HEADER TRANSCRIPTION 23-MAY-05 2BSQ TITLE FITAB BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAFFICKING PROTEIN A; COMPND 3 CHAIN: E, F, G, H; COMPND 4 FRAGMENT: DNA-BINDING PROTEIN, RESIDUES 2-78; COMPND 5 SYNONYM: FITA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRAFFICKING PROTEIN B; COMPND 9 CHAIN: A, B, C, D; COMPND 10 FRAGMENT: PIN DOMAIN, RESIDUES 1-139; COMPND 11 SYNONYM: FITB; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: IR36, FORWARD STRAND; COMPND 16 CHAIN: I; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: IR36, REVERSE STRAND; COMPND 19 CHAIN: J SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 10 ORGANISM_TAXID: 485; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 18 ORGANISM_TAXID: 485; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 22 ORGANISM_TAXID: 485 KEYWDS TRANSCRIPTION, TRANSCRIPTION REGULATION COMPLEX, PIN KEYWDS 2 DOMAIN, RIBBON-HELIX-HELIX, DNA BINDING, HETERODIMER EXPDTA X-RAY DIFFRACTION AUTHOR K.MATTISON,J.S.WILBUR,M.SO,R.G.BRENNAN REVDAT 4 24-FEB-09 2BSQ 1 VERSN REVDAT 3 06-DEC-06 2BSQ 1 HEADER KEYWDS JRNL REVDAT 2 27-SEP-06 2BSQ 1 KEYWDS JRNL REVDAT 1 24-AUG-06 2BSQ 0 JRNL AUTH K.MATTISON,J.S.WILBUR,M.SO,R.G.BRENNAN JRNL TITL STRUCTURE OF FITAB FROM NEISSERIA GONORRHOEAE JRNL TITL 2 BOUND TO DNA REVEALS A TETRAMER OF TOXIN-ANTITOXIN JRNL TITL 3 HETERODIMERS CONTAINING PIN DOMAINS AND RIBBON- JRNL TITL 4 HELIX-HELIX MOTIFS. JRNL REF J.BIOL.CHEM. V. 281 37942 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16982615 JRNL DOI 10.1074/JBC.M605198200 REMARK 2 REMARK 2 RESOLUTION. 3.0 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.5 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1657362.62 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.0 REMARK 3 FREE R VALUE TEST SET COUNT : 3316 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4959 REMARK 3 BIN R VALUE (WORKING SET) : 0.309 REMARK 3 BIN FREE R VALUE : 0.376 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.5 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 518 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6395 REMARK 3 NUCLEIC ACID ATOMS : 1430 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.45 REMARK 3 B22 (A**2) : -17.53 REMARK 3 B33 (A**2) : 0.08 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -12.41 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.47 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.58 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.3 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.7 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.04 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.91 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.66 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.39 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.36 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.315881 REMARK 3 BSOL : 26.4919 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BSQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-05. REMARK 100 THE PDBE ID CODE IS EBI-24205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16708 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 81.