HEADER PROTEIN BINDING 20-MAY-05 2CQW TITLE SOLUTION STRUCTURE OF RSGI RUH-041, A SMB-LIKE DOMAIN FROM TITLE 2 MOUSE CDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSHI DOMAIN CONTAINING 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SMB-LIKE DOMAIN; COMPND 5 SYNONYM: RSGI RUH-041, A SOMATOMEDIN_B-LIKE DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SUSD2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040315-19; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS NMR, SOMATOMEDIN_B-LIKE DOMAIN, PROTEIN BINDING, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.HAMADA,H.HIROTA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2CQW 1 VERSN REVDAT 1 20-NOV-05 2CQW 0 JRNL AUTH T.HAMADA,H.HIROTA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-041, A SMB-LIKE JRNL TITL 2 DOMAIN FROM MOUSE CDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.8 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CQW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024523. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.06MM SMB-LIKE DOMAIN U-15N, REMARK 210 13C; 20MM D-TRIS-HCL BUFFER REMARK 210 (PH 7.0); 100MM NACL; 0.02% REMARK 210 NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9295, REMARK 210 CYANA 1.0.8 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING 3D NMR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 -58.61 -134.83 REMARK 500 1 SER A 5 -59.59 -135.27 REMARK 500 1 SER A 6 145.98 66.83 REMARK 500 1 THR A 14 93.57 60.29 REMARK 500 1 ALA A 15 -63.61 -91.76 REMARK 500 1 ARG A 24 -93.37 -114.71 REMARK 500 1 GLU A 54 42.74 -162.05 REMARK 500 1 MET A 62 117.56 59.23 REMARK 500 1 MET A 63 -54.23 -141.41 REMARK 500 1 VAL A 70 145.94 -170.26 REMARK 500 1 GLN A 71 122.32 -174.14 REMARK 500 1 LYS A 74 143.35 -170.16 REMARK 500 1 TRP A 75 116.32 -175.02 REMARK 500 1 ASP A 77 99.83 176.81 REMARK 500 2 SER A 2 170.58 179.17 REMARK 500 2 ILE A 8 89.85 63.81 REMARK 500 2 PRO A 11 -167.42 -74.99 REMARK 500 2 PHE A 13 148.92 -174.22 REMARK 500 2 THR A 14 -62.88 -143.06 REMARK 500 2 ALA A 17 74.10 61.11 REMARK 500 2 ARG A 24 -92.19 -108.90 REMARK 500 2 GLU A 54 37.04 -175.15 REMARK 500 2 SER A 61 85.17 56.30 REMARK 500 2 MET A 63 -71.40 67.00 REMARK 500 2 SER A 82 166.86 179.49 REMARK 500 3 SER A 2 -58.76 -160.37 REMARK 500 3 SER A 3 169.18 58.57 REMARK 500 3 SER A 6 155.96 62.93 REMARK 500 3 ILE A 8 87.26 -162.19 REMARK 500 3 PHE A 13 133.26 -172.00 REMARK 500 3 GLN A 18 -71.79 -88.49 REMARK 500 3 ARG A 24 -94.12 -44.53 REMARK 500 3 GLU A 54 40.67 -157.91 REMARK 500 3 MET A 63 93.13 46.52 REMARK 500 3 VAL A 69 -67.08 -98.57 REMARK 500 3 VAL A 70 -163.98 44.26 REMARK 500 3 GLN A 71 166.33 177.39 REMARK 500 4 SER A 2 89.09 43.65 REMARK 500 4 SER A 5 118.97 -173.66 REMARK 500 4 ARG A 24 -93.68 -120.45 REMARK 500 4 GLU A 54 37.90 -176.20 REMARK 500 4 LEU A 56 154.78 -49.65 REMARK 500 4 MET A 63 -56.46 -152.57 REMARK 500 4 VAL A 69 144.53 63.33 REMARK 500 4 GLN A 71 170.89 -59.24 REMARK 500 4 THR A 76 114.32 59.17 REMARK 500 4 SER A 82 157.13 59.41 REMARK 500 4 SER A 83 -58.61 -155.87 REMARK 500 5 SER A 5 171.18 62.93 REMARK 500 5 PHE A 13 -56.02 -128.39 REMARK 500 5 THR A 14 94.32 54.64 REMARK 500 5 ALA A 17 87.60 -172.44 REMARK 500 5 ARG A 24 -93.43 -121.79 REMARK 500 5 GLU A 54 38.43 -174.65 REMARK 500 5 LEU A 56 156.06 -49.82 REMARK 500 5 SER A 58 171.61 179.05 REMARK 500 5 LYS A 66 144.70 -172.91 REMARK 500 5 HIS A 72 166.94 58.64 REMARK 500 5 LEU A 73 -65.21 -166.33 REMARK 500 5 LYS A 74 -61.73 -106.16 REMARK 500 5 ASP A 77 145.30 62.47 REMARK 500 5 SER A 82 170.76 54.03 REMARK 500 6 ILE A 8 83.81 64.26 REMARK 500 6 ALA A 15 73.27 46.55 REMARK 500 6 SER A 22 -73.30 -48.26 REMARK 500 6 ARG A 24 -93.19 -46.87 REMARK 500 6 GLU A 54 40.88 -177.74 REMARK 500 6 SER A 59 -59.66 -128.74 REMARK 500 6 MET A 62 88.34 50.59 REMARK 500 6 LYS A 66 174.47 60.91 REMARK 500 6 HIS A 72 147.39 178.25 REMARK 500 6 LYS A 74 149.98 -171.48 REMARK 500 6 TRP A 75 139.23 -179.64 REMARK 500 7 SER A 5 90.61 -66.82 REMARK 500 7 ARG A 24 -92.58 -119.31 REMARK 500 7 CYS A 32 -168.82 -166.76 REMARK 500 7 GLU A 54 38.96 -177.88 REMARK 500 7 LEU A 56 156.25 -47.77 REMARK 500 7 SER A 58 -57.82 -123.31 REMARK 500 7 SER A 59 -65.96 68.65 REMARK 500 7 SER A 61 91.61 43.79 REMARK 500 7 MET A 63 96.81 54.74 REMARK 500 7 LYS A 66 148.03 -170.44 REMARK 500 7 ASP A 67 -64.06 -97.20 REMARK 500 7 PHE A 68 -60.57 71.57 REMARK 500 7 GLN A 71 -59.38 -150.14 REMARK 500 7 LYS A 74 137.52 65.61 REMARK 500 7 THR A 76 156.44 60.58 REMARK 500 7 SER A 79 -62.86 -158.53 REMARK 500 8 SER A 5 103.24 53.58 REMARK 500 8 THR A 14 143.14 60.97 REMARK 500 8 ARG A 24 -93.80 -124.45 REMARK 500 8 LEU A 53 30.68 -98.27 REMARK 500 8 GLU A 54 40.02 -177.76 REMARK 500 8 SER A 58 83.35 -168.81 REMARK 500 9 SER A 3 124.12 -174.64 REMARK 500 9 SER A 6 152.87 178.10 REMARK 500 9 THR A 14 -59.76 -156.88 REMARK 500 9 ALA A 15 -60.51 -159.95 REMARK 500 9 GLN A 18 -61.98 -171.52 REMARK 500 9 ARG A 24 -92.08 -60.82 REMARK 500 9 GLU A 54 37.18 -176.76 REMARK 500 9 LEU A 56 155.03 -46.97 REMARK 500 9 SER A 58 -55.49 -178.11 REMARK 500 9 SER A 59 76.95 39.54 REMARK 500 9 MET A 62 108.03 62.18 REMARK 500 9 SER A 83 83.82 -67.92 REMARK 500 10 SER A 3 148.84 66.21 REMARK 500 10 SER A 5 129.56 64.00 REMARK 500 10 GLN A 18 172.42 68.90 REMARK 500 10 ARG A 24 -94.32 -44.17 REMARK 500 10 GLU A 54 45.79 -163.34 REMARK 500 10 LEU A 56 99.34 -38.84 REMARK 500 10 SER A 58 -63.48 -124.61 REMARK 500 10 LEU A 73 149.71 -173.74 REMARK 500 10 ASP A 77 99.88 -173.20 REMARK 500 10 SER A 82 -53.66 -133.48 REMARK 500 10 SER A 83 159.22 60.26 REMARK 500 11 SER A 2 146.05 62.33 