HEADER TRANSFERASE 05-APR-06 2CJQ TITLE BOVINE VIRAL DIARRHEA VIRUS CP7-R12 RNA-DEPENDENT RNA TITLE 2 POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: POLYMERASE DOMAIN, RESIDUES 3189-3907; COMPND 5 SYNONYM: BOVINE VIRAL DIARRHEA VIRUS CP7 POLYMERASE, NS5B; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOVINE VIRAL DIARRHEA VIRUS; SOURCE 3 ORGANISM_COMMON: BVDV; SOURCE 4 ORGANISM_TAXID: 11099; SOURCE 5 STRAIN: CP7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCP7-R12; SOURCE 10 OTHER_DETAILS: CP7-R12 GENERATED BY RNA RECOMBINATION KEYWDS TRANSFERASE, RNA-DEPENDENT RNA POLYMERASE, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, BOVINE VIRAL DIARRHEA VIRUS, BVDV, KEYWDS 3 HELICASE, MEMBRANE, PROTEASE, HYDROLASE, RNA-DIRECTED RNA KEYWDS 4 POLYMERASE, VIRAL POLYMERASE, NUCLEOTIDE-BINDING, KEYWDS 5 TRANSMEMBRANE, THIOL PROTEASE, SERINE PROTEASE, KEYWDS 6 ATP-BINDING, POLYPROTEIN, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.H.CHOI,A.GALLEI,P.BECHER,M.G.ROSSMANN REVDAT 3 02-JUN-09 2CJQ 1 COMPND REMARK SEQADV MASTER REVDAT 2 24-FEB-09 2CJQ 1 VERSN REVDAT 1 19-JUL-06 2CJQ 0 JRNL AUTH K.H.CHOI,A.GALLEI,P.BECHER,M.G.ROSSMANN JRNL TITL THE STRUCTURE OF BOVINE VIRAL DIARRHEA VIRUS RNA- JRNL TITL 2 DEPENDENT RNA POLYMERASE AND ITS AMINO-TERMINAL JRNL TITL 3 DOMAIN. JRNL REF STRUCTURE V. 14 1107 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16843892 JRNL DOI 10.1016/J.STR.2006.05.020 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXISUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 21373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.2311 REMARK 3 FREE R VALUE : 0.2587 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.2 REMARK 3 FREE R VALUE TEST SET COUNT : 2104 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4393 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.501 REMARK 3 B22 (A**2) : -2.501 REMARK 3 B33 (A**2) : 5.001 REMARK 3 B12 (A**2) : -7.015 REMARK 3 B13 (A**2) : 0.000 REMARK 3 B23 (A**2) : 0.000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008111 REMARK 3 BOND ANGLES (DEGREES) : 1.43684 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.9 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.953 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.337098 REMARK 3 BSOL : 44.7499 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CJQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-06. REMARK 100 THE PDBE ID CODE IS EBI-28411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9766 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21373 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1S48 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.7 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% POLYETHYLENE GLYCOL 8000, REMARK 280 0.1M HEPES PH 7.5, 8% ETHYLENE GLYCOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.46233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.92467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 