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1YH4 REMARK 200 REMARK 200 REMARK: MODEL FILE NOT YET RELEASED-WILL BE IN SAME PAPER REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA):NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M ACETATE, PH 4.0 7.2 % PEG REMARK 280 20,000 7.2 % PEG 550 MME 0.26 M NA ACETATE, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.20150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 139 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASP 139 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN C, ASP 139 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN D, ASP 139 TO LEU REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS C 145 REMARK 465 HIS C 146 REMARK 465 HIS D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 465 HIS D 145 REMARK 465 HIS D 146 REMARK 465 ASN E 71 REMARK 465 THR E 72 REMARK 465 ASP E 73 REMARK 465 ASN E 74 REMARK 465 GLU E 75 REMARK 465 VAL E 76 REMARK 465 SER E 77 REMARK 465 LEU E 78 REMARK 465 VAL F 67 REMARK 465 ARG F 68 REMARK 465 GLY F 69 REMARK 465 ARG F 70 REMARK 465 ASN F 71 REMARK 465 THR F 72 REMARK 465 ASP F 73 REMARK 465 ASN F 74 REMARK 465 GLU F 75 REMARK 465 VAL F 76 REMARK 465 SER F 77 REMARK 465 LEU F 78 REMARK 465 ARG G 70 REMARK 465 ASN G 71 REMARK 465 THR G 72 REMARK 465 ASP G 73 REMARK 465 ASN G 74 REMARK 465 GLU G 75 REMARK 465 VAL G 76 REMARK 465 SER G 77 REMARK 465 LEU G 78 REMARK 465 ASP H 66 REMARK 465 VAL H 67 REMARK 465 ARG H 68 REMARK 465 GLY H 69 REMARK 465 ARG H 70 REMARK 465 ASN H 71 REMARK 465 THR H 72 REMARK 465 ASP H 73 REMARK 465 ASN H 74 REMARK 465 GLU H 75 REMARK 465 VAL H 76 REMARK 465 SER H 77 REMARK 465 LEU H 78 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 144 CA C O CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 141 CA C O CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 144 CA C O CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 141 CA C O CB CG ND1 CD2 CE1 NE2 REMARK 470 ARG E 70 CA C O CB CG CD NE CZ NH1 NH2 REMARK 470 ASP F 66 CA C O CB CG OD1 OD2 REMARK 470 GLY G 69 CA C O REMARK 470 GLU H 65 CA C O CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N1 DA I 21 - O4 5IU J 52 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG I 26 C5' - C4' - C3' ANGL. DEV. = -7.9 DEGREES REMARK 500 DT I 35 O3' - P - OP1 ANGL. DEV. = 18.0 DEGREES REMARK 500 DT I 35 O3' - P - OP2 ANGL. DEV. = 18.0 DEGREES REMARK 500 DT I 35 C3' - O3' - P