HEADER LYASE 11-MAY-05 2BRV TITLE CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE HYALURONATE TITLE 2 LYASE FROM 70PERCENT SATURATED MALONATE. CAVEAT 2BRV THR X 632 C-BETA WRONG HAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYALURONATE LYASE; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: HYALURONIDASE, HYASE; COMPND 5 EC: 4.2.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS (ALFA5/ALFA5) BARREL, CELL WALL, LYASE, PEPTIDOGLYCAN-ANCHOR EXPDTA X-RAY DIFFRACTION AUTHOR D.J.RIGDEN,M.J.JEDRZEJAS REVDAT 4 22-APR-15 2BRV 1 CAVEAT REMARK VERSN SEQADV REVDAT 4 2 HETSYN MASTER REVDAT 3 24-FEB-09 2BRV 1 VERSN REVDAT 2 26-APR-06 2BRV 1 JRNL REVDAT 1 05-APR-06 2BRV 0 JRNL AUTH D.J.RIGDEN,J.E.LITTLEJOHN,H.V.JOSHI,B.L.DE GROOT, JRNL AUTH 2 M.J.JEDRZEJAS JRNL TITL ALTERNATE STRUCTURAL CONFORMATIONS OF JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE HYALURONAN LYASE: JRNL TITL 3 INSIGHTS INTO ENZYME FLEXIBILITY AND UNDERLYING JRNL TITL 4 MOLECULAR MECHANISM OF ACTION. JRNL REF J.MOL.BIOL. V. 358 1165 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16569416 JRNL DOI 10.1016/J.JMB.2006.02.066 REMARK 2 REMARK 2 RESOLUTION. 3.3 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 11046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.302 REMARK 3 R VALUE (WORKING SET) : 0.301 REMARK 3 FREE R VALUE : 0.327 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 578 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1446 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.5130 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.5230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.52000 REMARK 3 B22 (A**2) : -5.77000 REMARK 3 B33 (A**2) : 4.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 9.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.810 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.881 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.840 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5887 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5070 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7943 ; 1.080 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11901 ; 3.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 712 ; 6.902 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 289 ;42.236 ;25.260 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1058 ;24.471 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;21.066 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 850 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6562 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1162 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1448 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5598 ; 0.220 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2847 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2957 ; 0.111 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 