2 REMARK 465 GLU B -1 REMARK 465 LYS B 0 REMARK 465 LEU B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 ALA B 56 REMARK 465 PHE B 57 REMARK 465 SER B 58 REMARK 465 THR B 59 REMARK 465 GLU B 60 REMARK 465 ASN B 61 REMARK 465 TRP B 62 REMARK 465 LYS B 63 REMARK 465 ARG B 64 REMARK 465 PRO B 65 REMARK 465 LYS B 66 REMARK 465 SER B 67 REMARK 465 GLU B 68 REMARK 465 VAL B 69 REMARK 465 ASP B 70 REMARK 465 PHE B 71 REMARK 465 PRO B 150 REMARK 465 SER B 151 REMARK 465 ASN B 152 REMARK 465 ILE B 153 REMARK 465 SER B 154 REMARK 465 LEU B 155 REMARK 465 LEU B 156 REMARK 465 GLU B 157 REMARK 465 SER B 158 REMARK 465 LEU B 232 REMARK 465 LYS B 233 REMARK 465 ALA B 234 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 523 O HOH B 545 2.11 REMARK 500 O HOH B 306 O HOH B 401 2.13 REMARK 500 O HOH B 337 O HOH B 338 2.14 REMARK 500 OD2 ASP A 89 O HOH A 362 2.16 REMARK 500 O HOH B 275 O HOH B 533 2.16 REMARK 500 OD2 ASP A 82 O HOH A 449 2.19 REMARK 500 O LYS B 24 O HOH B 376 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN B 171 C - N - CA ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 -73.33 -59.30 REMARK 500 ARG A 26 -36.48 -38.48 REMARK 500 ASP A 82 -70.99 -55.64 REMARK 500 ARG A 119 -0.94 -55.27 REMARK 500 GLU A 157 -63.32 -129.66 REMARK 500 ASN A 171 -3.52 74.33 REMARK 500 VAL A 226 79.56 -63.64 REMARK 500 MET B 185 77.04 -119.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 55 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 274 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 292 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH A 298 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH B 301 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 302 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH A 315 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A 317 DISTANCE = 5.56 ANGSTROMS REMARK 525 HOH A 323 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 324 DISTANCE = 9.05 ANGSTROMS REMARK 525 HOH A 325 DISTANCE = 8.22 ANGSTROMS REMARK 525 HOH A 326 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH B 333 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH A 337 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH B 337 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH A 340 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH B 349 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH A 354 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH A 357 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A 365 DISTANCE = 5.80 ANGSTROMS REMARK 525 HOH A 366 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A 369 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A 386 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH A 387 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 404 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH B 406 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B 415 DISTANCE = 10.10 ANGSTROMS REMARK 525 HOH B 423 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 424 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B 425 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A 431 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 433 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH A 439 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH B 439 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A 440 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH B 441 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A 443 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH B 445 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A 446 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 447 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B 448 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH A 461 DISTANCE = 5.54 ANGSTROMS REMARK 525 HOH A 463 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A 465 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A 466 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 472 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 476 DISTANCE = 8.36 ANGSTROMS REMARK 525 HOH B 477 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 478 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH B 478 DISTANCE = 10.60 ANGSTROMS REMARK 525 HOH A 485 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH B 494 DISTANCE = 8.47 ANGSTROMS REMARK 525 HOH B 497 DISTANCE = 8.14 ANGSTROMS REMARK 525 HOH B 504 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH B 505 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH B 506 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH B 