HEADER METAL BINDING PROTEIN 23-MAY-05 2CT7 TITLE SOLUTION STRUCTURE OF THE IBR DOMAIN OF THE RING FINGER TITLE 2 PROTEIN 31 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING FINGER PROTEIN 31; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IBR DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF31; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040816-13; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RING FINGER PROTEIN 31, IBR, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.MIYAMOTO,S.KOSHIBA,T.TOMIZAWA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2CT7 1 VERSN REVDAT 1 23-NOV-05 2CT7 0 JRNL AUTH K.MIYAMOTO,S.KOSHIBA,T.TOMIZAWA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE IBR DOMAIN OF THE RING JRNL TITL 2 FINGER PROTEIN 31 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CT7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB024596. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 220 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.55MM IBR DOMAIN U-13C,15N; REMARK 210 20MM D-TRIS-HCL; 200MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 0.01MM REMARK 210 ZNCL2; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.925, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 114.57 -167.91 REMARK 500 1 HIS A 11 -50.35 -131.55 REMARK 500 1 PRO A 23 -90.67 -69.76 REMARK 500 1 CYS A 28 177.79 -58.76 REMARK 500 1 GLN A 30 -55.34 -122.70 REMARK 500 1 PHE A 33 -70.18 -51.48 REMARK 500 1 GLU A 38 43.48 29.52 REMARK 500 1 GLU A 40 48.25 -97.62 REMARK 500 1 GLU A 43 62.31 -119.08 REMARK 500 1 PRO A 47 1.84 -69.82 REMARK 500 1 GLN A 48 -60.72 -123.04 REMARK 500 1 ARG A 56 -71.98 -104.48 REMARK 500 1 GLN A 60 108.49 -53.05 REMARK 500 1 TRP A 61 161.81 -49.31 REMARK 500 1 SER A 81 42.10 -81.10 REMARK 500 2 LYS A 24 109.59 -176.54 REMARK 500 2 GLN A 30 -60.46 -129.10 REMARK 500 2 SER A 32 51.04 35.15 REMARK 500 2 TYR A 37 -32.88 -133.06 REMARK 500 2 GLU A 38 48.64 29.13 REMARK 500 2 ARG A 56 -70.42 -101.17 REMARK 500 2 SER A 84 148.51 -172.76 REMARK 500 3 SER A 2 131.75 -170.14 REMARK 500 3 PHE A 10 155.11 -40.79 REMARK 500 3 LYS A 24 107.74 -176.67 REMARK 500 3 GLN A 30 -62.17 -98.69 REMARK 500 3 GLU A 38 54.84 38.79 REMARK 500 3 PRO A 47 0.76 -69.73 REMARK 500 3 GLN A 48 -52.03 -122.08 REMARK 500 3 ARG A 56 -69.09 -97.57 REMARK 500 4 HIS A 11 41.69 -82.72 REMARK 500 4 LEU A 14 -60.18 -100.24 REMARK 500 4 PRO A 23 -88.64 -69.77 REMARK 500 4 CYS A 28 -179.79 -57.87 REMARK 500 4 GLU A 38 50.78 35.44 REMARK 500 4 ARG A 56 -71.75 -99.41 REMARK 500 5 PHE A 10 -70.81 -44.82 REMARK 500 5 LYS A 12 149.55 -33.41 REMARK 500 5 LEU A 14 144.08 -33.76 REMARK 500 5 LYS A 24 108.52 -176.55 REMARK 500 5 CYS A 28 -179.11 -59.10 REMARK 500 5 GLN A 30 -55.74 -125.82 REMARK 