129 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 105 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3545 ; 0.466 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5725 ; 0.875 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2342 ; 0.700 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2218 ; 1.331 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2BRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-05. REMARK 100 THE PDBE ID CODE IS EBI-23887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD INSTRUMENTS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11046 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 69.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EGU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.86100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.52600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.86100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.52600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA X 168 REMARK 465 SER X 169 REMARK 465 SER X 217 REMARK 465 SER X 218 REMARK 465 GLN X 219 REMARK 465 ALA X 220 REMARK 465 ASP X 221 REMARK 465 ARG X 222 REMARK 465 ILE X 223 REMARK 465 TYR X 224 REMARK 465 GLN X 892 REMARK 465 HIS X 893 REMARK 465 HIS X 894 REMARK 465 HIS X 895 REMARK 465 HIS X 896 REMARK 465 HIS X 897 REMARK 465 HIS X 898 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR X 632 CA - CB - CG2 ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X 186 -57.52 -126.21 REMARK 500 TYR X 190 55.08 -95.89 REMARK 500 LYS X 208 -78.38 -66.61 REMARK 500 VAL X 209 -53.07 -27.28 REMARK 500 SER X 212 -89.70 -72.96 REMARK 500 LEU X 213 -51.85 -14.75 REMARK 500 SER X 214 49.94 -88.32 REMARK 500 SER X 215 -24.82 -176.99 REMARK 500 ILE X 296 -90.68 -122.83 REMARK 500 ASP X 331 104.68 -162.97 REMARK 500 ASN X 341 49.94 -164.40 REMARK 500 PRO X 342 -126.15 -21.58 REMARK 500 PHE X 343 164.39 151.11 REMARK 500 LYS X 365 45.75 28.49 REMARK 500 GLU X 369 -32.16 -39.50 REMARK 500 GLN X 386 124.10 174.67 REMARK 500 ASP X 398 144.79 -172.50 REMARK 500 HIS X 399 61.78 71.36 REMARK 500 THR X 400 -63.86 74.87 REMARK 500 ASN X 401 52.48 -165.42 REMARK 500 TYR X 404 24.83 -144.83 REMARK 500 ALA X 407 -55.27 -137.83 REMARK 500 VAL X 422 -78.29 -71.46 REMARK 500 ILE X 423 -41.66 -25.74 REMARK 500 LYS X 432 3.43 -66.51 REMARK 500 MET X 488 39.41 -88.04 REMARK 500 LYS X 518 42.98 -107.45 REMARK 500 THR X 519 131.42 -175.06 REMARK 500 SER X 570 -160.82 -122.12 REMARK 500 ASN X 580 39.02 35.85 REMARK 500 ASN X 583 76.84 71.17 REMARK 500 ASN X 598 -155.05 -93.55 REMARK 500 ASP X 648 -8.58 -55.01 REMARK 500 ALA X 649 22.17 -142.84 REMARK 500 TRP X 660 -57.98 0.78 REMARK 500 LYS X 674 -90.86 75.38 REMARK 500 ASP X 675 42.61 -108.87 REMARK 500 LYS X 676 159.44 176.60 REMARK 500 THR X 687 52.54 -101.83 REMARK 500 ASP X 713 -7.75 93.27 REMARK 500 GLU X 727 78.91 63.57 REMARK 500 LYS X 749 105.18 -28.55 REMARK 500 LYS X 756 86.57 -162.40 REMARK 500 ASN X 767 108.21 -168.60 REMARK 500 ASN X 800 24.40 49.10 REMARK 500 ASN X 820 53.39 -150.83 REMARK 500 SER X 848 18.34 51.36 REMARK 500 ASN X 874 98.29 -68.58 REMARK 500 GLN X 878 66.47 14.92 REMARK 500 PHE X 887 123.68 -172.