HEADER OXIDOREDUCTASE 13-JUN-05 2CVQ TITLE CRYSTAL STRUCTURE OF NAD(H)-DEPENDENT MALATE DEHYDROGENASE COMPLEXED TITLE 2 WITH NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.37; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 STRAIN: AT-62; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM105; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC19-TMDH KEYWDS NAD-DEPENDENT-MDH NADP+ COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TOMITA,S.FUSHINOBU,T.KUZUYAMA,M.NISHIYAMA REVDAT 3 20-NOV-13 2CVQ 1 HET HETATM HETNAM VERSN REVDAT 2 24-FEB-09 2CVQ 1 VERSN REVDAT 1 02-AUG-05 2CVQ 0 JRNL AUTH T.TOMITA,S.FUSHINOBU,T.KUZUYAMA,M.NISHIYAMA JRNL TITL CRYSTAL STRUCTURE OF NAD-DEPENDENT MALATE DEHYDROGENASE JRNL TITL 2 COMPLEXED WITH NADP(H) JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 334 613 2005 JRNL REFN ISSN 0006-291X JRNL PMID 16009341 JRNL DOI 10.1016/J.BBRC.2005.06.133 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.A.KELLY,M.NISHIYAMA,Y.OHNISHI,T.BEPPU,J.J.BIRKTOFT REMARK 1 TITL DETERMINANTS OF PROTEIN THERMOSTABILITY OBSERVED IN THE REMARK 1 TITL 2 1.9-A CRYSTAL STRUCTURE OF MALATE DEHYDROGENASE FROM THE REMARK 1 TITL 3 THERMOPHILIC BACTERIUM THERMUS FLAVUS REMARK 1 REF BIOCHEMISTRY V. 32 3913 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 8471603 REMARK 1 DOI 10.1021/BI00066A010 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.A.KELLY,S.SARFATY,M.NISHIYAMA,T.BEPPU,J.J.BIRKTOFT REMARK 1 TITL PRELIMINARY X-RAY DIFFRACTION ANALYSIS OF A CRYSTALLIZABLE REMARK 1 TITL 2 MUTANT OF MALATE DEHYDROGENASE FROM THE THERMOPHILE THERMUS REMARK 1 TITL 3 FLAVUS REMARK 1 REF J.MOL.BIOL. V. 221 383 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 1920425 REMARK 1 DOI 10.1016/0022-2836(91)80060-8 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.J.BIRKTOFT,G.RHODES,L.J.BANASZAK REMARK 1 TITL REFINED CRYSTAL STRUCTURE OF CYTOPLASMIC MALATE REMARK 1 TITL 2 DEHYDROGENASE AT 2.5-A RESOLUTION REMARK 1 REF BIOCHEMISTRY V. 28 6065 1989 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 2775751 REMARK 1 DOI 10.1021/BI00440A051 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.NISHIYAMA,N.MATSUBARA,K.YAMAMOTO,S.IIJIMA,T.UOZUMI,T.BEPPU REMARK 1 TITL NUCLEOTIDE SEQUENCE OF THE MALATE DEHYDROGENASE GENE OF REMARK 1 TITL 2 THERMUS FLAVUS AND ITS MUTATION DIRECTING AN INCREASE IN REMARK 1 TITL 3 ENZYME ACTIVITY REMARK 1 REF J.BIOL.CHEM. V. 261 14178 1986 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 3771528 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.J.BIRKTOFT,L.J.BANASZAK REMARK 1 TITL THE PRESENCE OF A HISTIDINE-ASPARTIC ACID PAIR IN THE ACTIVE REMARK 1 TITL 2 