HEADER TRANSCRIPTION 20-MAY-05 2CS9 TITLE HOMOLOGY MODELING OF A SIGMA FACTOR HAVING A HELIX-TURN- TITLE 2 HELIX MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR SIGE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SIGMA FACTOR BINDING TO PROMOTER DNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THIOBACILLUS NOVELLUS; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 STRAIN: DSMZ 506T KEYWDS RNA POLYMERASE-SIGMA FACTOR, HELIX-TURN-HELIX (HTH) MOTIF EXPDTA THEORETICAL MODEL AUTHOR A.BAGCHI,T.C.GHOSH REVDAT 2 20-JUN-06 2CS9 1 JRNL REVDAT 1 02-MAY-06 2CS9 0 JRNL AUTH A.BAGCHI,T.C.GHOSH JRNL TITL STRUCTURAL STUDY OF TWO PROTEINS SIGE AND ORF1 TO JRNL TITL 2 PREDICT THEIR ROLES IN THE BIOCHEMICAL OXIDATION JRNL TITL 3 OF SULFUR ANIONS VIA THE GLOBAL SULFUR OXIDATION JRNL TITL 4 OPERON (SOX). JRNL REF COMPUT.BIOL.CHEM. V. 30 227 2006 JRNL REFN NE ISSN 1476-9271 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INSIGHTII REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CS9 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-2005. REMARK 100 THE RCSB ID CODE IS RCSB024566. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: HOMOLOGY MODELING USING THE HOMOLOGY SERVICE OF REMARK 220 INSIGHTII REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 77 123.53 97.79 REMARK 500 VAL A 101 -84.31 61.62 REMARK 500 GLN A 103 -47.83 88.04 REMARK 500 ILE A 111 -82.80 34.39 REMARK 500 PHE A 124 167.15 73.94 REMARK 500 LEU A 149 -108.54 26.10 REMARK 500 SER A 150 -100.05 176.80 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 2 ALA A 3 145.03 REMARK 500 ALA A 8 LEU A 9 146.51 REMARK 500 ARG A 15 LEU A 16 142.03 REMARK 500 VAL A 54 ARG A 55 148.36 REMARK 500 ARG A 71 ARG A 72 140.70 REMARK 500 GLU A 82 PRO A 83 139.25 REMARK 500 GLU A 89 HIS A 90 145.27 REMARK 500 HIS A 112 ARG A 113 139.33 REMARK 500 MET A 141 SER A 142 142.62 REMARK 500 ARG A 143 LEU A 144 148.69 REMARK 500 ARG A 148 LEU A 149 118.46 REMARK 500 LEU A 161 PRO A 162 136.92 REMARK 500 ARG A 168 HIS A 169 -116.49 REMARK 500 GLY A 170 GLU A 171 123.29 REMARK 500 GLU A 171 LYS A 172 66.35 DBREF 2CS9 A 1 172 UNP Q9LA18 Q9LA18_THINO 1 172 SEQRES 1 A 172 MET ARG ALA ALA ILE GLU ALA ALA LEU LYS GLN ASP TRP SEQRES 2 A 172 ARG ARG LEU PHE SER TYR ALA LEU HIS LEU THR GLY SER SEQRES 3 A 172 ARG GLU ALA ALA SER ASP LEU LEU GLN SER CYS VAL VAL SEQRES 4 A 172 LYS ALA LEU SER SER ARG SER LEU PRO ALA ASP ILE VAL SEQRES 5 A 172 SER VAL ARG ALA TRP ILE PHE THR ILE LEU ARG ASN ALA SEQRES 6 A 172 TRP ILE ASP GLU PHE ARG ARG ASN ARG ALA ASP ALA GLU SEQRES 7 A 172 LEU THR ALA GLU PRO LEU ALA GLU PRO ILE GLU HIS TYR SEQRES 8 A 172 ASP ASP ARG VAL ILE ALA ALA ILE THR VAL ARG GLN ALA SEQRES 9 A 172 LEU GLU ARG ILE GLU PRO ILE HIS ARG GLU ILE ILE GLU SEQRES 10 A 172 LEU VAL ASP LEU ALA GLY PHE ARG TYR ALA GLU VAL ALA SEQRES 11 A 172 ALA ILE LEU GLY VAL PRO GLN GLY THR VAL MET SER ARG SEQRES 12 A 172 LEU SER ARG ALA ARG LEU SER LEU LEU ALA VAL ILE SER SEQRES 13 A 172 GLU GLY ASN VAL LEU PRO LEU SER THR ARG ARG ARG HIS SEQRES 14 A 172 GLY GLU LYS HELIX 1 1 LEU A 16 GLY A 25 1 10 HELIX 2 2 SER A 26 SER A 44 1 19 HELIX 3 3 SER A 53 ASP A 68 1 16 HELIX 4 4 THR A 80 ASP A 92 1 13 HELIX 5 5 PRO A 110 HIS A 112 5 3 HELIX 6 6 ARG A 113 VAL A 119 1 7 HELIX 7 7 ARG A 125 GLY A 134 1 10 HELIX 8 8 PRO A 136 ARG A 148 1 13 CISPEP 1 GLU A 78 LEU A 79 0 -9.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 68 0 0 8 0 0 0 6 0 0 0 14 END