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR X 632 -9.9 R S C-BETA WRONG HAND REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA X1892 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA X1893 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA X1894 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA X1895 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA X1896 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA X1897 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C82 RELATED DB: PDB REMARK 900 MECHANISM OF HYALURONAN BINDING AND REMARK 900 DEGRADATION: STRUCTURE OF STREPTOCOCCUS REMARK 900 PNEUMONIAE HYALURONATE LYASE IN COMPLEX WITH REMARK 900 HYALURONIC ACID DISACCHARIDE AT 1.7 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1EGU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE REMARK 900 HYALURONATE LYASE AT 1.56 A RESOLUTION REMARK 900 RELATED ID: 1F9G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE REMARK 900 HYALURONATELYASE COCRYSTALLIZED WITH ASCORBIC REMARK 900 ACID REMARK 900 RELATED ID: 1LOH RELATED DB: PDB REMARK 900 STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE IN REMARK 900 COMPLEX WITHHEXASACCHARIDE HYALURONAN SUBSTRATE REMARK 900 RELATED ID: 1LXK RELATED DB: PDB REMARK 900 STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE IN REMARK 900 COMPLEX WITHTETRASACCHARIDE HYALURONAN SUBSTRATE REMARK 900 RELATED ID: 1N7N RELATED DB: PDB REMARK 900 STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE W292A REMARK 900 MUTANT REMARK 900 RELATED ID: 1N7O RELATED DB: PDB REMARK 900 STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE F343V REMARK 900 MUTANT REMARK 900 RELATED ID: 1N7P RELATED DB: PDB REMARK 900 STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE W292A REMARK 900 /F343VDOUBLE MUTANT REMARK 900 RELATED ID: 1N7Q RELATED DB: PDB REMARK 900 STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASE W291A REMARK 900 /W292ADOUBLE MUTANT COMPLEX WITH HYALURONAN REMARK 900 HEXASACCHRIDE REMARK 900 RELATED ID: 1N7R RELATED DB: PDB REMARK 900 STREPTOCOCCUS PNEUMONIAE HYALURONATE LYASEW291A/ REMARK 900 W292A/F343V MUTANT COMPLEX WITH REMARK 900 HEXASACCHARIDEHYALURONAN REMARK 900 RELATED ID: 1OJM RELATED DB: PDB REMARK 900 SPECIFICITY AND MECHANISM OF STREPTOCOCCUS REMARK 900 PNEUMONIAE HYALURONATE LYASE: COMPLEX WITH REMARK 900 UNSULPHATED CHONDROITIN DISACCHARIDE REMARK 900 RELATED ID: 1OJN RELATED DB: PDB REMARK 900 SPECIFICITY AND MECHANISM OF STREPTOCOCCUS REMARK 900 PNEUMONIAE HYALURONATE LYASE: COMPLEX OF THE REMARK 900 TYR408PHE MUTANT