ANGL. DEV. = -11.7 DEGREES REMARK 500 DA J 53 O3' - P - O5' ANGL. DEV. = 14.1 DEGREES REMARK 500 DA J 53 C3' - O3' - P ANGL. DEV. = 18.4 DEGREES REMARK 500 DA J 63 C5' - C4' - C3' ANGL. DEV. = -7.4 DEGREES REMARK 500 DC J 67 C5' - C4' - C3' ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 15 -70.08 -48.47 REMARK 500 GLN A 16 71.57 -114.66 REMARK 500 GLU A 31 -9.08 -48.58 REMARK 500 SER A 66 -70.99 -122.22 REMARK 500 ILE A 67 -91.74 -47.43 REMARK 500 THR A 95 40.93 -79.11 REMARK 500 HIS A 141 -53.21 -123.90 REMARK 500 HIS A 142 83.28 39.78 REMARK 500 GLN B 16 60.80 -116.86 REMARK 500 ILE B 67 -71.47 -64.45 REMARK 500 HIS B 138 -162.75 -112.29 REMARK 500 LEU B 139 -160.46 -113.31 REMARK 500 LEU C 30 -53.32 -27.55 REMARK 500 SER C 66 -60.14 -123.66 REMARK 500 ILE C 67 -86.59 -62.14 REMARK 500 ASP C 122 63.60 -112.18 REMARK 500 PHE C 126 -30.65 -33.57 REMARK 500 HIS C 141 -145.55 -122.42 REMARK 500 GLN D 16 70.30 -106.73 REMARK 500 LEU D 30 -46.70 -26.39 REMARK 500 ILE D 67 -71.26 -90.12 REMARK 500 THR D 95 32.35 -85.70 REMARK 500 SER D 115 78.64 54.12 REMARK 500 ASP D 122 55.53 -104.07 REMARK 500 PRO D 136 7.90 -67.33 REMARK 500 HIS D 138 -167.89 -104.62 REMARK 500 SER E 10 131.74 -38.30 REMARK 500 GLN E 44 80.82 -67.45 REMARK 500 VAL E 67 83.90 59.27 REMARK 500 ALA F 23 -3.03 -56.17 REMARK 500 ARG F 47 77.37 -101.22 REMARK 500 GLN G 44 81.00 -61.77 REMARK 500 ASP G 66 -81.93 -53.08 REMARK 500 VAL G 67 87.33 64.10 REMARK 500 SER H 10 104.21 -43.01 REMARK 500 GLU H 11 98.80 -64.76 REMARK 500 ALA H 12 -50.72 154.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT I 28 0.07 SIDE CHAIN REMARK 500 DT J 61 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YH4 RELATED DB: PDB REMARK 900 FITAB DBREF 2BSQ A 1 139 UNP Q5F882 Q5F882_NEIG1 1 139 DBREF 2BSQ A 140 146 PDB 2BSQ 2BSQ 140 146 DBREF 2BSQ B 1 139 UNP Q5F882 Q5F882_NEIG1 1 139 DBREF 2BSQ B 140 146 PDB 2BSQ 2BSQ 140 146 DBREF 2BSQ C 1 139 UNP Q5F882 Q5F882_NEIG1 1 139 DBREF 2BSQ C 140 146 PDB 2BSQ 2BSQ 140 146 DBREF 2BSQ D 1 139 UNP Q5F882 Q5F882_NEIG1 1 139 DBREF 2BSQ D 140 146 PDB 2BSQ 2BSQ 140 146 DBREF 2BSQ E 2 78 UNP Q5F881 Q5F881_NEIG1 2 78 DBREF 2BSQ F 2 78 UNP Q5F881 Q5F881_NEIG1 2 78 DBREF 2BSQ G 2 78 UNP Q5F881 Q5F881_NEIG1 2 78 DBREF 2BSQ H 2 78 UNP Q5F881 Q5F881_NEIG1 2 78 DBREF 2BSQ I 1 36 PDB 2BSQ 2BSQ 1 36 DBREF 2BSQ J 37 72 PDB 2BSQ 2BSQ 37 72 SEQADV 2BSQ LEU A 139 UNP Q5F882 ASP 139 ENGINEERED MUTATION SEQADV 2BSQ LEU B 139 UNP Q5F882 ASP 139 ENGINEERED MUTATION SEQADV 2BSQ LEU C 139 UNP Q5F882 ASP 139 ENGINEERED MUTATION SEQADV 2BSQ LEU D 139 UNP Q5F882 ASP 139 ENGINEERED MUTATION SEQRES 1 A 146 MET ILE LEU LEU ASP THR ASN VAL ILE SER GLU PRO LEU SEQRES 2 A 146 ARG PRO GLN PRO ASN GLU ARG VAL VAL ALA TRP LEU ASP SEQRES 3 A 146 SER LEU ILE LEU GLU ASP VAL TYR LEU SER ALA ILE THR SEQRES 4 A 146 VAL ALA