REMARK 500 11 SER A 3 -59.36 -154.14 REMARK 500 11 SER A 5 98.73 55.67 REMARK 500 11 SER A 6 121.74 -173.05 REMARK 500 11 ALA A 15 160.93 60.17 REMARK 500 11 ALA A 17 -65.82 -150.48 REMARK 500 11 LEU A 23 32.13 -167.94 REMARK 500 11 ARG A 24 -70.71 -90.71 REMARK 500 11 GLU A 54 37.97 -172.41 REMARK 500 11 LEU A 56 155.44 -49.15 REMARK 500 11 SER A 59 -61.45 -107.32 REMARK 500 11 LYS A 74 138.30 -172.69 REMARK 500 11 TRP A 75 131.57 178.66 REMARK 500 11 ASP A 77 95.54 177.00 REMARK 500 11 SER A 83 169.74 177.93 REMARK 500 12 SER A 6 150.61 179.02 REMARK 500 12 THR A 14 -44.10 -168.44 REMARK 500 12 ALA A 15 164.72 67.03 REMARK 500 12 ARG A 24 -93.89 -132.02 REMARK 500 12 GLU A 54 40.83 -176.68 REMARK 500 12 LEU A 56 155.51 -47.95 REMARK 500 12 SER A 59 -59.54 -175.62 REMARK 500 12 LYS A 74 178.56 65.86 REMARK 500 12 TRP A 75 122.63 63.82 REMARK 500 12 SER A 83 164.69 68.65 REMARK 500 13 SER A 2 -58.43 -162.02 REMARK 500 13 SER A 3 99.68 -55.34 REMARK 500 13 SER A 5 -60.20 -137.38 REMARK 500 13 SER A 6 136.33 62.35 REMARK 500 13 GLN A 18 -175.90 -59.57 REMARK 500 13 ARG A 24 -93.25 -124.06 REMARK 500 13 GLU A 54 42.38 -177.08 REMARK 500 13 LEU A 56 100.14 -39.89 REMARK 500 13 SER A 58 154.09 -44.09 REMARK 500 13 MET A 62 -72.67 68.19 REMARK 500 13 MET A 63 92.77 54.10 REMARK 500 14 GLN A 18 165.52 59.73 REMARK 500 14 LEU A 23 41.92 -109.87 REMARK 500 14 ARG A 24 -93.20 -131.81 REMARK 500 14 GLU A 54 55.39 -172.52 REMARK 500 14 ILE A 55 -45.41 -130.21 REMARK 500 14 LEU A 56 158.42 -40.43 REMARK 500 14 MET A 62 118.58 -179.66 REMARK 500 14 MET A 63 153.85 -46.17 REMARK 500 14 LYS A 66 75.16 -165.86 REMARK 500 14 PHE A 68 121.58 -176.68 REMARK 500 14 SER A 82 107.57 -41.92 REMARK 500 15 SER A 2 153.12 65.19 REMARK 500 15 SER A 3 165.57 177.60 REMARK 500 15 SER A 6 -53.74 -134.26 REMARK 500 15 ILE A 8 -52.61 164.20 REMARK 500 15 ALA A 17 82.19 49.36 REMARK 500 15 GLN A 18 -178.68 -175.76 REMARK 500 15 ARG A 24 -92.80 -102.78 REMARK 500 15 GLU A 54 46.10 -159.55 REMARK 500 15 SER A 58 85.75 -178.03 REMARK 500 15 SER A 59 170.82 56.20 REMARK 500 15 MET A 62 108.51 -177.71 REMARK 500 15 ASP A 67 132.60 63.09 REMARK 500 15 LEU A 73 89.73 54.72 REMARK 500 15 LYS A 74 79.00 -175.51 REMARK 500 15 THR A 76 136.79 -172.28 REMARK 500 15 ASP A 77 99.55 177.84 REMARK 500 15 SER A 83 157.74 66.16 REMARK 500 16 SER A 2 -58.56 -146.01 REMARK 500 16 ARG A 24 -94.29 -117.43 REMARK 500 16 GLU A 54 48.40 -158.17 REMARK 500 16 SER A 61 98.98 57.44 REMARK 500 16 ASP A 67 161.12 -47.46 REMARK 500 16 SER A 83 167.40 69.07 REMARK 500 17 ALA A 17 -60.59 -143.38 REMARK 500 17 GLN A 18 -175.88 -57.35 REMARK 500 17 LEU A 23 32.52 -168.99 REMARK 500 17 ARG A 24 -92.53 -105.38 REMARK 500 17 GLU A 54 42.99 -146.37 REMARK 500 17 SER A 58 83.55 -171.72 REMARK 500 17 SER A 61 114.22 64.86 REMARK 500 