WITH 6-SULPHATED CHONDROITIN REMARK 900 DISACCHARIDE REMARK 900 RELATED ID: 1OJO RELATED DB: PDB REMARK 900 SPECIFICITY AND MECHANISM OF STREPTOCOCCUS REMARK 900 PNEUMONIAE HYALURONATE LYASE: COMPLEX OF THE REMARK 900 TYR408PHE MUTANT WITH 4-SULPHATED CHONDROITIN REMARK 900 DISACCHARIDE REMARK 900 RELATED ID: 1OJP RELATED DB: PDB REMARK 900 SPECIFICITY AND MECHANISM OF STREPTOCOCCUS REMARK 900 PNEUMONIAE HYALURONATE LYASE: COMPLEX WITH 6- REMARK 900 SULPHATED CHONDROITIN DISACCHARIDE REMARK 900 RELATED ID: 1W3Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S. PNEUMONIAE HYALURONATE REMARK 900 LYASE IN COMPLEX WITH PALMITOYL-VITAMIN C REMARK 900 RELATED ID: 2BRP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S. PNEUMONIAE HYALURONATE REMARK 900 LYASE IN COMPLEX WITH W249B REMARK 900 RELATED ID: 2BRW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE REMARK 900 HYALURONATE LYASE FROM 30PERCENT PEGMME. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SIX RESIDUE HIS TAG (RESIDUES X893-X898) REMARK 999 WERE NOT SEEN IN THE DENSITY. REMARK 999 THE UNIPROT ENTRY INCLUDES REFERENCES DETAILING REMARK 999 SEVERAL SEQUENCE CONFLICTS. DBREF 2BRV X 168 892 UNP Q54873 HYSA_STRPN 285 1009 DBREF 2BRV X 893 898 PDB 2BRV 2BRV 893 898 SEQADV 2BRV THR X 173 UNP Q54873 ALA 290 SEE REMARK 999 SEQADV 2BRV ASP X 196 UNP Q54873 GLU 313 SEE REMARK 999 SEQADV 2BRV ARG X 496 UNP Q54873 CYS 613 SEE REMARK 999 SEQADV 2BRV THR X 541 UNP Q54873 PRO 658 SEE REMARK 999 SEQADV 2BRV SER X 704 UNP Q54873 GLY 821 SEE REMARK 999 SEQADV 2BRV SER X 736 UNP Q54873 PHE 853 SEE REMARK 999 SEQADV 2BRV GLY X 790 UNP Q54873 ARG 907 SEE REMARK 999 SEQRES 1 X 731 ALA SER VAL LYS ASP THR TYR THR ASP ARG LEU ASP ASP SEQRES 2 X 731 TRP ASN GLY ILE ILE ALA GLY ASN GLN TYR TYR ASP SER SEQRES 3 X 731 LYS ASN ASP GLN MET ALA LYS LEU ASN GLN GLU LEU GLU SEQRES 4 X 731 GLY LYS VAL ALA ASP SER LEU SER SER ILE SER SER GLN SEQRES 5 X 731 ALA ASP ARG ILE TYR LEU TRP GLU LYS PHE SER ASN TYR SEQRES 6 X 731 LYS THR SER ALA ASN LEU THR ALA THR TYR ARG LYS LEU SEQRES 7 X 731 GLU GLU MET ALA LYS GLN VAL THR ASN PRO SER SER ARG SEQRES 8 X 731 TYR TYR GLN ASP GLU THR VAL VAL ARG THR VAL ARG ASP SEQRES 9 X 731 SER MET GLU TRP MET HIS LYS HIS VAL TYR ASN SER GLU SEQRES 10 X 731 LYS SER ILE VAL GLY ASN TRP TRP ASP TYR GLU ILE GLY SEQRES 11 X 731 THR PRO ARG ALA ILE ASN ASN THR LEU SER LEU MET LYS SEQRES 12 X 731 GLU TYR PHE SER ASP GLU GLU ILE LYS LYS TYR THR ASP SEQRES 13 X 731 VAL ILE GLU LYS PHE VAL PRO ASP PRO GLU HIS PHE ARG SEQRES 14 X 731 LYS THR THR ASP ASN PRO PHE LYS ALA LEU GLY GLY ASN SEQRES 15 X 731 LEU VAL ASP MET GLY ARG VAL LYS VAL ILE ALA GLY LEU SEQRES 16 X 731 LEU ARG LYS ASP ASP GLN GLU ILE SER SER THR ILE ARG SEQRES 17 X 731 SER ILE GLU GLN VAL PHE LYS LEU VAL ASP GLN GLY GLU SEQRES 18 X 731 GLY PHE TYR GLN ASP GLY SER TYR ILE ASP HIS THR ASN SEQRES 19 X 731 VAL ALA TYR THR GLY ALA