HEADER HYDROALASE 20-MAY-05 2CS5 TITLE SOLUTION STRUCTURE OF PDZ DOMAIN OF PROTEIN TYROSINE TITLE 2 PHOSPHATASE, NON-RECEPTOR TYPE 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE, NON-RECEPTOR TYPE COMPND 3 4; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PDZ DOMAIN; COMPND 6 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE MEG1, PTPASE-MEG1, COMPND 7 MEG; COMPND 8 EC: 3.1.3.48; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN4; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041115-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, PTPASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 HYDROALASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2CS5 1 VERSN REVDAT 1 20-NOV-05 2CS5 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF PDZ DOMAIN OF PROTEIN JRNL TITL 2 TYROSINE PHOSPHATASE, NON-RECEPTOR TYPE 4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CS5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024562. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.83MM PDZ DOMAIN U-13C, 15N; REMARK 210 20MM TRISHCL, 100MM NACL, 1MM REMARK 210 DTT, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.901, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 14 160.09 -43.01 REMARK 500 1 LYS A 40 36.18 32.80 REMARK 500 1 PRO A 50 -169.47 -69.77 REMARK 500 1 PRO A 53 2.83 -69.76 REMARK 500 1 ASP A 65 101.34 -52.92 REMARK 500 1 ASN A 71 30.25 38.35 REMARK 500 1 SER A 95 98.74 -52.24 REMARK 500 1 GLU A 113 107.60 -168.32 REMARK 500 1 PRO A 116 -176.81 -69.75 REMARK 500 2 HIS A 13 29.89 46.71 REMARK 500 2 ASN A 15 -53.31 -127.98 REMARK 500 2 LYS A 40 53.40 34.86 REMARK 500 2 VAL A 45 102.97 -50.66 REMARK 500 2 PRO A 53 0.42 -69.72 REMARK 500 2 GLU A 63 158.00 -45.66 REMARK 500 2 ASP A 65 85.99 -55.19 REMARK 500 2 ASN A 71 26.11 48.58 REMARK 500 2 ASN A 105 79.68 -116.02 REMARK 500 2 GLU A 113 114.61 -170.57 REMARK 500 2 PRO A 116 -170.48 -69.79 REMARK 500 3 PRO A 23 89.14 -69.71 REMARK 500 3 ASP A 24 -71.21 -122.30 REMARK 500 3 LYS A 40 39.58 39.40 REMARK 500 3 PRO A 53 2.72 -69.73 REMARK 500 3 LEU A 61 94.61 -69.58 REMARK 500 3 ASP A 65 105.07 -51.98 REMARK 500 3 GLU A 92 78.44 -100.95 REMARK 500 3 VAL A 110 149.76 -34.58 REMARK 500 3 GLU A 113 108.49 -165.46 REMARK 500 4 ASP A 14 106.59 -38.16 REMARK 500 4 ASP A 24 -176.92 -52.45 REMARK 500 4 ASP A 65 90.93 -53.31 REMARK 500 4 ARG A 93 88.03 -56.09 REMARK 500 4 GLU A 97 172.01 -46.92 REMARK 500 4 TYR A 108 132.86 -34.62 REMARK 500 4 ASP A 109 145.31 -170.69 REMARK 500 4 SER A 117 43.87 38.73 REMARK 500 5 ASN A 8 111.62 -161.39 REMARK 500 5 ASP A 24 179.37 -49.84 REMARK 500 5 LYS A 40 41.43 35.30 REMARK 500 5 ASP A 65 102.65 -48.33 REMARK 500 5 SER A 95 -55.69 -124.29 REMARK 500 5 ASN A 105 75.99 -103.58 REMARK 500 5 ALA A 106 99.23 -41.04 REMARK 500 5 SER A 117 -50.22 -132.84 REMARK 500 6 HIS A 13 -51.51 -120.73 REMARK 500 6 ASP A 24 177.61 -54.34 REMARK 500 6 LYS A 40 32.04 39.21 REMARK 500 6 PRO A 53 1.03 -69.79 REMARK 500 6 ASP A 55 -61.62 -99.07 REMARK 500 6 LEU A 56 -18.76 -49.25 REMARK 500 6 ASP A 65 114.20 -38.31 REMARK 500 6 GLU A 92 40.63 -92.66 REMARK 500 6 ARG A 93 112.15 -160.61 REMARK 500 6 SER A 118 -58.85 -126.56 REMARK 500 7 ASP A 14 -63.44 -109.47 REMARK 500 7 ASP A 24 177.97 -50.89 REMARK 500 7 LYS A 40 41.72 34.41 REMARK 500 7 SER A 46 -62.56 -93.36 REMARK 500 7 PRO