SITE OF 2-HYDROXYACID DEHYDROGENASES. X-RAY REFINEMENT OF REMARK 1 TITL 3 CYTOPLASMIC MALATE DEHYDROGENASE REMARK 1 REF J.BIOL.CHEM. V. 258 472 1983 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 6848515 REMARK 1 REFERENCE 6 REMARK 1 AUTH L.J.BANASZAK,R.A.BRADSHAW REMARK 1 TITL MALATE DEHYDROGENASES REMARK 1 REF ENZYME V. 11 369 1975 REMARK 1 REFN ISSN 0013-9432 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2209383.010 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2111 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6469 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 328 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4978 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 331 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.60000 REMARK 3 B22 (A**2) : 3.53000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.01 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.03 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.82 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.170 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.760 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.520 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.650 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 54.71 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NADPH-N.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NADPH-N.MTF REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB024676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43032 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 69.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: MALATE DEHYDROGENASE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.14500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.03500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.58000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.03500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.14500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.58000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -Z, -X+1, Y. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 1.33 -69.44 REMARK 500 ALA A 88 -167.26 -129.47 REMARK 500 SER A 187 -162.60 -68.35 REMARK 500 LEU A 209 3.90 -69.38 REMARK 500 VAL A 221 -52.61 -120.05 REMARK 500 LEU A 258 -67.82 -90.48 REMARK 500 TYR A 277 18.23 52.81 REMARK 500 ASP A 293 51.49 38.76 REMARK 500 ALA B 88 -158.72 -133.15 REMARK 500 SER B 187 -164.23 -73.15 REMARK 500 VAL B 221 -53.83 -123.50 REMARK 500 TYR B 277 19.43 57.