TYR GLY ASN VAL LEU ILE ASP SEQRES 20 X 731 GLY LEU SER GLN LEU LEU PRO VAL ILE GLN LYS THR LYS SEQRES 21 X 731 ASN PRO ILE ASP LYS ASP LYS MET GLN THR MET TYR HIS SEQRES 22 X 731 TRP ILE ASP LYS SER PHE ALA PRO LEU LEU VAL ASN GLY SEQRES 23 X 731 GLU LEU MET ASP MET SER ARG GLY ARG SER ILE SER ARG SEQRES 24 X 731 ALA ASN SER GLU GLY HIS VAL ALA ALA VAL GLU VAL LEU SEQRES 25 X 731 ARG GLY ILE HIS ARG ILE ALA ASP MET SER GLU GLY GLU SEQRES 26 X 731 THR LYS GLN ARG LEU GLN SER LEU VAL LYS THR ILE VAL SEQRES 27 X 731 GLN SER ASP SER TYR TYR ASP VAL PHE LYS ASN LEU LYS SEQRES 28 X 731 THR TYR LYS ASP ILE SER LEU MET GLN SER LEU LEU SER SEQRES 29 X 731 ASP ALA GLY VAL ALA SER VAL PRO ARG THR SER TYR LEU SEQRES 30 X 731 SER ALA PHE ASN LYS MET ASP LYS THR ALA MET TYR ASN SEQRES 31 X 731 ALA GLU LYS GLY PHE GLY PHE GLY LEU SER LEU PHE SER SEQRES 32 X 731 SER ARG THR LEU ASN TYR GLU HIS MET ASN LYS GLU ASN SEQRES 33 X 731 LYS ARG GLY TRP TYR THR SER ASP GLY MET PHE TYR LEU SEQRES 34 X 731 TYR ASN GLY ASP LEU SER HIS TYR SER ASP GLY TYR TRP SEQRES 35 X 731 PRO THR VAL ASN PRO TYR LYS MET PRO GLY THR THR GLU SEQRES 36 X 731 THR ASP ALA LYS ARG ALA ASP SER ASP THR GLY LYS VAL SEQRES 37 X 731 LEU PRO SER ALA PHE VAL GLY THR SER LYS LEU ASP ASP SEQRES 38 X 731 ALA ASN ALA THR ALA THR MET ASP PHE THR ASN TRP ASN SEQRES 39 X 731 GLN THR LEU THR ALA HIS LYS SER TRP PHE MET LEU LYS SEQRES 40 X 731 ASP LYS ILE ALA PHE LEU GLY SER ASN ILE GLN ASN THR SEQRES 41 X 731 SER THR ASP THR ALA ALA THR THR ILE ASP GLN ARG LYS SEQRES 42 X 731 LEU GLU SER SER ASN PRO TYR LYS VAL TYR VAL ASN ASP SEQRES 43 X 731 LYS GLU ALA SER LEU THR GLU GLN GLU LYS ASP TYR PRO SEQRES 44 X 731 GLU THR GLN SER VAL PHE LEU GLU SER SER ASP SER LYS SEQRES 45 X 731 LYS ASN ILE GLY TYR PHE PHE PHE LYS LYS SER SER ILE SEQRES 46 X 731 SER MET SER LYS ALA LEU GLN LYS GLY ALA TRP LYS ASP SEQRES 47 X 731 ILE ASN GLU GLY GLN SER ASP LYS GLU VAL GLU ASN GLU SEQRES 48 X 731 PHE LEU THR ILE SER GLN ALA HIS LYS GLN ASN GLY ASP SEQRES 49 X 731 SER TYR GLY TYR MET LEU ILE PRO ASN VAL ASP ARG ALA SEQRES 50 X 731 THR PHE ASN GLN MET ILE LYS GLU LEU GLU SER SER LEU SEQRES 51 X 731 ILE GLU ASN ASN GLU THR LEU GLN SER VAL TYR ASP ALA SEQRES 52 X 731 LYS GLN GLY VAL TRP GLY ILE VAL LYS TYR ASP ASP SER SEQRES 53 X 731 VAL SER THR ILE SER ASN GLN PHE GLN VAL LEU LYS ARG SEQRES 54 X 731 GLY VAL TYR THR ILE ARG LYS GLU GLY ASP GLU TYR LYS SEQRES 55 X 731 ILE ALA TYR TYR ASN PRO GLU THR GLN GLU SER ALA PRO SEQRES 56 X 731 ASP GLN GLU VAL PHE LYS LYS LEU GLU GLN HIS HIS HIS SEQRES 57 X 731 HIS HIS HIS HET MLA X1892 7 HET MLA X1893 7 HET MLA X1894 7 HET MLA X1895 7 HET MLA X1896 7 HET MLA X1897 7 HETNAM MLA MALONIC ACID HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 2 MLA 6(C3 H4 O4) HELIX 1 1 ASP X 172 ARG X 177 1 6 HELIX 2 2 ARG X 177 ALA X 186 1 10 HELIX 3 3 GLN X 197 SER X 214 1 18 HELIX 4 4 SER X 235 THR X 253 