17 PHE A 68 147.09 -174.51 REMARK 500 17 HIS A 72 -61.84 -171.76 REMARK 500 17 LEU A 73 153.74 -45.74 REMARK 500 17 SER A 83 157.56 65.23 REMARK 500 18 SER A 5 143.78 -175.45 REMARK 500 18 SER A 6 165.92 -45.62 REMARK 500 18 ARG A 24 -93.53 -121.04 REMARK 500 18 GLU A 54 42.67 -167.59 REMARK 500 18 SER A 59 -59.77 73.01 REMARK 500 18 MET A 63 96.25 -67.47 REMARK 500 18 SER A 82 134.70 63.49 REMARK 500 19 THR A 14 119.66 63.41 REMARK 500 19 ARG A 24 -95.58 -109.55 REMARK 500 19 CYS A 32 -159.38 -147.24 REMARK 500 19 LEU A 53 30.08 -99.73 REMARK 500 19 GLU A 54 39.77 -174.48 REMARK 500 19 LEU A 56 102.01 -42.57 REMARK 500 19 VAL A 69 116.98 -171.89 REMARK 500 19 HIS A 72 132.47 177.98 REMARK 500 19 LEU A 73 85.19 -165.56 REMARK 500 19 TRP A 75 115.24 -177.01 REMARK 500 19 THR A 76 137.81 -170.01 REMARK 500 19 ASP A 77 99.86 176.43 REMARK 500 20 THR A 14 154.39 -39.46 REMARK 500 20 ALA A 15 67.24 -169.33 REMARK 500 20 CYS A 21 54.05 -118.53 REMARK 500 20 ARG A 24 -94.20 -50.03 REMARK 500 20 LEU A 53 30.51 -98.97 REMARK 500 20 GLU A 54 31.61 -168.94 REMARK 500 20 LEU A 56 154.88 -48.75 REMARK 500 20 MET A 62 87.86 57.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007006808.1 RELATED DB: TARGETDB DBREF 2CQW A 8 78 UNP Q9DBX3 Q9DBX3_MOUSE 16 86 SEQADV 2CQW GLY A 1 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW SER A 2 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW SER A 3 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW GLY A 4 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW SER A 5 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW SER A 6 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW GLY A 7 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW SER A 79 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW GLY A 80 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW PRO A 81 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW SER A 82 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW SER A 83 UNP Q9DBX3 CLONING ARTIFACT SEQADV 2CQW GLY A 84 UNP Q9DBX3 CLONING ARTIFACT SEQRES 1 A 84 GLY SER SER GLY SER SER GLY ILE PRO GLY PRO GLY PHE SEQRES 2 A 84 THR ALA GLY ALA GLN GLY SER CYS SER LEU ARG CYS GLY SEQRES 3 A 84 ALA GLN ASP GLY LEU CYS SER CYS HIS PRO THR CYS SER SEQRES 4 A 84 GLY LEU GLY THR CYS CYS GLU ASP PHE LEU ASP TYR CYS SEQRES 5 A 84 LEU GLU ILE LEU PRO SER SER GLY SER MET MET GLY GLY SEQRES 6 A 84 LYS ASP PHE VAL VAL GLN HIS LEU LYS TRP THR ASP PRO SEQRES 7 A 84 SER GLY PRO SER SER GLY HELIX 1 1 THR A 37 GLY A 42 1 6 HELIX 2 2 ASP A 47 CYS A 52 1 6 SSBOND 1 CYS A 21 CYS A 34 1555 1555 2.10 SSBOND 2 CYS A 25 CYS A 52 1555 1555 2.01 SSBOND 3 CYS A 32 CYS A 45 1555 1555 2.10 SSBOND 4 CYS A 38 CYS A 44 1555 1555 2.09 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 300 0 0 2 0 0 0 6 0 0 0 7 END