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B4725 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH B4742 DISTANCE = 6.26 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NDP A 334 REMARK 610 NDP B 1334 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 4617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 4619 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 4621 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 4623 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BMD RELATED DB: PDB REMARK 900 MALATE DEHYDROGENASE COMPLEXED WITH NADH REMARK 900 RELATED ID: 1Y7T RELATED DB: PDB REMARK 900 MALATE DEHYDROGENASE COMPLEXED WITH NADPH DBREF 2CVQ A 0 326 UNP P10584 MDH_THETH 1 327 DBREF 2CVQ B 0 326 UNP P10584 MDH_THETH 1 327 SEQRES 1 A 327 MET LYS ALA PRO VAL ARG VAL ALA VAL THR GLY ALA ALA SEQRES 2 A 327 GLY GLN ILE GLY TYR SER LEU LEU PHE ARG ILE ALA ALA SEQRES 3 A 327 GLY GLU MET LEU GLY LYS ASP GLN PRO VAL ILE LEU GLN SEQRES 4 A 327 LEU LEU GLU ILE PRO GLN ALA MET LYS ALA LEU GLU GLY SEQRES 5 A 327 VAL VAL MET GLU LEU GLU ASP CYS ALA PHE PRO LEU LEU SEQRES 6 A 327 ALA GLY LEU GLU ALA THR ASP ASP PRO LYS VAL ALA PHE SEQRES 7 A 327 LYS ASP ALA ASP TYR ALA LEU LEU VAL GLY ALA ALA PRO SEQRES 8 A 327 ARG LYS ALA GLY MET GLU ARG ARG ASP LEU LEU GLN VAL SEQRES 9 A 327 ASN GLY LYS ILE PHE THR GLU GLN GLY ARG ALA LEU ALA SEQRES 10 A 327 GLU VAL ALA LYS LYS ASP VAL LYS VAL LEU VAL VAL GLY SEQRES 11 A 327 ASN PRO ALA ASN THR ASN ALA LEU ILE ALA TYR LYS ASN SEQRES 12 A 327 ALA PRO GLY LEU ASN PRO ARG ASN PHE THR ALA MET THR SEQRES 13 A 327 ARG LEU ASP HIS ASN ARG ALA LYS ALA GLN LEU ALA LYS SEQRES 14 A 327 LYS THR GLY THR GLY VAL ASP ARG ILE ARG ARG MET THR SEQRES 15 A 327 VAL TRP GLY ASN HIS SER SER THR MET PHE PRO ASP LEU SEQRES 16 A 327 PHE HIS ALA GLU VAL ASP GLY ARG PRO ALA LEU GLU LEU SEQRES 17 A 327 VAL ASP MET GLU TRP TYR GLU LYS VAL PHE ILE PRO THR SEQRES 18 A 327 VAL ALA GLN ARG GLY ALA ALA ILE ILE GLN ALA ARG GLY SEQRES 19 A 327 ALA SER SER ALA ALA SER ALA ALA ASN ALA ALA ILE GLU SEQRES 20 A 327 HIS ILE ARG ASP TRP ALA LEU GLY THR PRO GLU GLY ASP SEQRES 21 A 327 TRP VAL SER MET ALA VAL PRO SER GLN GLY GLU TYR GLY SEQRES 22 A 327 ILE PRO GLU GLY ILE VAL TYR SER PHE PRO VAL THR ALA SEQRES 23 A 327 LYS ASP GLY ALA TYR ARG VAL VAL GLU GLY LEU GLU ILE SEQRES 24 A 327 ASN GLU PHE ALA ARG LYS ARG MET GLU ILE THR ALA GLN SEQRES 25 A 327 GLU LEU LEU ASP GLU MET GLU GLN VAL LYS ALA LEU GLY SEQRES 26 A 327 LEU ILE SEQRES 1 B 327 MET LYS ALA PRO VAL ARG VAL ALA VAL THR GLY ALA ALA SEQRES 2 B 327 GLY GLN ILE GLY TYR SER LEU LEU PHE ARG ILE ALA ALA SEQRES 3 B 327 GLY GLU MET LEU GLY LYS ASP GLN PRO VAL ILE LEU GLN SEQRES 4 B 327 LEU LEU GLU ILE PRO GLN ALA MET LYS ALA LEU GLU GLY SEQRES 5 B 327 VAL VAL MET GLU LEU GLU ASP CYS