1 19 HELIX 5 5 ASP X 262 VAL X 280 1 19 HELIX 6 6 ASN X 290 ILE X 296 1 7 HELIX 7 7 THR X 298 MET X 309 1 12 HELIX 8 8 SER X 314 VAL X 329 1 16 HELIX 9 9 LEU X 346 ASN X 349 5 4 HELIX 10 10 LEU X 350 LYS X 365 1 16 HELIX 11 11 ASP X 366 GLU X 378 1 13 HELIX 12 12 GLN X 379 LYS X 382 5 4 HELIX 13 13 ALA X 407 THR X 426 1 20 HELIX 14 14 ASP X 433 MET X 435 5 3 HELIX 15 15 GLN X 436 SER X 445 1 10 HELIX 16 16 PHE X 446 PRO X 448 5 3 HELIX 17 17 ARG X 462 ARG X 466 5 5 HELIX 18 18 ARG X 466 GLU X 470 5 5 HELIX 19 19 ALA X 475 MET X 488 1 14 HELIX 20 20 GLY X 491 SER X 507 1 17 HELIX 21 21 ASP X 512 LEU X 517 5 6 HELIX 22 22 THR X 519 ASP X 532 1 14 HELIX 23 23 GLY X 607 VAL X 612 1 6 HELIX 24 24 ASP X 737 LYS X 740 5 4 HELIX 25 25 ALA X 762 ILE X 766 5 5 HELIX 26 26 ASP X 802 LYS X 811 1 10 HELIX 27 27 PRO X 882 PHE X 887 1 6 SHEET 1 XA 3 GLY X 389 PHE X 390 0 SHEET 2 XA 3 TYR X 396 ASP X 398 -1 O ILE X 397 N GLY X 389 SHEET 3 XA 3 VAL X 402 ALA X 403 -1 O VAL X 402 N ASP X 398 SHEET 1 XB 2 LEU X 450 VAL X 451 0 SHEET 2 XB 2 GLU X 454 LEU X 455 -1 O GLU X 454 N VAL X 451 SHEET 1 XC 4 TYR X 543 PHE X 547 0 SHEET 2 XC 4 LYS X 552 TYR X 556 -1 O LYS X 552 N PHE X 547 SHEET 3 XC 4 GLY X 563 SER X 567 -1 O PHE X 564 N MET X 555 SHEET 4 XC 4 MET X 593 TYR X 597 -1 O MET X 593 N SER X 567 SHEET 1 XD 5 THR X 621 GLU X 622 0 SHEET 2 XD 5 ALA X 693 LYS X 700 -1 O ALA X 693 N GLU X 622 SHEET 3 XD 5 VAL X 775 ALA X 785 -1 O LEU X 780 N ARG X 699 SHEET 4 XD 5 ILE X 752 GLY X 761 -1 O SER X 753 N SER X 783 SHEET 5 XD 5 LYS X 723 TYR X 725 -1 O LYS X 723 N MET X 754 SHEET 1 XE 9 VAL X 641 ASP X 647 0 SHEET 2 XE 9 ASN X 650 ASP X 656 -1 O ASN X 650 N LEU X 646 SHEET 3 XE 9 HIS X 667 LEU X 673 -1 O LYS X 668 N MET X 655 SHEET 4 XE 9 ILE X 677 LEU X 680 -1 O ALA X 678 N PHE X 671 SHEET 5 XE 9 TYR X 795 PRO X 799 -1 O TYR X 795 N PHE X 679 SHEET 6 XE 9 ILE X 742 PHE X 746 -1 O GLY X 743 N ILE X 798 SHEET 7 XE 9 VAL X 731 GLU X 734 -1 O VAL X 731 N TYR X 744 SHEET 8 XE 9 LYS X 708 VAL X 711 -1 O LYS X 708 N GLU X 734 SHEET 9 XE 9 LYS X 714 GLU X 715 -1 O LYS X 714 N VAL X 711 SHEET 1 XF 5 LEU X 817 ASN X 821 0 SHEET 2 XF 5 LEU X 824 ASP X 829 -1 O LEU X 824 N ASN X 821 SHEET 3 XF 5 VAL X 834 LYS X 839 -1 O VAL X 834 N ASP X 829 SHEET 4 XF 5 GLY X 857 LYS X 863 -1 O GLY X 857 N LYS X 839 SHEET 5 XF 5 TYR X 868 TYR X 873 -1 O LYS X 869 N ARG X 862 SHEET 1 XG 2 SER X 845 ILE X 847 0 SHEET 2 XG 2 PHE X 851 VAL X 853 -1 O PHE X 851 N ILE X 847 SITE 1 AC1 4 TYR X 408 ARG X 462 SER X 463 ARG X 466 SITE 1 AC2 1 ASP X 366 SITE 1 AC3 1 LYS X 831 SITE 1 AC4 2 GLU X 333 HIS X 334 SITE 1 AC5 1 ASP X 791 SITE 1 AC6 1 ASP X 656 CRYST1 117.722 101.052 85.211 90.00 125.12 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008495 0.000000 0.005974 0.00000 SCALE2 0.000000 0.009896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014347 0.00000 MASTER 453 0 6 27 30 0 6 6 0 0 0 57 END