HEADER VIRAL PROTEIN 16-APR-98 2CPS TITLE SOLUTION NMR STRUCTURES OF THE MAJOR COAT PROTEIN OF TITLE 2 FILAMENTOUS BACTERIOPHAGE M13 SOLUBILIZED IN SODIUM TITLE 3 DODECYL SULPHATE MICELLES, 25 LOWEST ENERGY STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: M13 MAJOR COAT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M13 GENE-VIII-PROTEIN OR M13 GVIIIP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE M13; SOURCE 3 ORGANISM_TAXID: 10870; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: M13 KEYWDS MAJOR COAT PROTEIN, BACTERIOPHAGE M13, ASSEMBLY, MICELLE, KEYWDS 2 MEMBRANE, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR C.H.M.PAPAVOINE,B.E.C.CHRISTIAANS,R.H.A.FOLMER, AUTHOR 2 R.N.H.KONINGS,C.W.HILBERS REVDAT 2 24-FEB-09 2CPS 1 VERSN REVDAT 1 11-NOV-98 2CPS 0 JRNL AUTH C.H.PAPAVOINE,B.E.CHRISTIAANS,R.H.FOLMER, JRNL AUTH 2 R.N.KONINGS,C.W.HILBERS JRNL TITL SOLUTION STRUCTURE OF THE M13 MAJOR COAT PROTEIN JRNL TITL 2 IN DETERGENT MICELLES: A BASIS FOR A MODEL OF JRNL TITL 3 PHAGE ASSEMBLY INVOLVING SPECIFIC RESIDUES. JRNL REF J.MOL.BIOL. V. 282 401 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9735296 JRNL DOI 10.1006/JMBI.1998.1860 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.H.PAPAVOINE,M.L.REMEROWSKI,L.M.HORSTINK, REMARK 1 AUTH 2 R.N.KONINGS,C.W.HILBERS,F.J.VAN DE VEN REMARK 1 TITL BACKBONE DYNAMICS OF THE MAJOR COAT PROTEIN OF REMARK 1 TITL 2 BACTERIOPHAGE M13 IN DETERGENT MICELLES BY 15N REMARK 1 TITL 3 NUCLEAR MAGNETIC RESONANCE RELAXATION MEASUREMENTS REMARK 1 TITL 4 USING THE MODEL-FREE APPROACH AND REDUCED SPECTRAL REMARK 1 TITL 5 DENSITY MAPPING REMARK 1 REF BIOCHEMISTRY V. 36 4015 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.H.PAPAVOINE,J.M.AELEN,R.N.KONINGS,C.W.HILBERS, REMARK 1 AUTH 2 F.J.VAN DE VEN REMARK 1 TITL NMR STUDIES OF THE MAJOR COAT PROTEIN OF REMARK 1 TITL 2 BACTERIOPHAGE M13. STRUCTURAL INFORMATION OF REMARK 1 TITL 3 GVIIIP IN DODECYLPHOSPHOCHOLINE MICELLES REMARK 1 REF EUR.J.BIOCHEM. V. 232 490 1995 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.H.PAPAVOINE,R.N.KONINGS,C.W.HILBERS, REMARK 1 AUTH 2 F.J.VAN DE VEN REMARK 1 TITL LOCATION OF M13 COAT PROTEIN IN SODIUM DODECYL REMARK 1 TITL 2 SULFATE MICELLES AS DETERMINED BY NMR REMARK 1 REF BIOCHEMISTRY V. 33 12990 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH F.J.VAN DE VEN,J.W.VAN OS,J.M.AELEN,S.S.WYMENGA, REMARK 1 AUTH 2 M.L.REMEROWSKI,R.N.KONINGS,C.W.HILBERS REMARK 1 TITL ASSIGNMENT OF 1H, 15N, AND BACKBONE 13C RESONANCES REMARK 1 TITL 2 IN DETERGENT-SOLUBILIZED M13 COAT PROTEIN VIA REMARK 1 TITL 3 MULTINUCLEAR MULTIDIMENSIONAL NMR: A MODEL FOR THE REMARK 1 TITL 4 COAT PROTEIN MONOMER REMARK 1 REF BIOCHEMISTRY V. 32 8322 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CPS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 311 REMARK 210 PH : 4.