TRP A 3 REMARK 465 PHE A 4 REMARK 465 LEU A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 ASN A 9 REMARK 465 LYS A 10 REMARK 465 GLN A 11 REMARK 465 MET A 12 REMARK 465 SER A 13 REMARK 465 LEU A 14 REMARK 465 THR A 15 REMARK 465 PRO A 16 REMARK 465 LEU A 17 REMARK 465 PHE A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 LEU A 21 REMARK 465 LEU A 22 REMARK 465 LEU A 23 REMARK 465 ARG A 24 REMARK 465 CYS A 25 REMARK 465 PRO A 26 REMARK 465 PRO A 27 REMARK 465 LYS A 28 REMARK 465 ILE A 29 REMARK 465 LYS A 30 REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 465 LYS A 33 REMARK 465 GLY A 34 REMARK 465 HIS A 35 REMARK 465 MET A 36 REMARK 465 ALA A 37 REMARK 465 SER A 38 REMARK 465 ALA A 39 REMARK 465 TYR A 40 REMARK 465 GLN A 41 REMARK 465 LEU A 42 REMARK 465 ALA A 43 REMARK 465 GLN A 44 REMARK 465 GLY A 45 REMARK 465 ASN A 46 REMARK 465 TRP A 47 REMARK 465 GLU A 48 REMARK 465 PRO A 49 REMARK 465 LEU A 50 REMARK 465 ASP A 51 REMARK 465 CYS A 52 REMARK 465 GLY A 53 REMARK 465 VAL A 54 REMARK 465 HIS A 55 REMARK 465 LEU A 56 REMARK 465 GLY A 57 REMARK 465 THR A 58 REMARK 465 ILE A 59 REMARK 465 PRO A 60 REMARK 465 ALA A 61 REMARK 465 ARG A 62 REMARK 465 ARG A 63 REMARK 465 VAL A 64 REMARK 465 LYS A 65 REMARK 465 ILE A 66 REMARK 465 HIS A 67 REMARK 465 PRO A 68 REMARK 465 TYR A 69 REMARK 465 GLU A 70 REMARK 465 ALA A 71 REMARK 465 TYR A 72 REMARK 465 LEU A 73 REMARK 465 LYS A 74 REMARK 465 LEU A 75 REMARK 465 LYS A 76 REMARK 465 ASP A 77 REMARK 465 LEU A 78 REMARK 465 LEU A 79 REMARK 465 GLU A 80 REMARK 465 GLU A 81 REMARK 465 GLU A 82 REMARK 465 GLU A 83 REMARK 465 LYS A 84 REMARK 465 LYS A 85 REMARK 465 PRO A 86 REMARK 465 LYS A 87 REMARK 465 CYS A 88 REMARK 465 ARG A 89 REMARK 465 ASP A 90 REMARK 465 THR A 91 REMARK 465 LEU A 125 REMARK 465 ASP A 126 REMARK 465 ARG A 127 REMARK 465 GLU A 128 REMARK 465 GLY A 129 REMARK 465 HIS A 130 REMARK 465 LYS A 131 REMARK 465 ARG A 132 REMARK 465 ARG A 157 REMARK 465 ALA A 158 REMARK 465 GLN A 159 REMARK 465 GLU A 265 REMARK 465 LYS A 266 REMARK 465 ARG A 267 REMARK 465 ASP A 268 REMARK 465 VAL A 269 REMARK 465 SER A 270 REMARK 465 ASP A 271 REMARK 465 ASP A 272 REMARK 465 TRP A 273 REMARK 465 GLN A 274 REMARK 465 SER A 275 REMARK 465 GLY A 276 REMARK 465 ASP A 277 REMARK 465 LEU A 278 REMARK 465 VAL A 279 REMARK 465 ASP A 280 REMARK 465 GLU A 281 REMARK 465 LYS A 282 REMARK 465 LYS A 283 REMARK 465 ASP A 531 REMARK 465 SER A 532 REMARK 465 SER A 533 REMARK 465 GLY A 534 REMARK 465 GLU A 535 REMARK 465 ARG A 536 REMARK 465 HIS A 673 REMARK 465 TYR A 674 REMARK 465 GLU A 675 REMARK 465 GLN A 676 REMARK 465 LEU A 677 REMARK 465 GLN A 678 REMARK 465 LEU A 679 REMARK 465 GLN A 680 REMARK 465 ALA A 681 REMARK 465 ARG A 682 REMARK 465 THR A 683 REMARK 465 SER A 684 REMARK 465 PRO A 685 REMARK 465 VAL A 686 REMARK 465 THR A 687 REMARK 465 GLY A 688 REMARK 465 VAL A 689 REMARK 465 GLY A 690 REMARK 