HEADER TRANSPORT PROTEIN 24-MAY-05 2CTE TITLE SOLUTION STRUCTURE OF THE 1ST KH TYPE I DOMAIN FROM HUMAN TITLE 2 VIGILIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIGILIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KH DOMAIN; COMPND 5 SYNONYM: HIGH DENSITY LIPOPROTEIN-BINDING PROTEIN, HDL- COMPND 6 BINDING PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDLBP; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050131-12; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS K HOMOLOGY TYPE I DOMAIN, RNA-BINDING, CELL STEROL KEYWDS 2 METABOLISM, BETA-ALPHA-ALPHA-BETA-BETA-ALPHA STRUCTURE, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 4 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2CTE 1 VERSN REVDAT 1 24-NOV-05 2CTE 0 JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 1ST KH TYPE I DOMAIN JRNL TITL 2 FROM HUMAN VIGILIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CTE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB024601. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.05MM KH DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 43.80 39.07 REMARK 500 1 VAL A 10 114.26 -35.91 REMARK 500 1 PRO A 58 3.38 -69.73 REMARK 500 1 ARG A 88 171.03 -58.40 REMARK 500 1 SER A 89 -49.30 -130.85 REMARK 500 1 PRO A 91 95.96 -69.72 REMARK 500 1 SER A 92 101.47 -44.42 REMARK 500 2 ASP A 8 45.57 -90.16 REMARK 500 2 PRO A 58 1.81 -69.81 REMARK 500 3 PRO A 58 3.12 -69.68 REMARK 500 3 SER A 92 137.89 -35.50 REMARK 500 4 LYS A 49 77.15 -113.10 REMARK 500 4 SER A 92 -54.85 -126.84 REMARK 500 5 GLN A 14 79.77 -116.10 REMARK 500 5 PRO A 58 3.20 -69.72 REMARK 500 5 LYS A 68 -36.66 -39.41 REMARK 500 5 PRO A 91 93.64 -69.76 REMARK 500 6 PRO A 58 2.90 -69.69 REMARK 500 6 LYS A 68 -30.67 -36.45 REMARK 500 7 SER A 2 50.45 34.52 REMARK 500 7 VAL A 10 47.39 -89.53 REMARK 500 7 PRO A 58 0.35 -69.72 REMARK 500 7 PRO A 91 93.18 -69.69 REMARK 500 7 SER A 92 41.23 39.14 REMARK 500 8 SER A 5 115.86 -37.19 REMARK 500 8 ALA A 11 112.84 -171.75 REMARK 500 8 ARG A 12 174.65 -51.82 REMARK 500 8 GLU A 37 -44.26 -130.45 REMARK 500 9 GLU A 37 -36.48 -132.88 REMARK 500 9 ARG A 88 129.24 -37.21 REMARK 500 9 SER A 89 131.62 -36.06 REMARK 500 9 SER A 92 158.39 -40.36 REMARK 500 10 ILE A 9 129.74 -38.26 REMARK 500 10 VAL A 10 139.74 -34.15 REMARK 500 10 THR A 15 174.46 -51.57 REMARK 500 10 PRO A 58 2.81 -69.76 REMARK 500 10 LYS A 68 -30.46 -37.09 REMARK 500 10 LYS A 87 -70.02 -98.97 REMARK 500 10 ARG A 88 41.18 35.40 REMARK 500 11 THR A 15 176.72 -48.89 REMARK 500 11 ARG A 54 158.84 -49.11 REMARK 500 11 ARG A 88 46.36 -91.29 REMARK 500 12 SER A 5 83.78 -65.42 REMARK 500 12 GLN A 14 75.82 -107.69 REMARK 500 12 PRO A 58 2.99 -69.75 REMARK 500 12 SER A 92 165.50 -45.45 REMARK 500 13 SER A 3 107.54 -163.93 REMARK 500 13 GLU A 37 -51.07 -122.01 REMARK 500 13 LYS A 38 -39.26 -35.33 REMARK 500 13 LYS A 68 -35.58 -38.46 REMARK 500 13 LYS A 87 30.67 -95.35 REMARK 500 14 SER A 2 118.65 -174.39 REMARK 500 14 ALA A 11 44.44 -103.96 REMARK 500 14 THR A 15 177.78 -48.70 REMARK 500 14 ARG A 54 158.04 -49.87 REMARK 500 14 PRO A 58 2.30 -69.77 REMARK 500 15 ARG A 54 155.66 -36.83 REMARK 500 15 PRO A 58 3.25 -69.76 REMARK 500 15 LYS A 68 -37.34 -38.78 REMARK 500 15 ARG A 88 107.05 -42.71 REMARK 500 15 SER A 92 88.40 -54.66 REMARK 500 16 ARG A 54 156.72 -43.64 REMARK 500 16 PRO A 58 3.04 -69.76 REMARK 500 16 LYS A 87 30.23 -94.74 REMARK 500 16 SER A 89 -66.24 -131.71 REMARK 500 17 SER A 2 98.84 -47.70 REMARK 500 17 LEU A 13 164.80 -48.25 REMARK 500 17 PRO A 58 3.34 -69.81 REMARK 500 17 LYS A 68 -34.15 -38.06 REMARK 500 17 SER A 92 43.34 -81.40 REMARK 500 18 GLN A 16 152.07 -36.29 REMARK 500 18 LYS A 38 -33.64 -35.96 REMARK 500 18 PRO A 58 3.11 -69.83 REMARK 500 18 LYS A 87 30.65 -91.38 REMARK 500 19 GLN A 16 153.46 -48.99 REMARK 500 20 PRO A 58 1.04 -69.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000906.5 RELATED DB: TARGETDB DBREF 2CTE A 8 88 UNP Q00341 VIGLN_HUMAN 142 222 SEQADV 2CTE GLY A 1 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE SER A 2 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE SER A 3 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE GLY A 4 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE SER A 5 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE SER A 6 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE GLY A 7 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE SER A 89 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE GLY A 90 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE PRO A 91 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE SER A 92 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE SER A 93 UNP Q00341 CLONING ARTIFACT SEQADV 2CTE GLY A 94 UNP Q00341 CLONING ARTIFACT SEQRES 1 A 94 GLY SER SER GLY SER SER GLY ASP ILE VAL ALA ARG LEU SEQRES 2 A 94 GLN THR GLN ALA SER ALA THR VAL ALA ILE PRO LYS GLU SEQRES 3 A 94 HIS HIS ARG PHE VAL ILE GLY LYS ASN GLY GLU LYS LEU SEQRES 4 A 94 GLN ASP LEU GLU LEU LYS THR ALA THR LYS ILE GLN ILE SEQRES 5 A 94 PRO ARG PRO ASP ASP PRO SER ASN GLN ILE LYS ILE THR SEQRES 6 A 94 GLY THR LYS GLU GLY ILE GLU LYS ALA ARG HIS GLU VAL SEQRES 7 A 94 LEU LEU ILE SER ALA GLU GLN ASP LYS ARG SER GLY PRO SEQRES 8 A 94 SER SER GLY HELIX 1 1 HIS A 27 GLY A 33 1 7 HELIX 2 2 GLU A 37 THR A 46 1 10 HELIX 3 3 THR A 67 LYS A 87 1 21 SHEET 1 A 3 ALA A 17 ALA A 22 0 SHEET 2 A 3 GLN A 61 GLY A 66 -1 O ILE A 64 N ALA A 19 SHEET 3 A 3 LYS A 49 GLN A 51 -1 O GLN A 51 N THR A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 151 0 0 3 3 0 0 6 0 0 0 8 END