GLU MET ARG LEU GLY VAL ALA LEU LEU LEU ASN SEQRES 5 A 146 GLY LYS LYS LYS ASN VAL LEU HIS GLU ARG MET GLU GLN SEQRES 6 A 146 SER ILE LEU PRO LEU PHE ALA GLY ARG ILE LEU PRO PHE SEQRES 7 A 146 ASP GLU PRO VAL ALA ALA ILE TYR ALA GLN ILE ARG SER SEQRES 8 A 146 TYR ALA LYS THR HIS GLY LYS GLU ILE ALA ALA ALA ASP SEQRES 9 A 146 GLY TYR ILE ALA ALA THR ALA LYS GLN HIS SER MET THR SEQRES 10 A 146 VAL ALA THR ARG ASP THR GLY SER PHE PHE ALA ALA ASP SEQRES 11 A 146 VAL ALA VAL PHE ASN PRO TRP HIS LEU GLU HIS HIS HIS SEQRES 12 A 146 HIS HIS HIS SEQRES 1 B 146 MET ILE LEU LEU ASP THR ASN VAL ILE SER GLU PRO LEU SEQRES 2 B 146 ARG PRO GLN PRO ASN GLU ARG VAL VAL ALA TRP LEU ASP SEQRES 3 B 146 SER LEU ILE LEU GLU ASP VAL TYR LEU SER ALA ILE THR SEQRES 4 B 146 VAL ALA GLU MET ARG LEU GLY VAL ALA LEU LEU LEU ASN SEQRES 5 B 146 GLY LYS LYS LYS ASN VAL LEU HIS GLU ARG MET GLU GLN SEQRES 6 B 146 SER ILE LEU PRO LEU PHE ALA GLY ARG ILE LEU PRO PHE SEQRES 7 B 146 ASP GLU PRO VAL ALA ALA ILE TYR ALA GLN ILE ARG SER SEQRES 8 B 146 TYR ALA LYS THR HIS GLY LYS GLU ILE ALA ALA ALA ASP SEQRES 9 B 146 GLY TYR ILE ALA ALA THR ALA LYS GLN HIS SER MET THR SEQRES 10 B 146 VAL ALA THR ARG ASP THR GLY SER PHE PHE ALA ALA ASP SEQRES 11 B 146 VAL ALA VAL PHE ASN PRO TRP HIS LEU GLU HIS HIS HIS SEQRES 12 B 146 HIS HIS HIS SEQRES 1 C 146 MET ILE LEU LEU ASP THR ASN VAL ILE SER GLU PRO LEU SEQRES 2 C 146 ARG PRO GLN PRO ASN GLU ARG VAL VAL ALA TRP LEU ASP SEQRES 3 C 146 SER LEU ILE LEU GLU ASP VAL TYR LEU SER ALA ILE THR SEQRES 4 C 146 VAL ALA GLU MET ARG LEU GLY VAL ALA LEU LEU LEU ASN SEQRES 5 C 146 GLY LYS LYS LYS ASN VAL LEU HIS GLU ARG MET GLU GLN SEQRES 6 C 146 SER ILE LEU PRO LEU PHE ALA GLY ARG ILE LEU PRO PHE SEQRES 7 C 146 ASP GLU PRO VAL ALA ALA ILE TYR ALA GLN ILE ARG SER SEQRES 8 C 146 TYR ALA LYS THR HIS GLY LYS GLU ILE ALA ALA ALA ASP SEQRES 9 C 146 GLY TYR ILE ALA ALA THR ALA LYS GLN HIS SER MET THR SEQRES 10 C 146 VAL ALA THR ARG ASP THR GLY SER PHE PHE ALA ALA ASP SEQRES 11 C 146 VAL ALA VAL PHE ASN PRO TRP HIS LEU GLU HIS HIS HIS SEQRES 12 C 146 HIS HIS HIS SEQRES 1 D 146 MET ILE LEU LEU ASP THR ASN VAL ILE SER GLU PRO LEU SEQRES 2 D 146 ARG PRO GLN PRO ASN GLU ARG VAL VAL ALA TRP LEU ASP SEQRES 3 D 146 SER LEU ILE LEU GLU ASP VAL TYR LEU SER ALA ILE THR SEQRES 4 D 146 VAL ALA GLU MET ARG LEU GLY VAL ALA LEU LEU LEU ASN SEQRES 5 D 146 GLY LYS LYS LYS ASN VAL LEU HIS GLU ARG MET GLU GLN SEQRES 6 D 146 SER ILE LEU PRO LEU PHE ALA GLY ARG ILE LEU PRO PHE SEQRES 7 D 146 ASP GLU PRO VAL ALA ALA ILE TYR ALA GLN ILE ARG SER SEQRES 8 D 146 TYR ALA LYS THR HIS GLY LYS GLU ILE ALA ALA ALA ASP SEQRES 9 D 146 GLY TYR ILE ALA ALA THR ALA LYS GLN HIS SER MET THR SEQRES 10 D 146 VAL ALA THR ARG ASP THR GLY SER PHE PHE ALA ALA ASP SEQRES 11 D 146 VAL ALA VAL PHE ASN PRO TRP HIS LEU GLU HIS HIS HIS