465 THR A 691 REMARK 465 GLU A 692 REMARK 465 ARG A 693 REMARK 465 TYR A 694 REMARK 465 LYS A 695 REMARK 465 LEU A 696 REMARK 465 GLY A 697 REMARK 465 PRO A 698 REMARK 465 ILE A 699 REMARK 465 VAL A 700 REMARK 465 ASN A 701 REMARK 465 LEU A 702 REMARK 465 LEU A 703 REMARK 465 LEU A 704 REMARK 465 ARG A 705 REMARK 465 ARG A 706 REMARK 465 LEU A 707 REMARK 465 ARG A 708 REMARK 465 VAL A 709 REMARK 465 LEU A 710 REMARK 465 LEU A 711 REMARK 465 MET A 712 REMARK 465 ALA A 713 REMARK 465 ALA A 714 REMARK 465 VAL A 715 REMARK 465 GLY A 716 REMARK 465 ALA A 717 REMARK 465 SER A 718 REMARK 465 SER A 719 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 221 - NH2 ARG A 295 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 310 C - N - CA ANGL. DEV. = -14.0 DEGREES REMARK 500 PRO A 339 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 PHE A 437 N - CA - C ANGL. DEV. = -23.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 110 -164.70 -74.06 REMARK 500 ASN A 111 57.17 -155.26 REMARK 500 LYS A 114 -37.75 -131.48 REMARK 500 ASP A 161 103.09 -173.72 REMARK 500 THR A 162 0.15 -56.50 REMARK 500 ASP A 174 88.91 -68.99 REMARK 500 ALA A 221 156.80 -49.06 REMARK 500 PHE A 224 -80.90 -52.79 REMARK 500 LEU A 225 3.11 -62.39 REMARK 500 LYS A 227 -66.37 -91.06 REMARK 500 LYS A 263 -56.98 -11.53 REMARK 500 GLU A 291 150.86 -48.49 REMARK 500 SER A 436 86.29 -177.23 REMARK 500 ASN A 438 -90.76 -61.00 REMARK 500 ARG A 529 74.46 -104.21 REMARK 500 LYS A 625 16.60 -67.09 REMARK 500 ASP A 664 -152.63 -114.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PRO A 310 45.1 L L OUTSIDE RANGE REMARK 500 PHE A 437 45.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AJJ RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE IN-PLANE MEMBRANE REMARK 900 ANCHOR DOMAIN [1-28]OF THE MONOTOPIC NON REMARK 900 STRUCTURAL PROTEIN 5A (NS5A) OFBOVINE VIRAL REMARK 900 DIARRHEA VIRUS (BVDV) REMARK 900 RELATED ID: 2AJM RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE IN-PLANE MEMBRANE REMARK 900 ANCHOR DOMAIN [1-28]OF THE MONOTOPIC REMARK 900 NONSTRUCTURAL PROTEIN 5A (NS5A) FROM THEBOVINE REMARK 900 VIRAL DIARRHEA VIRUS (BVDV) REMARK 900 RELATED ID: 2AJN RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE IN-PLANE MEMBRANE REMARK 900 ANCHOR DOMAIN [1-28]OF THE MONOTOPIC REMARK 900 NONSTRUCTURAL PROTEIN 5A (NS5A) FROM THEBOVINE REMARK 900 VIRAL DIARRHEA VIRUS (BVDV) REMARK 900 RELATED ID: 2AJO RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE IN-PLANE MEMBRANE REMARK 900 ANCHOR DOMAIN [1-28]OF THE MONOTOPIC REMARK 900 NONSTRUCTURAL PROTEIN 5A (NS5A) FROM THEBOVINE REMARK 900 VIRAL DIARRHEA VIRUS (BVDV) REMARK 999 REMARK 999 SEQUENCE REMARK 999 ASN438 DUPLICATION DUE TO IN VITRO RNA RECOMBINATION DBREF 2CJQ A 1 438 UNP Q96662 POLG_BVDVC 3189 3626 DBREF 2CJQ A 438B 438B PDB 2CJQ 2CJQ 438B 438B DBREF 2CJQ A 439 719 UNP Q96662 POLG_BVDVC 3627 3907 SEQADV 2CJQ THR A 115 UNP Q96662 ILE 3303 CONFLICT SEQADV 