A 53 2.75 -69.78 REMARK 500 7 ASP A 65 106.46 -44.37 REMARK 500 7 GLU A 113 107.63 -172.96 REMARK 500 8 LYS A 40 29.71 42.50 REMARK 500 8 PRO A 53 2.45 -69.76 REMARK 500 8 ASP A 65 90.71 -51.99 REMARK 500 8 ASP A 74 88.65 -61.95 REMARK 500 8 GLU A 92 41.79 -96.02 REMARK 500 8 HIS A 94 99.49 -47.44 REMARK 500 8 SER A 95 100.63 -50.81 REMARK 500 9 ILE A 11 151.03 -42.65 REMARK 500 9 LYS A 40 31.85 35.31 REMARK 500 9 PRO A 53 2.88 -69.78 REMARK 500 9 ASP A 65 122.15 -38.09 REMARK 500 9 ASP A 81 -38.74 -38.36 REMARK 500 9 SER A 90 -38.48 -37.71 REMARK 500 9 GLU A 92 -36.65 -34.61 REMARK 500 9 SER A 95 89.93 -59.19 REMARK 500 9 VAL A 107 148.25 -174.95 REMARK 500 9 PRO A 116 2.83 -69.73 REMARK 500 9 SER A 118 -61.31 -106.41 REMARK 500 10 ASN A 8 -50.75 -127.14 REMARK 500 10 ASP A 24 179.53 -58.02 REMARK 500 10 LYS A 40 31.79 37.72 REMARK 500 10 PRO A 53 1.66 -69.72 REMARK 500 10 ASP A 65 100.46 -47.39 REMARK 500 10 VAL A 83 -39.92 -38.81 REMARK 500 10 SER A 95 134.84 -172.06 REMARK 500 10 VAL A 107 -179.05 -68.39 REMARK 500 10 GLU A 113 106.31 -167.12 REMARK 500 10 SER A 118 -61.42 -90.52 REMARK 500 11 SER A 6 41.66 70.21 REMARK 500 11 PRO A 12 91.29 -69.83 REMARK 500 11 HIS A 13 108.21 -40.21 REMARK 500 11 ASP A 24 170.69 -47.97 REMARK 500 11 LYS A 40 43.16 35.37 REMARK 500 11 PRO A 53 2.95 -69.73 REMARK 500 11 ASP A 55 -63.84 -101.08 REMARK 500 11 ALA A 106 121.45 -35.69 REMARK 500 11 GLU A 113 113.14 -174.60 REMARK 500 12 HIS A 13 98.49 -47.71 REMARK 500 12 LYS A 40 31.21 37.86 REMARK 500 12 ALA A 89 -37.88 -38.85 REMARK 500 12 ARG A 93 174.86 -56.67 REMARK 500 13 ASP A 24 175.44 -51.98 REMARK 500 13 LYS A 40 36.98 36.01 REMARK 500 13 ASP A 55 -64.95 -96.75 REMARK 500 13 ASP A 65 91.94 -51.27 REMARK 500 13 SER A 90 -34.18 -38.49 REMARK 500 14 ASP A 14 45.95 -80.78 REMARK 500 14 ASP A 24 -177.84 -55.85 REMARK 500 14 LYS A 40 42.90 36.43 REMARK 500 14 PRO A 53 2.85 -69.71 REMARK 500 14 ASP A 55 -63.15 -102.13 REMARK 500 14 GLU A 92 46.46 -90.11 REMARK 500 14 HIS A 94 169.64 -46.72 REMARK 500 14 SER A 95 119.81 -35.54 REMARK 500 14 TYR A 108 50.52 -90.54 REMARK 500 14 GLU A 113 107.18 -170.45 REMARK 500 14 SER A 117 106.85 -40.02 REMARK 500 14 SER A 118 140.91 -36.19 REMARK 500 15 LYS A 40 50.36 35.22 REMARK 500 15 SER A 46 -60.94 -90.98 REMARK 500 15 PRO A 53 2.51 -69.72 REMARK 500 15 ASP A 65 99.74 -51.49 REMARK 500 15 ASN A 71 40.25 73.18 REMARK 500 15 SER A 90 -28.02 -38.19 REMARK 500 15 SER A 95 26.36 43.56 REMARK 500 15 GLU A 97 174.75 -47.37 REMARK 500 15 VAL A 107 58.43 -112.00 REMARK 500 15 GLU A 113 -57.70 -124.52 REMARK 500 16 LYS A 40 36.73 37.47 REMARK 500 16 ASP A 55 -63.03 -99.62 REMARK 500 16 GLU A 63 149.31 -34.14 REMARK 500 16 SER A 95 134.57 -35.49 REMARK 500 16 GLU A 97 145.20 -172.76 REMARK 500 16 GLU A 113 113.61 -169.19 REMARK 500 17 SER A 2 132.08 -170.85 REMARK 500 17 PRO A 50 -177.43 -69.72 REMARK 500 17 PRO A 53 2.20 -69.83 REMARK 500 17 ASP A 65 89.78 -56.95 REMARK 500 17 GLU A 113 44.55 -101.19 REMARK 500 18 ASN A 8 98.01 -52.97 REMARK 500 18 HIS A 13 41.50 -98.30 REMARK 500 18 ASN A 15 -60.90 -120.73 REMARK 500 18 ASP A 65 85.12 -67.12 REMARK 500 18 ASN A 105 74.42 -117.78 REMARK 500 18 GLU A 113 108.78 -164.42 REMARK 500 19 MET A 21 148.29 -172.30 REMARK 500 19 LYS A 40 32.45 35.00 REMARK 500 19 PRO A 53 2.13 -69.78 REMARK 500 19 ASP A 65 87.01 -53.64 