SEQRES 12 D 146 HIS HIS HIS SEQRES 1 E 77 ALA SER VAL VAL ILE ARG ASN LEU SER GLU ALA THR HIS SEQRES 2 E 77 ASN ALA ILE LYS PHE ARG ALA ARG ALA ALA GLY ARG SER SEQRES 3 E 77 THR GLU ALA GLU ILE ARG LEU ILE LEU ASP ASN ILE ALA SEQRES 4 E 77 LYS ALA GLN GLN THR VAL ARG LEU GLY SER MET LEU ALA SEQRES 5 E 77 SER ILE GLY GLN GLU ILE GLY GLY VAL GLU LEU GLU ASP SEQRES 6 E 77 VAL ARG GLY ARG ASN THR ASP ASN GLU VAL SER LEU SEQRES 1 F 77 ALA SER VAL VAL ILE ARG ASN LEU SER GLU ALA THR HIS SEQRES 2 F 77 ASN ALA ILE LYS PHE ARG ALA ARG ALA ALA GLY ARG SER SEQRES 3 F 77 THR GLU ALA GLU ILE ARG LEU ILE LEU ASP ASN ILE ALA SEQRES 4 F 77 LYS ALA GLN GLN THR VAL ARG LEU GLY SER MET LEU ALA SEQRES 5 F 77 SER ILE GLY GLN GLU ILE GLY GLY VAL GLU LEU GLU ASP SEQRES 6 F 77 VAL ARG GLY ARG ASN THR ASP ASN GLU VAL SER LEU SEQRES 1 G 77 ALA SER VAL VAL ILE ARG ASN LEU SER GLU ALA THR HIS SEQRES 2 G 77 ASN ALA ILE LYS PHE ARG ALA ARG ALA ALA GLY ARG SER SEQRES 3 G 77 THR GLU ALA GLU ILE ARG LEU ILE LEU ASP ASN ILE ALA SEQRES 4 G 77 LYS ALA GLN GLN THR VAL ARG LEU GLY SER MET LEU ALA SEQRES 5 G 77 SER ILE GLY GLN GLU ILE GLY GLY VAL GLU LEU GLU ASP SEQRES 6 G 77 VAL ARG GLY ARG ASN THR ASP ASN GLU VAL SER LEU SEQRES 1 H 77 ALA SER VAL VAL ILE ARG ASN LEU SER GLU ALA THR HIS SEQRES 2 H 77 ASN ALA ILE LYS PHE ARG ALA ARG ALA ALA GLY ARG SER SEQRES 3 H 77 THR GLU ALA GLU ILE ARG LEU ILE LEU ASP ASN ILE ALA SEQRES 4 H 77 LYS ALA GLN GLN THR VAL ARG LEU GLY SER MET LEU ALA SEQRES 5 H 77 SER ILE GLY GLN GLU ILE GLY GLY VAL GLU LEU GLU ASP SEQRES 6 H 77 VAL ARG GLY ARG ASN THR ASP ASN GLU VAL SER LEU SEQRES 1 I 36 DA DG DA DT DT DG DC DT DA DT DC DA DT SEQRES 2 I 36 DT DT DT DT DT DT DT DA DT DT DT DT DG SEQRES 3 I 36 DA DT DA DG DC DA DT 5IU DT DG SEQRES 1 J 36 DC DA DA DA DT DG DC DT DA DT DC DA DA SEQRES 2 J 36 DA DA 5IU DA DA DA DA DA DA DA DA DT DG SEQRES 3 J 36 DA DT DA DG DC DA DA DT DC DT MODRES 2BSQ 5IU I 34 U 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 2BSQ 5IU J 52 U 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HET 5IU I 34 20 HET 5IU J 52 20 HETNAM 5IU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE FORMUL 1 5IU 2() FORMUL 11 HOH *45(H2 O1) HELIX 1 1 ASP A 5 GLU A 11 1 7 HELIX 2 2 PRO A 12 ARG A 14 5 3 HELIX 3 3 ASN A 18 SER A 27 1 10 HELIX 4 4 ILE A 29 GLU A 31 5 3 HELIX 5 5 ALA A 37 LEU A 49 1 13 HELIX 6 6 GLY A 53 SER A 66 1 14 HELIX 7 7 ILE A 67 ALA A 72 5 6 HELIX 8 8 ASP A 79 THR A 95 1 17 HELIX 9 9 ALA A 101 HIS A 114 1 14 HELIX 10 10 ASP A 122 PHE A 127 1 6 HELIX 11 11 ALA A 128 ASP A 130 5 3 HELIX 12 12 ASP B 5 SER B 10 1 6 HELIX 13 13 ASN B 18 ASP B 26 1 9 HELIX 14 14 ILE B 29 GLU B 31 5 3 HELIX 15 15 ALA B 37 LEU B 49 1 13 HELIX 16 16 GLY B 53 SER B 66 1 14 HELIX 17 17 ILE B 67 ALA B 72 5 6 HELIX 18 18 ASP B 79 THR B 95 1 17 HELIX 19 19 ALA B 101 HIS B 