2CJQ ILE A 148 UNP Q96662 SER 3336 CONFLICT SEQADV 2CJQ ASN A 348 UNP Q96662 ALA 3536 CONFLICT SEQRES 1 A 720 SER SER TRP PHE LEU GLN ALA THR ASN LYS GLN MET SER SEQRES 2 A 720 LEU THR PRO LEU PHE GLU GLU LEU LEU LEU ARG CYS PRO SEQRES 3 A 720 PRO LYS ILE LYS SER ASN LYS GLY HIS MET ALA SER ALA SEQRES 4 A 720 TYR GLN LEU ALA GLN GLY ASN TRP GLU PRO LEU ASP CYS SEQRES 5 A 720 GLY VAL HIS LEU GLY THR ILE PRO ALA ARG ARG VAL LYS SEQRES 6 A 720 ILE HIS PRO TYR GLU ALA TYR LEU LYS LEU LYS ASP LEU SEQRES 7 A 720 LEU GLU GLU GLU GLU LYS LYS PRO LYS CYS ARG ASP THR SEQRES 8 A 720 VAL ILE ARG GLU HIS ASN LYS TRP ILE LEU LYS LYS VAL SEQRES 9 A 720 ARG HIS GLN GLY ASN LEU ASN THR LYS LYS THR LEU ASN SEQRES 10 A 720 PRO GLY LYS LEU SER GLU GLN LEU ASP ARG GLU GLY HIS SEQRES 11 A 720 LYS ARG ASN ILE TYR ASN ASN GLN ILE GLY THR ILE MET SEQRES 12 A 720 THR GLU ALA GLY ILE ARG LEU GLU LYS LEU PRO VAL VAL SEQRES 13 A 720 ARG ALA GLN THR ASP THR LYS SER PHE HIS GLU ALA ILE SEQRES 14 A 720 ARG ASP LYS ILE ASP LYS ASN GLU ASN GLN GLN SER PRO SEQRES 15 A 720 GLY LEU HIS ASP LYS LEU LEU GLU ILE PHE HIS THR ILE SEQRES 16 A 720 ALA GLN PRO SER LEU ARG HIS THR TYR SER ASP VAL THR SEQRES 17 A 720 TRP GLU GLN LEU GLU ALA GLY VAL ASN ARG LYS GLY ALA SEQRES 18 A 720 ALA GLY PHE LEU GLU LYS LYS ASN VAL GLY GLU VAL LEU SEQRES 19 A 720 ASP SER GLU LYS HIS LEU VAL GLU GLN LEU ILE ARG ASP SEQRES 20 A 720 LEU LYS THR GLY ARG LYS ILE ARG TYR TYR GLU THR ALA SEQRES 21 A 720 ILE PRO LYS ASN GLU LYS ARG ASP VAL SER ASP ASP TRP SEQRES 22 A 720 GLN SER GLY ASP LEU VAL ASP GLU LYS LYS PRO ARG VAL SEQRES 23 A 720 ILE GLN TYR PRO GLU ALA LYS THR ARG LEU ALA ILE THR SEQRES 24 A 720 LYS VAL MET TYR ASN TRP VAL LYS GLN GLN PRO VAL VAL SEQRES 25 A 720 ILE PRO GLY TYR GLU GLY LYS THR PRO LEU PHE ASN ILE SEQRES 26 A 720 PHE ASN LYS VAL ARG LYS GLU TRP ASP LEU PHE ASN GLU SEQRES 27 A 720 PRO VAL ALA VAL SER PHE ASP THR LYS ASN TRP ASP THR SEQRES 28 A 720 GLN VAL THR SER ARG ASP LEU ARG LEU ILE GLY GLU ILE SEQRES 29 A 720 GLN LYS TYR TYR TYR ARG LYS GLU TRP HIS LYS PHE ILE SEQRES 30 A 720 ASP THR ILE THR ASP HIS MET VAL GLU VAL PRO VAL ILE SEQRES 31 A 720 THR ALA ASP GLY GLU VAL TYR ILE ARG ASN GLY GLN ARG SEQRES 32 A 720 GLY SER GLY GLN PRO ASP THR SER ALA GLY ASN SER MET SEQRES 33 A 720 LEU ASN VAL LEU THR MET MET TYR ALA PHE CYS GLU SER SEQRES 34 A 720 THR GLY VAL PRO TYR LYS SER PHE ASN ASN ARG VAL ALA SEQRES 35 A 720 ARG ILE HIS VAL CYS GLY ASP ASP GLY PHE LEU ILE THR SEQRES 36 A 720 GLU LYS GLY LEU GLY LEU LYS PHE ALA ASN ASN GLY MET SEQRES 37 A 720 GLN ILE LEU HIS GLU ALA GLY LYS PRO GLN LYS ILE THR SEQRES 38 A 720 GLU GLY GLU ARG MET LYS VAL ALA TYR ARG PHE GLU ASP SEQRES 39 A 720 ILE GLU PHE CYS SER HIS THR PRO VAL PRO VAL ARG TRP SEQRES 40 A 720 SER ASP ASN THR SER SER TYR MET ALA GLY ARG ASP THR SEQRES 41 A 720 ALA VAL ILE LEU SER LYS MET ALA THR ARG LEU ASP SER SEQRES 42 A 720 SER GLY GLU ARG GLY THR ILE ALA TYR GLU LYS ALA