REMARK 500 19 SER A 95 83.21 -58.86 REMARK 500 19 ASN A 105 69.96 -114.17 REMARK 500 19 GLU A 113 109.01 -167.59 REMARK 500 19 SER A 117 109.92 -56.38 REMARK 500 20 SER A 2 113.88 -165.00 REMARK 500 20 ASN A 15 46.06 -79.46 REMARK 500 20 ASP A 24 167.61 -44.39 REMARK 500 20 LYS A 40 29.51 38.92 REMARK 500 20 PRO A 53 3.74 -69.81 REMARK 500 20 CYS A 57 170.16 -53.94 REMARK 500 20 ASP A 65 95.24 -49.49 REMARK 500 20 GLU A 97 159.25 -49.55 REMARK 500 20 ASN A 105 73.91 -109.52 REMARK 500 20 ASP A 109 106.07 -38.06 REMARK 500 20 GLU A 113 107.39 -169.42 REMARK 500 20 PRO A 116 -169.51 -69.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002021070.1 RELATED DB: TARGETDB DBREF 2CS5 A 8 113 UNP P29074 PTN4_HUMAN 507 612 SEQADV 2CS5 GLY A 1 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 SER A 2 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 SER A 3 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 GLY A 4 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 SER A 5 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 SER A 6 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 GLY A 7 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 SER A 114 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 GLY A 115 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 PRO A 116 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 SER A 117 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 SER A 118 UNP P29074 CLONING ARTIFACT SEQADV 2CS5 GLY A 119 UNP P29074 CLONING ARTIFACT SEQRES 1 A 119 GLY SER SER GLY SER SER GLY ASN GLY GLY ILE PRO HIS SEQRES 2 A 119 ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP GLU ASN SEQRES 3 A 119 GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR ASP GLN SEQRES 4 A 119 LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO GLY THR SEQRES 5 A 119 PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU GLY ASP SEQRES 6 A 119 GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA GLU HIS SEQRES 7 A 119 THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SER CYS SEQRES 8 A 119 GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL ARG PRO SEQRES 9 A 119 ASN ALA VAL TYR ASP VAL VAL GLU GLU SER GLY PRO SER SEQRES 10 A 119 SER GLY HELIX 1 1 TYR A 37 LYS A 40 5 4 HELIX 2 2 THR A 79 ARG A 93 1 15 SHEET 1 A 5 VAL A 17 MET A 21 0 SHEET 2 A 5 LEU A 98 ARG A 103 -1 O VAL A 102 N VAL A 17 SHEET 3 A 5 GLN A 66 ILE A 70 -1 N VAL A 68 O LEU A 101 SHEET 4 A 5 MET A 41 VAL A 48 -1 N VAL A 43 O VAL A 67 SHEET 5 A 5 PHE A 31 GLY A 36 -1 N ASN A 32 O SER A 46 CISPEP 1 VAL A 58 PRO A 59 1 0.01 CISPEP 2 VAL A 58 PRO A 59 2 0.05 CISPEP 3 VAL A 58 PRO A 59 3 -0.03 CISPEP 4 VAL A 58 PRO A 59 4 -0.04 CISPEP 5 VAL A 58 PRO A 59 5 -0.07 CISPEP 6 VAL A 58 PRO A 59 6 -0.03 CISPEP 7 VAL A 58 PRO A 59 7 -0.03 CISPEP 8 VAL A 58 PRO A 59 8 -0.02 CISPEP 9 VAL A 58 PRO A 59 9 0.00 CISPEP 10 VAL A 58 PRO A 59 10 -0.08 CISPEP 11 VAL A 58 PRO A 59 11 -0.05 CISPEP 12 VAL A 58 PRO A 59 12 0.00 CISPEP 13 VAL A 58 PRO A 59 13 -0.08 CISPEP 14 VAL A 58 PRO A 59 14 -0.06 CISPEP 15 VAL A 58 PRO A 59 15 -0.10 CISPEP 16 VAL A 58 PRO A 59 16 -0.07 CISPEP 17 VAL A 58 PRO A 59 17 0.01 CISPEP 18 VAL A 58 PRO A 59 18 -0.09 CISPEP 19 VAL A 58 PRO A 59 19 -0.02 CISPEP 20 VAL A 58 PRO A 59 20 -0.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 238 0 0 2 5 0 0 6 0 0 0 10 END