HEADER TRANSFERASE 08-JUL-05 2CYU TITLE NMR STRUCTURE OF A DOWNHILL FOLDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE DEHYDROGENASE MULTIENZYME COMPLEX; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: E3-BINDING DOMAIN; COMPND 5 SYNONYM: DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPND 6 COMPONENT OF 2- OXOGLUTARATE DEHYDROGENASE COMPLEX; COMPND 7 EC: 2.3.1.61; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 4 SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN E COLI. KEYWDS HELIX BUNDLE, DOWNHILL FOLDING PROTEIN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.MUNOZ,M.SADQI REVDAT 3 24-FEB-09 2CYU 1 VERSN REVDAT 2 15-AUG-06 2CYU 1 JRNL REVDAT 1 15-JUL-06 2CYU 0 JRNL AUTH M.SADQI,D.FUSHMAN,V.MUNOZ JRNL TITL ATOM-BY-ATOM ANALYSIS OF GLOBAL DOWNHILL PROTEIN JRNL TITL 2 FOLDING. JRNL REF NATURE V. 442 317 2006 JRNL REFN ISSN 0028-0836 JRNL PMID 16799571 JRNL DOI 10.1038/NATURE04859 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.11 REMARK 3 AUTHORS : C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FIRST THREE RESIDUES OF OUR REMARK 3 PROTEIN VARIANT ARE NOT STRUCTURED (NO DISTANCE RESTRAINTS). REMARK 3 ACCORDINGLY, THE COORDINATES FOR THE N-TERMINAL REMARK 3 NAPHTHYLALANINE ARE NOT SHOWN REMARK 4 REMARK 4 2CYU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB024776. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 5.3 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 90% H2O, 10% D2O, TRACE REMARK 210 AMOUNTS OF DSS FOR NMR REMARK 210 CALIBRATION REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D COSY, 2D TOCSY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, NMRPIPE SGI6X, REMARK 210 NMRVIEW 5.0.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 NAL A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 4 88.86 -65.45 REMARK 500 1 ALA A 17 -17.88 -44.68 REMARK 500 1 SER A 18 35.60 -87.89 REMARK 500 1 VAL A 25 113.84 54.46 REMARK 500 1 ASP A 33 -60.40 -92.56 REMARK 500 1 LEU A 38 -108.29 -67.35 REMARK 500 1 ALA A 39 29.73 49.95 REMARK 500 2 SER A 3 68.92 -166.47 REMARK 500 2 PRO A 4 0.51 -64.23 REMARK 500 2 ASN A 14 74.18 80.68 REMARK 500 2 ALA A 17 -15.94 -45.12 REMARK 500 2 ASP A 33 -65.66 -91.69 REMARK 500 2 VAL A 34 -28.19 -38.37 REMARK 500 2 HIS A 37 -79.23 -68.52 REMARK 500 2 LEU A 38 -88.03 -48.11 REMARK 500 2 ALA A 39 159.50 -45.15 REMARK 500 3 SER A 3 68.91 -171.54 REMARK 500 3 ASN A 14 75.31 84.76 REMARK 500 3 ALA A 17 -12.29 -47.88 REMARK 500 3 HIS A 37 -75.04 -67.32 REMARK 500 3 LEU A 38 -106.43 -62.41 REMARK 500 3 ALA A 39 17.29 49.60 REMARK 500 4 SER A 3 -52.26 -178.36 REMARK 500 4 PRO A 4 1.44 -63.53 REMARK 500 4 ASN A 14 71.48 80.05 REMARK 500 4 ALA A 17 -18.17 -45.21 REMARK 500 4 ALA A 19 20.65 -76.56 REMARK 500 4 ILE A 20 -136.10 -143.48 REMARK 500 4 LYS A 21 134.23 -170.84 REMARK 500 4 THR A 23 -23.26 61.69 REMARK 500 4 ASP A 33 -63.47 -90.68 REMARK 500 4 HIS A 37 -71.84 -67.99 REMARK 500 4 LEU A 38 -105.46 -62.09 REMARK 500 5 SER A 3 69.82 -166.65 REMARK 500 5 PRO A 4 85.98 -63.40 REMARK 500 5 ALA A 17 -14.27 -47.37 REMARK 500 5 SER A 18 32.51 -87.01 REMARK 500 5 LYS A 21 -138.16 -83.32 REMARK 500 5 THR A 23 -20.91 62.88 REMARK 500 5 ARG A 28 -108.31 -87.50 REMARK 500 5 ASP A 33 -60.72 -91.05 REMARK 500 5 LEU A 38 -105.40 -62.50 REMARK 500 6 SER A 3 -51.95 -178.37 REMARK 500 6 PRO A 4 2.74 -63.91 REMARK 500 6 ASN A 14 70.77 80.77 REMARK 500 6 ALA A 17 -15.32 -46.26 REMARK 500 6 LYS A 21 -139.14 -102.70 REMARK 500 6 THR A 23 -21.22 62.45 REMARK 500 6 LEU A 38 -109.13 -71.31 REMARK 500 7 SER A 3 70.03 -173.04 REMARK 500 7 ASN A 14 73.98 82.79 REMARK 500 7 ALA A 17 -16.61 -45.45 REMARK 500 7 LYS A 21 -141.69 -101.22 REMARK 500 7 VAL A 25 151.85 51.99 REMARK 500 7 LEU A 38 -108.03 -64.88 REMARK 500 7 ALA A 39 -155.97 49.88 REMARK 500 8 ASN A 14 71.61 81.17 REMARK 500 8 ARG A 28 -115.20 -77.41 REMARK 500 8 LEU A 29 149.78 -171.62 REMARK 500 8 ASP A 33 -63.24 -91.78 REMARK 500 8 LEU A 38 -108.37 -66.25 REMARK 500 9 ASN A 14 72.28 81.04 REMARK 500 9 ALA A 17 -18.56 -43.75 REMARK 500 9 ILE A 20 -138.48 -144.73 REMARK 500 9 LYS A 21 126.40 -171.39 REMARK 500 9 ASP A 33 -64.10 -92.65 REMARK 500 9 HIS A 37 -72.24 -65.74 REMARK 500 9 LEU A 38 -103.74 -60.71 REMARK 500 10 SER A 3 69.72 -163.61 REMARK 500 10 ASN A 14 73.66 79.13 REMARK 500 10 ALA A 17 -13.00 -47.69 REMARK 500 10 ASP A 33 -60.60 -92.32 REMARK 500 10 HIS A 37 -74.01 -69.98 REMARK 500 10 LEU A 38 -106.78 -66.27 REMARK 500 11 SER A 3 67.90 -166.83 REMARK 500 11 ASN A 14 72.66 77.62 REMARK 500 11 ASP A 16 106.07 -59.49 REMARK 500 11 ALA A 17 -13.99 -46.52 REMARK 500 11 LYS A 21 -138.45 -95.33 REMARK 500 11 HIS A 37 -70.22 -67.95 REMARK 500 11 LEU A 38 -106.72 -65.07 REMARK 500 11 ALA A 39 -159.81 50.12 REMARK 500 12 ARG A 8 -70.29 -78.37 REMARK 500 12 ASN A 14 71.96 79.91 REMARK 500 12 ALA A 17 -19.76 -43.56 REMARK 500 12 LYS A 21 -139.89 -93.42 REMARK 500 12 ARG A 28 -114.94 -83.28 REMARK 500 12 ASP A 33 -60.56 -91.74 REMARK 500 12 LEU A 38 -107.15 -65.76 REMARK 500 12 ALA A 39 74.62 49.82 REMARK 500 13 ASN A 14 74.15 80.12 REMARK 500 13 ALA A 17 -13.44 -47.24 REMARK 500 13 ALA A 19 -88.89 -68.07 REMARK 500 13 ILE A 20 172.77 -47.91 REMARK 500 13 LYS A 21 -140.76 -124.50 REMARK 500 13 VAL A 34 -23.92 -39.93 REMARK 500 13 