500 5 SER A 32 54.19 35.83 REMARK 500 5 GLU A 38 49.84 30.34 REMARK 500 5 GLU A 40 40.36 -82.69 REMARK 500 5 ARG A 56 -72.19 -97.95 REMARK 500 5 SER A 81 -70.73 -55.26 REMARK 500 6 PHE A 10 147.06 -37.66 REMARK 500 6 PRO A 23 -90.69 -69.74 REMARK 500 6 PHE A 33 -71.41 -51.98 REMARK 500 6 GLU A 38 55.02 27.72 REMARK 500 6 ARG A 56 -71.01 -102.77 REMARK 500 7 HIS A 11 -27.15 -37.99 REMARK 500 7 LYS A 12 105.14 -172.31 REMARK 500 7 PRO A 23 -90.97 -69.75 REMARK 500 7 GLN A 30 -58.80 -133.97 REMARK 500 7 SER A 32 37.56 73.29 REMARK 500 7 PHE A 35 -175.07 -175.71 REMARK 500 7 TYR A 37 -40.88 -135.01 REMARK 500 7 GLN A 41 175.09 -49.06 REMARK 500 7 ARG A 56 -70.59 -85.42 REMARK 500 7 SER A 84 100.31 -37.41 REMARK 500 8 ALA A 8 112.51 -164.08 REMARK 500 8 LYS A 12 46.32 -78.56 REMARK 500 8 THR A 15 45.23 -78.71 REMARK 500 8 LYS A 24 108.47 -173.72 REMARK 500 8 CYS A 28 2.03 -67.34 REMARK 500 8 GLN A 30 -46.66 -134.94 REMARK 500 8 TYR A 37 -39.50 -130.90 REMARK 500 8 GLU A 38 45.69 34.62 REMARK 500 8 GLU A 40 45.53 -102.86 REMARK 500 8 ARG A 56 -70.11 -85.97 REMARK 500 8 LYS A 58 45.41 72.33 REMARK 500 9 LYS A 12 147.43 -35.27 REMARK 500 9 LYS A 13 40.84 -81.95 REMARK 500 9 LEU A 19 40.28 -82.26 REMARK 500 9 ARG A 21 39.15 -85.20 REMARK 500 9 LYS A 24 112.85 -176.16 REMARK 500 9 GLN A 30 -64.10 -104.62 REMARK 500 9 SER A 32 54.92 71.96 REMARK 500 9 GLU A 38 54.46 27.35 REMARK 500 9 PRO A 47 0.06 -69.73 REMARK 500 9 GLN A 48 -56.97 -120.52 REMARK 500 9 ARG A 56 -72.95 -102.93 REMARK 500 10 ALA A 8 138.80 -172.38 REMARK 500 10 LEU A 9 127.99 -36.03 REMARK 500 10 PHE A 10 165.17 -48.55 REMARK 500 10 LYS A 12 106.92 -39.53 REMARK 500 10 ARG A 21 41.25 -102.63 REMARK 500 10 PRO A 23 -90.80 -69.81 REMARK 500 10 GLN A 30 -67.34 -122.18 REMARK 500 10 GLU A 38 45.28 38.26 REMARK 500 10 ARG A 56 -70.97 -98.31 REMARK 500 10 PRO A 83 2.37 -69.69 REMARK 500 11 SER A 6 118.23 -163.82 REMARK 500 11 LYS A 12 103.36 -54.81 REMARK 500 11 THR A 15 46.99 -83.25 REMARK 500 11 LYS A 24 108.04 -177.31 REMARK 500 11 GLN A 30 -52.89 -131.77 REMARK 500 11 SER A 32 54.66 34.56 REMARK 500 11 GLU A 38 44.89 32.64 REMARK 500 11 GLN A 48 -42.43 -131.18 REMARK 500 11 ARG A 56 -72.68 -92.81 REMARK 500 12 PHE A 10 41.86 -81.31 REMARK 500 12 HIS A 11 39.97 38.89 REMARK 500 12 LYS A 12 120.65 -172.82 REMARK 500 12 THR A 15 84.15 -62.69 REMARK 500 12 VAL A 18 -31.55 -38.33 REMARK 500 12 LEU A 19 50.68 29.54 REMARK 500 12 PRO A 23 -84.55 -69.76 REMARK 500 12 GLN A 30 -65.75 -122.87 REMARK 500 12 GLU A 38 42.64 37.74 REMARK 500 12 LEU A 42 34.33 -81.16 REMARK 500 12 ARG A 56 -72.98 -89.94 REMARK 500 12 SER A 84 174.25 -57.94 REMARK 500 13 PHE A 10 -174.52 -51.14 REMARK 500 13 HIS A 11 153.90 -35.27 REMARK 500 13 LYS A 12 112.68 -34.44 REMARK 500 13 