ALA PHE PRO LEU LEU SEQRES 6 B 327 ALA GLY LEU GLU ALA THR ASP ASP PRO LYS VAL ALA PHE SEQRES 7 B 327 LYS ASP ALA ASP TYR ALA LEU LEU VAL GLY ALA ALA PRO SEQRES 8 B 327 ARG LYS ALA GLY MET GLU ARG ARG ASP LEU LEU GLN VAL SEQRES 9 B 327 ASN GLY LYS ILE PHE THR GLU GLN GLY ARG ALA LEU ALA SEQRES 10 B 327 GLU VAL ALA LYS LYS ASP VAL LYS VAL LEU VAL VAL GLY SEQRES 11 B 327 ASN PRO ALA ASN THR ASN ALA LEU ILE ALA TYR LYS ASN SEQRES 12 B 327 ALA PRO GLY LEU ASN PRO ARG ASN PHE THR ALA MET THR SEQRES 13 B 327 ARG LEU ASP HIS ASN ARG ALA LYS ALA GLN LEU ALA LYS SEQRES 14 B 327 LYS THR GLY THR GLY VAL ASP ARG ILE ARG ARG MET THR SEQRES 15 B 327 VAL TRP GLY ASN HIS SER SER THR MET PHE PRO ASP LEU SEQRES 16 B 327 PHE HIS ALA GLU VAL ASP GLY ARG PRO ALA LEU GLU LEU SEQRES 17 B 327 VAL ASP MET GLU TRP TYR GLU LYS VAL PHE ILE PRO THR SEQRES 18 B 327 VAL ALA GLN ARG GLY ALA ALA ILE ILE GLN ALA ARG GLY SEQRES 19 B 327 ALA SER SER ALA ALA SER ALA ALA ASN ALA ALA ILE GLU SEQRES 20 B 327 HIS ILE ARG ASP TRP ALA LEU GLY THR PRO GLU GLY ASP SEQRES 21 B 327 TRP VAL SER MET ALA VAL PRO SER GLN GLY GLU TYR GLY SEQRES 22 B 327 ILE PRO GLU GLY ILE VAL TYR SER PHE PRO VAL THR ALA SEQRES 23 B 327 LYS ASP GLY ALA TYR ARG VAL VAL GLU GLY LEU GLU ILE SEQRES 24 B 327 ASN GLU PHE ALA ARG LYS ARG MET GLU ILE THR ALA GLN SEQRES 25 B 327 GLU LEU LEU ASP GLU MET GLU GLN VAL LYS ALA LEU GLY SEQRES 26 B 327 LEU ILE HET NDP A 334 39 HET TRS A4617 8 HET TRS A4619 8 HET NDP B1334 39 HET TRS B4621 8 HET TRS B4623 8 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 TRS 4(C4 H12 N O3 1+) FORMUL 9 HOH *331(H2 O) HELIX 1 1 GLY A 13 ALA A 25 1 13 HELIX 2 2 ILE A 42 GLN A 44 5 3 HELIX 3 3 ALA A 45 ASP A 58 1 14 HELIX 4 4 ASP A 72 PHE A 77 1 6 HELIX 5 5 GLU A 96 ALA A 119 1 24 HELIX 6 6 PRO A 131 ASN A 142 1 12 HELIX 7 7 ASN A 147 ARG A 149 5 3 HELIX 8 8 THR A 155 GLY A 171 1 17 HELIX 9 9 GLY A 173 ASP A 175 5 3 HELIX 10 10 LEU A 209 LEU A 211 5 3 HELIX 11 11 ASP A 214 VAL A 221 1 8 HELIX 12 12 VAL A 221 GLY A 238 1 18 HELIX 13 13 SER A 241 LEU A 258 1 18 HELIX 14 14 GLY A 274 ILE A 279 5 5 HELIX 15 15 ASN A 305 LEU A 329 1 25 HELIX 16 16 GLY B 13 ALA B 25 1 13 HELIX 17 17 ILE B 42 GLN B 44 5 3 HELIX 18 18 ALA B 45 ASP B 58 1 14 HELIX 19 19 ASP B 72 PHE B 77 1 6 HELIX 20 20 GLU B 96 ALA B 119 1 24 HELIX 21 21 PRO B 131 ASN B 142 1 12 HELIX 22 22 ASN B 147 ARG B 149 5 3 HELIX 23 23 THR B 155 GLY B 171 1 17 HELIX 24 24 GLY B 173 ASP B 175 5 3 HELIX 25 25 LEU B 209 LEU B 211 5 3 HELIX 26 26 ASP B 214 VAL B 221 1 8 HELIX 27 27 VAL B 221 GLY B 238 1 18 HELIX 28 28 SER B 241 GLY B 259 1 19 HELIX 29 29 GLY B 274 ILE B 279 5 5 HELIX 30 30 ASN B 305 LEU B 329 1 25 