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY, TOCSY, NOESY, NOESY REMARK 210 -HMQC (15N AND 13C), TOCSY- REMARK 210 HMQC (15N), HCCH-TOCSY, ROESY- REMARK 210 GHSQC, HMQC-NOESY-GHSQC, HMQC- REMARK 210 J, HNHA, HACACB-COSY, HNHB, REMARK 210 HSQC(3J CGN), HSQC(3JCGC') REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ, 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY+, AM, AMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : RESTRAINED MOLECULAR REMARK 210 DYNAMICS, SIMULATED ANNEALING, REMARK 210 THIS VERSION OF X-PLOR WAS REMARK 210 EXTENDED FOR FLOATING CHIRALITY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY, DISTANCE REMARK 210 RESTRAINTS SMALLER THAN 0.5 A, REMARK 210 DIHEDRAL VIOLATIONS SMALLER REMARK 210 THAN 5 DEGREES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N -LABELED M13 COAT PROTEIN SOLUBILIZED REMARK 210 IN DEUTERATED SODIUM DODECYL SULPHATE MICELLES (CONCENTRATION REMARK 210 COAT PROTEIN/SDS = 1:250) REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 63.64 -67.91 REMARK 500 1 ASP A 5 94.18 47.83 REMARK 500 1 ALA A 7 -85.91 -86.75 REMARK 500 1 SER A 17 42.38 -93.24 REMARK 500 1 ALA A 18 69.62 -100.36 REMARK 500 2 ASP A 4 -67.70 -158.77 REMARK 500 2 ASP A 5 79.51 -179.65 REMARK 500 2 ALA A 18 47.89 -93.17 REMARK 500 2 ALA A 49 111.13 -39.47 REMARK 500 3 GLU A 2 50.80 174.34 REMARK 500 3 ASP A 4 -62.70 -103.93 REMARK 500 3 SER A 17 27.11 -151.43 REMARK 500 3 THR A 19 30.57 -97.63 REMARK 500 3 ALA A 49 124.72 68.27 REMARK 500 4 GLU A 2 119.32 67.39 REMARK 500 4 ASP A 5 101.92 -46.37 REMARK 500 4 SER A 17 -54.41 -136.08 REMARK 500 4 ALA A 18 63.81 -100.66 REMARK 500 5 ASP A 5 140.11 63.20 REMARK 500 5 ALA A 18 49.92 -96.18 REMARK 500 6 GLU A 2 130.45 176.01 REMARK 500 6 ASP A 4 44.05 -107.86 REMARK 500 6 ASP A 5 79.48 -176.35 REMARK 500 6 ALA A 7 -48.98 85.96 REMARK 500 6 ALA A 18 64.50 -100.47 REMARK 500 6 ALA A 49 174.26 70.70 REMARK 500 7 GLU A 2 46.74 174.76 REMARK 500 7 ASP A 4 -68.01 -130.35 REMARK 500 7 ASP A 5 116.29 -169.77 REMARK 500 7 THR A 19 37.73 -94.83 REMARK 500 7 SER A 47 40.01 -159.23 REMARK 500 7 ALA A 49 87.89 53.63 REMARK 500 8 GLU A 2 99.18 66.76 REMARK 500 8 ASP A 5 99.47 -42.62 REMARK 500 8 ALA A 18 66.39 -100.34 REMARK 500 8 SER A 47 52.44 -105.67 REMARK 500 9 ASP A 4 -73.80 -108.49 REMARK 500 9 ASP A 5 120.93 62.10 REMARK 500 9 LYS A 8 74.59 33.82 REMARK 500 9 ALA A 9 -73.44 -64.35 REMARK 500 10 ASP A 4 63.50 -68.50 REMARK 500 10 ALA A 9 -78.65 -38.23 REMARK 500 10 THR A 19 34.33 -98.99 REMARK 500 10 SER A 47 24.85 49.03 REMARK 500 10 ALA A 49 156.23 -43.54 REMARK 500 11 GLU A 2 42.51 177.94 REMARK 500 11 ASP A 5 84.35 179.50 REMARK 500 11 ALA A 7 -48.22 85.78 REMARK 500 11 ALA A 9 -73.20 -53.12 REMARK 500 11 SER A 17 55.54 -118.91 REMARK 500 11 ILE A 32 -62.63 -100.45 REMARK 500 11 SER A 47 35.95 -96.72 REMARK 500 11 ALA A 49 54.35 167.46 REMARK 500 12 GLU A 2 -179.61 61.94 REMARK 500 12 ASP A 4 58.82 -140.07 REMARK 500 12 ASP A 5 94.84 -178.85 REMARK 500 12 LYS A 8 81.37 37.07 REMARK 500 12 THR A 46 44.49 38.84 REMARK 500 12 ALA A 49 -84.73 -41.15 REMARK 500 13 ASP A 4 75.74 -116.21 REMARK 500 13 SER A 17 67.92 -165.12 REMARK 500 13 ALA A 18 42.12 -89.63 REMARK 500 13 THR A 46 34.51 39.58 REMARK 500 13 ALA A 49 160.50 -43.98 REMARK 500 14 GLU A 2 110.12 176.92 REMARK 500 14 ASP A 5 123.29 71.68 