LEU A 19 35.56 -92.15 REMARK 500 13 LYS A 24 105.80 -175.15 REMARK 500 13 ALA A 29 42.02 -77.40 REMARK 500 13 GLN A 30 -34.28 -135.04 REMARK 500 13 GLU A 38 47.37 38.45 REMARK 500 13 ARG A 56 -72.95 -93.40 REMARK 500 14 ALA A 8 41.93 -80.88 REMARK 500 14 PHE A 10 45.39 -85.64 REMARK 500 14 HIS A 11 54.56 33.49 REMARK 500 14 LEU A 19 79.94 -66.70 REMARK 500 14 PRO A 23 -90.49 -69.79 REMARK 500 14 GLN A 30 -63.83 -101.88 REMARK 500 14 PHE A 33 -71.04 -45.35 REMARK 500 14 GLU A 38 46.86 33.33 REMARK 500 14 PRO A 47 4.47 -69.83 REMARK 500 14 HIS A 50 52.28 28.73 REMARK 500 14 ARG A 56 -66.45 -98.64 REMARK 500 14 GLN A 60 108.34 -54.71 REMARK 500 14 PRO A 83 89.22 -69.71 REMARK 500 15 LYS A 12 126.31 -32.57 REMARK 500 15 LYS A 13 127.21 -35.26 REMARK 500 15 LEU A 14 145.46 -34.73 REMARK 500 15 THR A 15 128.74 -36.42 REMARK 500 15 GLU A 16 -61.63 -105.94 REMARK 500 15 LEU A 19 78.10 -118.25 REMARK 500 15 LYS A 24 104.98 -175.62 REMARK 500 15 PRO A 47 8.99 -69.72 REMARK 500 15 GLN A 48 -53.16 -131.71 REMARK 500 15 ARG A 56 -73.74 -89.07 REMARK 500 15 PRO A 83 82.73 -69.81 REMARK 500 16 PHE A 10 137.24 -33.39 REMARK 500 16 PRO A 23 -90.87 -69.76 REMARK 500 16 ALA A 29 33.28 -81.08 REMARK 500 16 GLN A 30 -65.22 -128.26 REMARK 500 16 GLU A 38 44.15 35.73 REMARK 500 16 PRO A 47 5.32 -69.74 REMARK 500 16 HIS A 50 54.14 29.94 REMARK 500 16 ARG A 56 -68.01 -91.90 REMARK 500 16 PRO A 83 94.68 -69.77 REMARK 500 16 SER A 85 140.50 -174.33 REMARK 500 17 LYS A 12 148.19 -32.73 REMARK 500 17 VAL A 18 -70.27 -108.93 REMARK 500 17 LEU A 19 34.52 33.93 REMARK 500 17 PRO A 23 -91.02 -69.75 REMARK 500 17 SER A 32 54.88 30.72 REMARK 500 17 GLU A 38 47.81 39.54 REMARK 500 17 GLU A 40 43.10 -109.15 REMARK 500 17 PRO A 47 8.79 -69.82 REMARK 500 17 GLN A 48 -52.93 -126.57 REMARK 500 17 ARG A 56 -72.90 -85.67 REMARK 500 18 SER A 5 117.18 -166.23 REMARK 500 18 PHE A 10 128.20 -34.77 REMARK 500 18 THR A 15 45.35 27.73 REMARK 500 18 LEU A 19 42.21 -104.81 REMARK 500 18 PRO A 23 -91.17 -69.75 REMARK 500 18 GLU A 38 53.44 29.70 REMARK 500 18 GLU A 40 45.24 39.85 REMARK 500 18 LEU A 42 30.42 -95.82 REMARK 500 18 PRO A 47 6.27 -69.81 REMARK 500 18 GLN A 48 -67.36 -121.78 REMARK 500 18 ARG A 56 -69.76 -92.31 REMARK 500 18 GLN A 60 108.19 -57.86 REMARK 500 18 SER A 84 109.94 -55.09 REMARK 500 19 PHE A 10 149.60 -33.71 REMARK 500 19 LYS A 12 139.92 -174.84 REMARK 500 19 PRO A 23 -89.71 -69.84 REMARK 500 19 ALA A 29 -9.09 -59.54 REMARK 500 19 PHE A 33 -71.88 -51.57 REMARK 500 19 GLU A 38 39.89 30.05 REMARK 500 19 ARG A 56 -72.96 -87.15 REMARK 500 20 SER A 5 115.39 -175.00 REMARK 500 20 ALA A 8 172.97 -48.54 REMARK 500 20 LYS A 12 38.82 -88.52 REMARK 500 20 LYS A 13 44.42 38.19 REMARK 500 20 LYS A 24 105.00 -175.48 REMARK 500 20 ALA A 29 42.02 -75.53 REMARK 500 20 GLN A 30 -35.03 -134.63 REMARK 500 20 TYR A 37 -36.59 -132.67 REMARK 500 20 GLU A 38 41.57 39.66 REMARK 500 20 GLU A 40 43.72 -104.27 REMARK 500 20 ARG A 56 -71.77 -99.63 REMARK 500 20 PRO A 83 87.31 -69.