VAL SEQRES 43 A 720 ALA PHE SER PHE LEU LEU MET TYR SER TRP ASN PRO LEU SEQRES 44 A 720 VAL ARG ARG ILE CYS LEU LEU VAL LEU SER GLN GLN PRO SEQRES 45 A 720 GLU THR THR PRO SER THR GLN THR THR TYR TYR TYR LYS SEQRES 46 A 720 GLY ASP PRO ILE GLY ALA TYR LYS ASP VAL ILE GLY LYS SEQRES 47 A 720 ASN LEU CYS GLU LEU LYS ARG THR GLY PHE GLU LYS LEU SEQRES 48 A 720 ALA ASN LEU ASN LEU SER LEU SER THR LEU GLY ILE TRP SEQRES 49 A 720 SER LYS HIS THR SER LYS ARG ILE ILE GLN ASP CYS VAL SEQRES 50 A 720 THR ILE GLY LYS GLU GLU GLY ASN TRP LEU VAL ASN ALA SEQRES 51 A 720 ASP ARG LEU ILE SER SER LYS THR GLY HIS LEU TYR ILE SEQRES 52 A 720 PRO ASP LYS GLY TYR THR LEU GLN GLY LYS HIS TYR GLU SEQRES 53 A 720 GLN LEU GLN LEU GLN ALA ARG THR SER PRO VAL THR GLY SEQRES 54 A 720 VAL GLY THR GLU ARG TYR LYS LEU GLY PRO ILE VAL ASN SEQRES 55 A 720 LEU LEU LEU ARG ARG LEU ARG VAL LEU LEU MET ALA ALA SEQRES 56 A 720 VAL GLY ALA SER SER FORMUL 2 HOH *31(H2 O1) HELIX 1 1 ARG A 94 VAL A 104 5 11 HELIX 2 2 ASN A 136 GLY A 147 1 12 HELIX 3 3 SER A 164 ILE A 173 1 10 HELIX 4 4 GLY A 183 HIS A 193 1 11 HELIX 5 5 GLN A 197 ARG A 201 5 5 HELIX 6 6 THR A 208 ALA A 214 1 7 HELIX 7 7 ASN A 229 GLU A 237 1 9 HELIX 8 8 GLU A 237 GLY A 251 1 15 HELIX 9 9 GLU A 291 LYS A 307 1 17 HELIX 10 10 ASN A 324 ASP A 334 1 11 HELIX 11 11 ASN A 348 VAL A 353 1 6 HELIX 12 12 THR A 354 TYR A 369 1 16 HELIX 13 13 ARG A 370 GLU A 372 5 3 HELIX 14 14 TRP A 373 VAL A 385 1 13 HELIX 15 15 ASP A 409 GLY A 431 1 23 HELIX 16 16 LYS A 456 GLY A 474 1 19 HELIX 17 17 THR A 480 ARG A 484 5 5 HELIX 18 18 ARG A 490 ILE A 494 5 5 HELIX 19 19 ASP A 518 THR A 528 1 11 HELIX 20 20 THR A 538 SER A 554 1 17 HELIX 21 21 ASN A 556 LEU A 567 1 12 HELIX 22 22 ASP A 586 GLY A 596 1 11 HELIX 23 23 ASN A 598 CYS A 600 5 3 HELIX 24 24 GLY A 606 ASN A 614 1 9 HELIX 25 25 ASN A 614 LEU A 620 1 7 HELIX 26 26 HIS A 626 GLU A 641 1 16 HELIX 27 27 TRP A 645 ALA A 649 5 5 HELIX 28 28 ASP A 650 GLY A 658 1 9 SHEET 1 AA 5 LEU A 116 LYS A 120 0 SHEET 2 AA 5 GLU A 395 ASN A 400 -1 O VAL A 396 N GLY A 119 SHEET 3 AA 5 GLU A 386 THR A 391 -1 O VAL A 387 N ARG A 399 SHEET 4 AA 5 GLU A 258 PRO A 262 1 O GLU A 258 N ILE A 390 SHEET 5 AA 5 VAL A 286 PRO A 290 -1 O ILE A 287 N ILE A 261 SHEET 1 AB 4 ALA A 441 CYS A 446 0 SHEET 2 AB 4 ASP A 449 GLU A 455 -1 O ASP A 449 N CYS A 446 SHEET 3 AB 4 PRO A 339 PHE A 344 -1 O VAL A 340 N THR A 454 SHEET 4 AB 4 VAL A 487 ALA A 488 -1 O ALA A 488 N ALA A 341 SHEET 1 AC 3 SER A 511 GLY A 516 0 SHEET 2 AC 3 THR A 500 TRP A 506 -1 O THR A 500 N GLY A 516 SHEET 3 AC 3 LEU A 602 THR A 605 -1 N LYS A 603 O ARG A 505 SHEET 1 AD 2 TYR A 581 GLY A 585 0 SHEET 2 AD 2 GLY A 666 GLN A 670 -1 O TYR A 667 N LYS A 584 CRYST1 106.244 106.244 55.387 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009412 0.005434 0.000000 0.00000 SCALE2 0.000000 0.010868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018055 0.00000 MASTER 510 0 0 28 14 0 0 6 0 0 0 56 END