REMARK 500 14 ALA A 9 -84.53 -58.66 REMARK 500 14 SER A 17 69.05 -158.02 REMARK 500 14 LYS A 44 -62.31 -92.97 REMARK 500 14 ALA A 49 72.96 56.01 REMARK 500 15 ASP A 4 56.81 -147.99 REMARK 500 15 ASP A 5 99.92 -179.81 REMARK 500 15 LYS A 8 -54.63 -122.22 REMARK 500 15 ALA A 49 72.83 54.73 REMARK 500 16 GLU A 2 76.18 57.99 REMARK 500 16 ASP A 4 -73.18 -122.88 REMARK 500 16 ASP A 5 107.08 -54.87 REMARK 500 16 ALA A 7 -46.73 84.06 REMARK 500 16 LYS A 8 -54.62 -135.57 REMARK 500 16 ALA A 9 -82.55 -37.75 REMARK 500 16 SER A 17 -58.05 -141.91 REMARK 500 16 ALA A 49 -87.77 53.27 REMARK 500 17 GLU A 2 95.10 40.98 REMARK 500 17 ASP A 4 86.19 -161.01 REMARK 500 17 ASP A 5 77.08 -173.00 REMARK 500 17 LYS A 8 37.42 31.97 REMARK 500 17 LYS A 44 -74.12 -95.48 REMARK 500 18 ASP A 5 120.96 61.31 REMARK 500 18 SER A 47 -52.65 -161.78 REMARK 500 18 LYS A 48 69.54 -64.34 REMARK 500 18 ALA A 49 143.13 -171.81 REMARK 500 19 GLU A 2 156.28 -49.39 REMARK 500 19 ASP A 5 97.96 58.54 REMARK 500 19 ALA A 49 160.27 164.74 REMARK 500 20 GLU A 2 95.88 53.83 REMARK 500 20 ASP A 4 -76.85 -97.19 REMARK 500 20 ASP A 5 75.05 -176.93 REMARK 500 20 ALA A 7 49.63 -96.96 REMARK 500 20 LYS A 8 74.83 34.52 REMARK 500 20 ALA A 18 50.48 -93.70 REMARK 500 20 ALA A 49 161.39 -49.76 REMARK 500 21 GLU A 2 106.38 -44.03 REMARK 500 21 ASP A 4 64.61 -119.12 REMARK 500 21 ASP A 5 142.32 -176.18 REMARK 500 21 ALA A 18 72.92 -101.03 REMARK 500 21 ALA A 49 -176.67 56.57 REMARK 500 22 GLU A 2 125.39 172.30 REMARK 500 22 ASP A 5 71.30 -155.86 REMARK 500 22 ALA A 9 -70.64 -75.88 REMARK 500 22 SER A 17 -76.41 -78.96 REMARK 500 22 THR A 19 35.09 -95.48 REMARK 500 22 SER A 47 51.32 -172.11 REMARK 500 22 ALA A 49 92.91 -43.65 REMARK 500 23 ASP A 4 86.41 -163.72 REMARK 500 23 ASP A 5 91.11 58.45 REMARK 500 23 ALA A 7 43.75 -93.24 REMARK 500 23 LYS A 8 63.23 28.46 REMARK 500 23 ALA A 9 -85.70 -100.33 REMARK 500 23 TYR A 24 -44.79 -140.36 REMARK 500 23 ALA A 49 -87.20 53.60 REMARK 500 24 ASP A 4 79.07 -114.41 REMARK 500 24 ASP A 5 95.20 57.05 REMARK 500 24 ALA A 7 -46.52 82.63 REMARK 500 24 LYS A 8 -66.77 -120.97 REMARK 500 24 ALA A 9 -89.08 -43.25 REMARK 500 24 SER A 17 28.63 -146.74 REMARK 500 24 TYR A 24 -45.73 -142.17 REMARK 500 24 LYS A 44 -70.37 -49.37 REMARK 500 24 ALA A 49 -71.58 -43.75 REMARK 500 25 GLU A 2 177.53 56.10 REMARK 500 25 ASP A 5 85.90 178.59 REMARK 500 25 LYS A 8 75.74 34.49 REMARK 500 25 ALA A 9 -73.21 -81.15 REMARK 500 25 ALA A 18 39.57 -99.71 REMARK 500 25 TRP A 26 -64.10 -90.85 REMARK 500 25 LYS A 44 -75.41 -58.91 REMARK 500 25 THR A 46 -71.62 -77.62 REMARK 500 25 ALA A 49 -168.19 43.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 2CPS A 1 50 UNP P69541 COATB_BPM13 24 73 SEQRES 1 A 50 ALA GLU GLY ASP ASP PRO ALA LYS ALA ALA PHE ASN SER SEQRES 2 A 50 LEU GLN ALA SER ALA THR GLU TYR ILE GLY TYR ALA TRP SEQRES 3 A 50 ALA MET VAL VAL VAL ILE VAL GLY ALA THR ILE GLY ILE SEQRES 4 A 50 LYS LEU PHE LYS LYS PHE THR SER LYS ALA SER HELIX 1 1 LYS A 8 GLN A 15 1 8 HELIX 2 2 TYR A 24 THR A 46 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 247 0 0 2 0 0 0 6 0 0 0 4 END