114 1 14 HELIX 20 20 ASP B 122 ALA B 129 1 8 HELIX 21 21 ASP C 5 GLU C 11 1 7 HELIX 22 22 PRO C 12 ARG C 14 5 3 HELIX 23 23 ASN C 18 SER C 27 1 10 HELIX 24 24 ILE C 29 GLU C 31 5 3 HELIX 25 25 ALA C 37 LEU C 49 1 13 HELIX 26 26 GLY C 53 SER C 66 1 14 HELIX 27 27 ILE C 67 ALA C 72 5 6 HELIX 28 28 ASP C 79 THR C 95 1 17 HELIX 29 29 ALA C 101 HIS C 114 1 14 HELIX 30 30 ASP C 122 PHE C 127 1 6 HELIX 31 31 ALA C 128 ASP C 130 5 3 HELIX 32 32 ASP D 5 GLU D 11 1 7 HELIX 33 33 PRO D 12 ARG D 14 5 3 HELIX 34 34 ASN D 18 ASP D 26 1 9 HELIX 35 35 ILE D 29 GLU D 31 5 3 HELIX 36 36 ALA D 37 LEU D 49 1 13 HELIX 37 37 GLY D 53 SER D 66 1 14 HELIX 38 38 ILE D 67 PHE D 71 5 5 HELIX 39 39 ASP D 79 THR D 95 1 17 HELIX 40 40 ALA D 101 SER D 115 1 15 HELIX 41 41 ASP D 122 ALA D 129 1 8 HELIX 42 42 SER E 10 ALA E 24 1 15 HELIX 43 43 SER E 27 GLN E 44 1 18 HELIX 44 44 ARG E 47 ILE E 59 1 13 HELIX 45 45 SER F 10 ALA F 23 1 14 HELIX 46 46 SER F 27 GLN F 44 1 18 HELIX 47 47 ARG F 47 ILE F 59 1 13 HELIX 48 48 SER G 10 ALA G 24 1 15 HELIX 49 49 SER G 27 GLN G 44 1 18 HELIX 50 50 ARG G 47 GLY G 60 1 14 HELIX 51 51 ALA H 12 ALA H 24 1 13 HELIX 52 52 SER H 27 GLN H 44 1 18 HELIX 53 53 ARG H 47 ILE H 59 1 13 SHEET 1 AA 5 ILE A 75 LEU A 76 0 SHEET 2 AA 5 VAL A 33 SER A 36 1 O LEU A 35 N LEU A 76 SHEET 3 AA 5 ILE A 2 LEU A 4 1 O ILE A 2 N TYR A 34 SHEET 4 AA 5 THR A 117 ALA A 119 1 O THR A 117 N LEU A 3 SHEET 5 AA 5 VAL A 133 PHE A 134 1 N PHE A 134 O VAL A 118 SHEET 1 BA 5 ILE B 75 LEU B 76 0 SHEET 2 BA 5 VAL B 33 SER B 36 1 O LEU B 35 N LEU B 76 SHEET 3 BA 5 ILE B 2 LEU B 4 1 O ILE B 2 N TYR B 34 SHEET 4 BA 5 THR B 117 ALA B 119 1 O THR B 117 N LEU B 3 SHEET 5 BA 5 VAL B 133 PHE B 134 1 N PHE B 134 O VAL B 118 SHEET 1 CA 5 ILE C 75 LEU C 76 0 SHEET 2 CA 5 VAL C 33 SER C 36 1 O LEU C 35 N LEU C 76 SHEET 3 CA 5 ILE C 2 LEU C 4 1 O ILE C 2 N TYR C 34 SHEET 4 CA 5 THR C 117 ALA C 119 1 O THR C 117 N LEU C 3 SHEET 5 CA 5 VAL C 133 PHE C 134 1 N PHE C 134 O VAL C 118 SHEET 1 DA 5 ILE D 75 LEU D 76 0 SHEET 2 DA 5 VAL D 33 SER D 36 1 O LEU D 35 N LEU D 76 SHEET 3 DA 5 ILE D 2 LEU D 4 1 O ILE D 2 N TYR D 34 SHEET 4 DA 5 THR D 117 ALA D 119 1 O THR D 117 N LEU D 3 SHEET 5 DA 5 VAL D 133 PHE D 134 1 N PHE D 134 O VAL D 118 SHEET 1 EA 2 VAL E 4 ILE E 6 0 SHEET 2 EA 2 VAL H 4 ILE H 6 -1 O VAL H 4 N ILE E 6 SHEET 1 FA 2 VAL F 4 ILE F 6 0 SHEET 2 FA 2 VAL G 4 ILE G 6 -1 O VAL G 4 N ILE F 6 LINK O3' DT I 33 P 5IU I 34 1555 1555 1.60 LINK O3' 5IU I 34 P DT I 35 1555 1555 1.61 LINK O3' DA J 51 P 5IU J 52 1555 1555 1.59 LINK O3' 5IU J 52 P DA J 53 1555 1555 1.60 CRYST1 75.040 82.403 135.503 90.00 94.19 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013326 0.000000 0.000977 0.00000 SCALE2 0.000000 0.012136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007400 0.00000 MASTER 414 0 2 53 24 0 0 6 0 0 0 78 END