HEADER MEMBRANE PROTEIN 07-FEB-05 2BJP TITLE THEORETICAL MODEL OF RAGE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC COMPND 3 RECEPTOR; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: RECEPTOR FOR ADVANCED GLYCOSYLATION END PRODUCTS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS IMMUNOGLOBULIN DOMAIN, GLYCOPROTEIN, TRANSMEMBRANE, REPEAT, KEYWDS 2 SIGNAL, ALTERNATIVE SPLICING, POLYMORPHISM, MALLENA, EXPDTA THEORETICAL MODEL AUTHOR A.SAH,S.MAHANTA,M.NEEPER,A.M.SCHMIDT REVDAT 1 08-FEB-05 2BJP 0 JRNL AUTH M.NEEPER,A.M.SCHMIDT,A.SAH,S.MAHANTA JRNL TITL CLONING AND EXPRESSION OF A CELL SURFACE RECEPTOR JRNL TITL 2 FOR ADVANCED GLYCOSYLATION END PRODUCTS OF PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MODELLER GIVES REFINEMENT UPTO A REMARK 3 NINETY-FIVE PERCENTAGE. REMARK 4 REMARK 4 2BJP COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 7-FEB-2005. REMARK 100 THE EBI ID CODE IS EBI-22862. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: MODELLER IS A 3D PREDICTION SOFTWARE WHICH USES SPATIAL REMARK 220 RESTRAINT. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 268 CG - CD - OE1 ANGL. DEV. =-75.4 DEGREES REMARK 500 GLN A 268 CG - CD - NE2 ANGL. DEV. =-24.9 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 35 -91.18 176.03 REMARK 500 VAL A 137 -151.83 111.13 REMARK 500 ALA A 152 -30.68 62.89 REMARK 500 LEU A 164 -116.06 -173.38 REMARK 500 LYS A 169 114.60 145.96 REMARK 500 SER A 207 -170.38 123.65 REMARK 500 GLU A 231 -78.98 72.61 REMARK 500 ALA A 250 121.50 105.12 REMARK 500 LEU A 286 160.38 124.64 REMARK 500 VAL A 302 -102.77 -164.00 REMARK 500 ALA A 396 -147.98 169.41 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PWI RELATED DB: PDB REMARK 900 ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC REMARK 900 RECEPTOR PRECURSOR STRUCTURE DEVELOPED IN SILICO DBREF 2BJP A 1 404 UNP Q15109 RAGE_HUMAN 1 404 SEQRES 1 A 404 MET ALA ALA GLY THR ALA VAL GLY ALA TRP VAL LEU VAL SEQRES 2 A 404 LEU SER LEU TRP GLY ALA VAL VAL GLY ALA GLN ASN ILE SEQRES 3 A 404 THR ALA ARG ILE GLY GLU PRO LEU VAL LEU LYS CYS LYS SEQRES 4 A 404 GLY ALA PRO LYS LYS PRO PRO GLN ARG LEU GLU TRP LYS SEQRES 5 A 404 LEU ASN THR GLY ARG THR GLU ALA TRP LYS VAL LEU SER SEQRES 6 A 404 PRO GLN GLY GLY GLY PRO TRP ASP SER VAL ALA ARG VAL SEQRES 7 A 404 LEU PRO ASN GLY SER LEU PHE LEU PRO ALA VAL GLY ILE SEQRES 8 A 404 GLN ASP GLU GLY ILE PHE ARG CYS GLN ALA MET ASN ARG SEQRES 9 A 404 ASN GLY LYS GLU THR LYS SER ASN TYR ARG VAL ARG VAL SEQRES 10 A 404 TYR GLN ILE PRO GLY LYS PRO GLU ILE VAL ASP SER ALA SEQRES 11 A 404 SER GLU LEU THR ALA GLY VAL PRO ASN LYS VAL GLY THR SEQRES 12 A 404 CYS VAL SER GLU GLY SER TYR PRO ALA GLY THR LEU SER SEQRES 13 A 404 TRP HIS LEU ASP GLY LYS PRO LEU VAL PRO ASN GLU LYS SEQRES 14 A 404 GLY VAL SER VAL LYS GLU GLN THR ARG ARG HIS PRO GLU SEQRES 15 A 404 THR GLY LEU PHE THR LEU GLN SER GLU LEU MET VAL THR SEQRES 16 A 404 PRO ALA ARG GLY GLY ASP PRO ARG PRO THR PHE SER CYS SEQRES 17 A 404 SER PHE SER PRO GLY LEU PRO ARG HIS ARG ALA LEU ARG SEQRES 18 A 404 THR ALA PRO ILE GLN PRO ARG VAL TRP GLU PRO VAL PRO SEQRES 19 A 404 LEU GLU GLU VAL GLN LEU VAL VAL GLU PRO GLU GLY GLY SEQRES 20 A 404 ALA VAL ALA PRO GLY GLY THR VAL THR LEU THR CYS GLU SEQRES 21 A 404 VAL PRO ALA GLN PRO SER PRO GLN ILE HIS TRP MET LYS SEQRES 22 A 404 ASP GLY VAL PRO LEU PRO LEU PRO PRO SER PRO VAL LEU SEQRES 23 A 404 ILE LEU PRO GLU ILE GLY PRO GLN ASP GLN GLY THR TYR SEQRES 24 A 404 SER CYS VAL ALA THR HIS SER SER HIS GLY PRO GLN GLU SEQRES 25 A 404 SER ARG ALA VAL SER ILE SER ILE ILE GLU PRO GLY GLU SEQRES 26 A 404 GLU GLY PRO THR ALA GLY SER VAL GLY GLY SER GLY LEU SEQRES 27 A 404 GLY THR LEU ALA LEU ALA LEU GLY ILE LEU GLY GLY LEU SEQRES 28 A 404 GLY THR ALA ALA LEU LEU ILE GLY VAL ILE LEU TRP GLN SEQRES 29 A 404 ARG ARG GLN ARG ARG GLY GLU GLU ARG LYS ALA PRO GLU SEQRES 30 A 404 ASN GLN GLU GLU GLU GLU GLU ARG ALA GLU LEU ASN GLN SEQRES 31 A 404 SER GLU GLU PRO GLU ALA GLY GLU SER SER THR GLY GLY SEQRES 32 A 404 PRO HELIX 1 1 GLY A 292 GLN A 296 5 5 SHEET 1 AA 3 THR A 187 LEU A 188 0 SHEET 2 AA 3 LEU A 341 GLY A 349 1 N ALA A 342 O THR A 187 SHEET 3 AA 3 GLN A 367 GLU A 371 -1 O GLN A 367 N GLY A 349 SHEET 1 AB 2 GLN A 379 GLU A 380 0 SHEET 2 AB 2 GLU A 383 GLU A 384 -1 O GLU A 383 N GLU A 380 SSBOND 1 CYS A 38 CYS A 144 CISPEP 1 LEU A 214 PRO A 215 0 -0.62 CISPEP 2 LEU A 240 VAL A 241 0 1.47 CISPEP 3 VAL A 241 VAL A 242 0 1.68 CISPEP 4 GLU A 243 PRO A 244 0 -0.74 CISPEP 5 GLN A 268 ILE A 269 0 4.17 CISPEP 6 GLU A 322 PRO A 323 0 -2.76 CISPEP 7 GLU A 371 GLU A 372 0 -0.29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 71 0 0 1 5 0 0 6 0 0 0 32 END