SHEET 1 A 6 LEU A 64 THR A 70 0 SHEET 2 A 6 VAL A 35 LEU A 40 1 N LEU A 39 O GLU A 68 SHEET 3 A 6 VAL A 4 VAL A 8 1 N VAL A 6 O ILE A 36 SHEET 4 A 6 TYR A 82 LEU A 85 1 O LEU A 84 N ALA A 7 SHEET 5 A 6 LYS A 124 VAL A 127 1 O LEU A 126 N LEU A 85 SHEET 6 A 6 PHE A 151 ALA A 153 1 O THR A 152 N VAL A 127 SHEET 1 B 3 ILE A 177 ARG A 178 0 SHEET 2 B 3 GLU A 198 VAL A 199 -1 O GLU A 198 N ARG A 178 SHEET 3 B 3 ARG A 206 PRO A 207 -1 O ARG A 206 N VAL A 199 SHEET 1 C 2 THR A 181 TRP A 183 0 SHEET 2 C 2 PHE A 191 ASP A 193 -1 O ASP A 193 N THR A 181 SHEET 1 D 3 VAL A 266 PRO A 271 0 SHEET 2 D 3 VAL A 284 LYS A 292 -1 O VAL A 289 N VAL A 266 SHEET 3 D 3 ALA A 295 VAL A 298 -1 O ALA A 295 N LYS A 292 SHEET 1 E 6 LEU B 64 THR B 70 0 SHEET 2 E 6 VAL B 35 LEU B 40 1 N LEU B 39 O GLU B 68 SHEET 3 E 6 VAL B 4 VAL B 8 1 N VAL B 6 O ILE B 36 SHEET 4 E 6 TYR B 82 LEU B 85 1 O LEU B 84 N ALA B 7 SHEET 5 E 6 LYS B 124 VAL B 127 1 O LEU B 126 N LEU B 85 SHEET 6 E 6 PHE B 151 ALA B 153 1 O THR B 152 N VAL B 127 SHEET 1 F 3 ILE B 177 ARG B 178 0 SHEET 2 F 3 GLU B 198 VAL B 199 -1 O GLU B 198 N ARG B 178 SHEET 3 F 3 ARG B 206 PRO B 207 -1 O ARG B 206 N VAL B 199 SHEET 1 G 2 THR B 181 TRP B 183 0 SHEET 2 G 2 PHE B 191 ASP B 193 -1 O ASP B 193 N THR B 181 SHEET 1 H 3 VAL B 266 PRO B 271 0 SHEET 2 H 3 VAL B 284 LYS B 292 -1 O VAL B 289 N VAL B 266 SHEET 3 H 3 ALA B 295 VAL B 298 -1 O ALA B 295 N LYS B 292 CISPEP 1 ASN A 130 PRO A 131 0 -0.35 CISPEP 2 ASN B 130 PRO B 131 0 -0.23 SITE 1 AC1 19 GLY A 10 GLY A 13 GLN A 14 ILE A 15 SITE 2 AC1 19 GLU A 41 ILE A 42 ALA A 45 VAL A 86 SITE 3 AC1 19 ALA A 88 VAL A 128 GLY A 129 ASN A 130 SITE 4 AC1 19 LEU A 157 SER A 240 SER A 241 ALA A 245 SITE 5 AC1 19 TRS A4617 TRS A4619 LYS B 220 SITE 1 AC2 19 LYS A 220 GLY B 13 GLN B 14 ILE B 15 SITE 2 AC2 19 GLU B 41 ILE B 42 ALA B 45 VAL B 86 SITE 3 AC2 19 ALA B 88 VAL B 128 GLY B 129 ASN B 130 SITE 4 AC2 19 LEU B 157 SER B 240 SER B 241 ALA B 245 SITE 5 AC2 19 TRS B4621 TRS B4623 HOH B4650 SITE 1 AC3 6 GLY A 230 NDP A 334 TRS A4619 HOH A4623 SITE 2 AC3 6 HOH A4628 HOH A4662 SITE 1 AC4 11 ASN A 130 LEU A 157 ASP A 158 ARG A 161 SITE 2 AC4 11 HIS A 186 NDP A 334 TRS A4617 HOH A4628 SITE 3 AC4 11 HOH A4645 HOH A4673 HOH A4731 SITE 1 AC5 8 ASN B 130 GLY B 230 SER B 240 NDP B1334 SITE 2 AC5 8 TRS B4623 HOH B4631 HOH B4636 HOH B4783 SITE 1 AC6 10 ASN B 130 LEU B 157 ASP B 158 HIS B 186 SITE 2 AC6 10 NDP B1334 TRS B4621 HOH B4629 HOH B4631 SITE 3 AC6 10 HOH B4669 HOH B4715 CRYST1 70.290 85.160 118.070 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014227 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008470 0.00000 MASTER 351 0 6 30 28 0 20 6 0 0 0 52 END