522 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 527 DISTANCE = 8.21 ANGSTROMS REMARK 525 HOH B 531 DISTANCE = 10.72 ANGSTROMS REMARK 525 HOH B 538 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH B 543 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH B 544 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH B 546 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH B 556 DISTANCE = 5.48 ANGSTROMS REMARK 525 HOH B 557 DISTANCE = 7.64 ANGSTROMS DBREF 2D2R A 2 233 UNP P55984 UPPS_HELPY 2 233 DBREF 2D2R B 2 233 UNP P55984 UPPS_HELPY 2 233 SEQRES 1 A 245 MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU ASP SEQRES 2 A 245 SER THR LEU LYS HIS LEU ALA ILE ILE MET ASP GLY ASN SEQRES 3 A 245 GLY ARG TRP ALA LYS LEU LYS ASN LYS ALA ARG ALA TYR SEQRES 4 A 245 GLY HIS LYS LYS GLY VAL LYS THR LEU LYS ASP ILE THR SEQRES 5 A 245 ILE TRP CYS ALA ASN HIS LYS LEU GLU CYS LEU THR LEU SEQRES 6 A 245 TYR ALA PHE SER THR GLU ASN TRP LYS ARG PRO LYS SER SEQRES 7 A 245 GLU VAL ASP PHE LEU MET LYS MET LEU LYS LYS TYR LEU SEQRES 8 A 245 LYS ASP GLU ARG SER THR TYR LEU ASP ASN ASN ILE ARG SEQRES 9 A 245 PHE ARG ALA ILE GLY ASP LEU GLU GLY PHE SER LYS GLU SEQRES 10 A 245 LEU ARG ASP THR ILE LEU GLN LEU GLU ASN ASP THR ARG SEQRES 11 A 245 HIS PHE LYS ASP PHE THR GLN VAL LEU ALA LEU ASN TYR SEQRES 12 A 245 GLY SER LYS ASN GLU LEU SER ARG ALA PHE LYS SER LEU SEQRES 13 A 245 LEU GLU SER PRO PRO SER ASN ILE SER LEU LEU GLU SER SEQRES 14 A 245 LEU GLU ASN GLU ILE SER ASN ARG LEU ASP THR ARG ASN SEQRES 15 A 245 LEU PRO GLU VAL ASP LEU LEU LEU ARG THR GLY GLY GLU SEQRES 16 A 245 MET ARG LEU SER ASN PHE LEU LEU TRP GLN SER SER TYR SEQRES 17 A 245 ALA GLU LEU PHE PHE THR PRO ILE LEU TRP PRO ASP PHE SEQRES 18 A 245 THR PRO LYS ASP LEU GLU ASN ILE ILE SER ASP PHE TYR SEQRES 19 A 245 LYS ARG VAL ARG LYS PHE GLY GLU LEU LYS ALA SEQRES 1 B 245 MET LEU SER ALA THR GLN PRO LEU SER GLU LYS LEU ASP SEQRES 2 B 245 SER THR LEU LYS HIS LEU ALA ILE ILE MET ASP GLY ASN SEQRES 3 B 245 GLY ARG TRP ALA LYS LEU LYS ASN LYS ALA ARG ALA TYR SEQRES 4 B 245 GLY HIS LYS LYS GLY VAL LYS THR LEU LYS ASP ILE THR SEQRES 5 B 245 ILE TRP CYS ALA ASN HIS LYS LEU GLU CYS LEU THR LEU SEQRES 6 B 245 TYR ALA PHE SER THR GLU ASN TRP LYS ARG PRO LYS SER SEQRES 7 B 245 GLU VAL ASP PHE LEU MET LYS MET LEU LYS LYS TYR LEU SEQRES 8 B 245 LYS ASP GLU ARG SER THR TYR LEU ASP ASN ASN ILE ARG SEQRES 9 B 245 PHE ARG ALA ILE GLY ASP LEU GLU GLY PHE SER LYS GLU SEQRES 10 B 245 LEU ARG ASP THR ILE LEU GLN LEU GLU ASN ASP THR ARG SEQRES 11 B 245 HIS PHE LYS ASP PHE THR GLN VAL LEU ALA LEU ASN TYR SEQRES 12 B 245 GLY SER LYS ASN GLU LEU SER ARG ALA PHE LYS SER LEU SEQRES 13 B 245 LEU GLU SER PRO PRO SER ASN ILE SER LEU LEU GLU SER SEQRES 14 B 245 LEU GLU ASN GLU ILE SER ASN ARG LEU ASP THR ARG ASN SEQRES 15 B 245 LEU PRO GLU VAL ASP LEU LEU LEU ARG THR GLY GLY GLU SEQRES 16 B 245 MET ARG LEU SER ASN PHE LEU LEU TRP GLN SER SER TYR SEQRES 17 B 245 ALA GLU LEU PHE PHE THR PRO ILE LEU TRP PRO ASP PHE SEQRES 18 B 245 THR PRO LYS ASP LEU GLU ASN ILE ILE SER ASP PHE TYR SEQRES 19 B 245 LYS ARG VAL ARG LYS PHE GLY GLU LEU LYS ALA FORMUL 3 HOH *581(H2 O) HELIX 1 1 GLY A 14 LEU A 21 1 8 HELIX 2 2 ALA A 25 ASN A 46 1 22 HELIX 3 3 GLU A 68 ASN A 90 1 23 HELIX 4 4 ASP A 99 PHE A 103 5 5 HELIX 5 5 SER A 104 ARG A 119 1 16 HELIX 6 6 GLY A 133 SER A 148 1 16 HELIX 7 7 ASN A 152 LEU A 156 5 5 HELIX 8 8 LEU A 159 ASN A 165 1 7 HELIX 9 9 LEU A 206 PHE A 210 5 5 HELIX 10 10 THR A 211 VAL A 226 1 16 HELIX 11 11 GLY B 14 ASN B 23 1 10 HELIX 12 12 ALA B 25 HIS B 47 1 23 HELIX 13 13 LEU B 72 ASN B 90 1 19 HELIX 14 14 ASP B 99 PHE B 103 5 5 HELIX 15 15 SER B 104 ARG B 119 1 16 HELIX 16 16 GLY B 133 SER B 148 1 16 HELIX 17 17 LEU B 159 ASN B 165 1 7 HELIX 18 18 LEU B 206 PHE B 210 5 5 HELIX 19 19 THR B 211 GLY B 230 1 20 SHEET 1 A 6 ARG A 93 ILE A 97 0 SHEET 2 A 6 THR A 125 LEU A 130 1 O LEU A 130 N ILE A 97 SHEET 3 A 6 CYS A 51 PHE A 57 1 N LEU A 52 O VAL A 127 SHEET 4 A 6 HIS A 7 ILE A 11 1 N ILE A 10 O THR A 53 SHEET 5 A 6 LEU A 177 ARG A 180 1 O LEU A 179 N ALA A 9 SHEET 6 A 6 GLU A 199 PHE A 202 1 O GLU A 199 N LEU A 178 SHEET 1 B 6 ILE B 92 ILE B 97 0 SHEET 2 B 6 PHE B 124 ALA B 129 1 O GLN B 126 N ARG B 93 SHEET 3 B 6 CYS B 51 TYR B 55 1 N LEU B 52 O VAL B 127 SHEET 4 B 6 HIS B 7 ILE B 11 1 N ILE B 10 O THR B 53 SHEET 5 B 6 LEU B 177 ARG B 180 1 O LEU B 179 N ALA B 9 SHEET 6 B 6 GLU B 199 PHE B 202 1 O GLU B 199 N LEU B 178 CRYST1 49.630 58.914 153.425 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020149 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006518 0.00000 MASTER 444 0 0 19 12 0 0 6 0 0 0 38 END