LEU A 38 -108.15 -70.79 REMARK 500 13 ALA A 39 80.45 50.45 REMARK 500 14 SER A 3 69.46 -170.60 REMARK 500 14 PRO A 4 93.85 -63.44 REMARK 500 14 ASN A 14 72.88 77.17 REMARK 500 14 ALA A 17 -14.12 -46.66 REMARK 500 14 LEU A 38 -108.25 -66.37 REMARK 500 14 ALA A 39 -154.91 49.91 REMARK 500 15 PRO A 4 12.88 -65.53 REMARK 500 15 ASN A 14 74.24 82.95 REMARK 500 15 ALA A 17 -19.42 -43.65 REMARK 500 15 SER A 18 35.12 -83.90 REMARK 500 15 ASP A 33 -61.49 -94.88 REMARK 500 15 HIS A 37 -70.18 -65.24 REMARK 500 15 LEU A 38 -105.51 -62.29 REMARK 500 16 SER A 3 70.67 50.03 REMARK 500 16 ARG A 8 -74.34 -77.11 REMARK 500 16 ASN A 14 73.25 77.25 REMARK 500 16 ALA A 17 -13.13 -47.46 REMARK 500 16 ARG A 28 -116.91 -77.83 REMARK 500 16 ASP A 33 -61.42 -92.77 REMARK 500 16 LEU A 38 -111.02 -74.73 REMARK 500 16 ALA A 39 -138.83 50.03 REMARK 500 17 ASN A 14 72.23 80.84 REMARK 500 17 ALA A 17 -13.46 -47.57 REMARK 500 17 LYS A 21 -137.45 -101.23 REMARK 500 17 LEU A 38 -108.41 -67.54 REMARK 500 17 ALA A 39 -161.32 49.77 REMARK 500 18 PRO A 4 102.74 -57.51 REMARK 500 18 ASN A 14 63.62 64.48 REMARK 500 18 LEU A 15 -165.61 -123.30 REMARK 500 18 ASP A 33 -62.47 -96.33 REMARK 500 18 HIS A 37 -70.08 -65.11 REMARK 500 18 LEU A 38 -107.82 -68.05 REMARK 500 18 ALA A 39 -176.85 50.39 REMARK 500 19 PRO A 4 98.88 -62.60 REMARK 500 19 ARG A 8 -70.82 -77.83 REMARK 500 19 ASN A 14 69.61 75.10 REMARK 500 19 ASP A 33 -62.87 -94.91 REMARK 500 19 LEU A 38 -107.71 -65.88 REMARK 500 19 ALA A 39 96.84 50.09 REMARK 500 20 SER A 3 69.27 -171.62 REMARK 500 20 PRO A 4 90.52 -63.05 REMARK 500 20 ARG A 8 -71.62 -77.99 REMARK 500 20 ASN A 14 72.01 79.60 REMARK 500 20 ALA A 17 -14.19 -47.13 REMARK 500 20 ALA A 19 23.74 -76.79 REMARK 500 20 ASP A 33 -63.11 -90.59 REMARK 500 20 LEU A 38 -107.72 -67.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BBL RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE OF E3 BINDING DOMAIN OF 2- REMARK 900 OXOGLUTARATE DEHYDROGENASE COMPLEX OF E COLI REMARK 900 RELATED ID: 1BAL RELATED DB: PDB REMARK 900 FAMILY OF 56 STRUCTURES OF E3 BINDING DOMAIN OF 2- REMARK 900 OXOGLUTARATE DEHYDROGENASE COMPLEX OF E COLI WITH 10 EXTRA REMARK 900 UNSTRUCTURED RESIDUES IN N-TERMINUS DBREF 2CYU A 2 40 UNP P0AFG7 ODO2_ECO57 113 151 SEQRES 1 A 40 NAL LEU SER PRO ALA ILE ARG ARG LEU LEU ALA GLU HIS SEQRES 2 A 40 ASN LEU ASP ALA SER ALA ILE LYS GLY THR GLY VAL GLY SEQRES 3 A 40 GLY ARG LEU THR ARG GLU ASP VAL GLU LYS HIS LEU ALA SEQRES 4 A 40 LYS HELIX 1 1 ALA A 5 ASN A 14 1 10 HELIX 2 2 ASP A 16 ILE A 20 5 5 HELIX 3 3 THR A 30 LEU A 38 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 232 0 0 3 0 0 0 6 0 0 0 4 END