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 28 SG REMARK 620 2 CYS A 31 SG 103.4 REMARK 620 3 CYS A 46 SG 93.4 112.5 REMARK 620 4 CYS A 49 SG 118.0 113.1 114.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 54 SG REMARK 620 2 CYS A 57 SG 97.8 REMARK 620 3 HIS A 65 NE2 114.4 109.4 REMARK 620 4 CYS A 70 SG 116.5 96.0 118.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012616.1 RELATED DB: TARGETDB DBREF 2CT7 A 8 80 UNP Q96EP0 RNF31_HUMAN 779 851 SEQADV 2CT7 GLY A 1 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 SER A 2 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 SER A 3 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 GLY A 4 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 SER A 5 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 SER A 6 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 GLY A 7 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 SER A 81 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 GLY A 82 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 PRO A 83 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 SER A 84 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 SER A 85 UNP Q96EP0 CLONING ARTIFACT SEQADV 2CT7 GLY A 86 UNP Q96EP0 CLONING ARTIFACT SEQRES 1 A 86 GLY SER SER GLY SER SER GLY ALA LEU PHE HIS LYS LYS SEQRES 2 A 86 LEU THR GLU GLY VAL LEU MET ARG ASP PRO LYS PHE LEU SEQRES 3 A 86 TRP CYS ALA GLN CYS SER PHE GLY PHE ILE TYR GLU ARG SEQRES 4 A 86 GLU GLN LEU GLU ALA THR CYS PRO GLN CYS HIS GLN THR SEQRES 5 A 86 PHE CYS VAL ARG CYS LYS ARG GLN TRP GLU GLU GLN HIS SEQRES 6 A 86 ARG GLY ARG SER CYS GLU ASP PHE GLN ASN TRP LYS ARG SEQRES 7 A 86 MET ASN SER GLY PRO SER SER GLY HET ZN A 201 1 HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 GLU A 63 ARG A 66 1 4 HELIX 2 2 CYS A 70 ASN A 80 1 11 SHEET 1 A 2 PHE A 25 LEU A 26 0 SHEET 2 A 2 PHE A 35 ILE A 36 -1 O PHE A 35 N LEU A 26 SHEET 1 B 2 ALA A 44 THR A 45 0 SHEET 2 B 2 THR A 52 PHE A 53 -1 O PHE A 53 N ALA A 44 LINK ZN ZN A 201 SG CYS A 28 1555 1555 2.34 LINK ZN ZN A 201 SG CYS A 31 1555 1555 2.36 LINK ZN ZN A 201 SG CYS A 46 1555 1555 2.34 LINK ZN ZN A 201 SG CYS A 49 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 54 1555 1555 2.36 LINK ZN ZN A 401 SG CYS A 57 1555 1555 2.33 LINK ZN ZN A 401 NE2 HIS A 65 1555 1555 2.33 LINK ZN ZN A 401 SG CYS A 70 1555 1555 2.33 SITE 1 AC1 4 CYS A 28 CYS A 31 CYS A 46 CYS A 49 SITE 1 AC2 4 CYS A 54 CYS A 57 HIS A 65 CYS A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 303 0 2 2 4 0 2 6 0 0 0 7 END