HEADER DNA BINDING PROTEIN 06-SEP-05 2AY0 TITLE STRUCTURE OF THE LYS9MET MUTANT OF THE E. COLI PROLINE UTILIZATION A TITLE 2 (PUTA) DNA-BINDING DOMAIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PUTA PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: RESIDUES 1-52; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PUTA, POAA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS PUTA, RIBBON-HELIX-HELIX, DNA-BINDING DOMAIN, PROLINE CATABOLISM, KEYWDS 2 PROLINE UTILIZATION A, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.D.LARSON,J.P.SCHUERMANN,Y.ZHOU,J.L.JENKINS,D.F.BECKER,J.J.TANNER REVDAT 6 20-OCT-21 2AY0 1 REMARK SEQADV REVDAT 5 13-JUL-11 2AY0 1 VERSN REVDAT 4 24-FEB-09 2AY0 1 VERSN REVDAT 3 15-FEB-07 2AY0 1 JRNL REVDAT 2 05-DEC-06 2AY0 1 JRNL REVDAT 1 15-AUG-06 2AY0 0 JRNL AUTH J.D.LARSON,J.L.JENKINS,J.P.SCHUERMANN,Y.ZHOU,D.F.BECKER, JRNL AUTH 2 J.J.TANNER JRNL TITL CRYSTAL STRUCTURES OF THE DNA-BINDING DOMAIN OF ESCHERICHIA JRNL TITL 2 COLI PROLINE UTILIZATION A FLAVOPROTEIN AND ANALYSIS OF THE JRNL TITL 3 ROLE OF LYS9 IN DNA RECOGNITION. JRNL REF PROTEIN SCI. V. 15 2630 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 17001030 JRNL DOI 10.1110/PS.062425706 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1632 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.155 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2102 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1997 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2842 ; 1.139 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4596 ; 0.774 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 255 ; 4.667 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;32.346 ;22.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;15.652 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.232 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2253 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 425 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 477 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1913 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1016 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1276 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 58 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.253 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1414 ; 0.732 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 536 ; 0.137 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2104 ; 1.007 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 877 ; 1.637 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 738 ; 2.473 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3130 42.7380 10.8140 REMARK 3 T TENSOR REMARK 3 T11: -0.0218 T22: -0.1271 REMARK 3 T33: -0.1213 T12: 0.0860 REMARK 3 T13: -0.0081 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 4.2033 L22: 4.7459 REMARK 3 L33: 10.6318 L12: -1.5858 REMARK 3 L13: 3.4670 L23: -2.3981 REMARK 3 S TENSOR REMARK 3 S11: 0.2110 S12: -0.0152 S13: -0.1848 REMARK 3 S21: -0.2905 S22: -0.1569 S23: -0.0056 REMARK 3 S31: 0.4869 S32: 0.2704 S33: -0.0541 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4660 39.8940 20.0350 REMARK 3 T TENSOR REMARK 3 T11: -0.1894 T22: -0.0783 REMARK 3 T33: -0.1399 T12: 0.0813 REMARK 3 T13: -0.0350 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 3.2266 L22: 8.3023 REMARK 3 L33: 10.4517 L12: -0.0055 REMARK 3 L13: 0.3153 L23: -5.6434 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: 0.0755 S13: 0.1329 REMARK 3 S21: -0.3419 S22: -0.1229 S23: 0.2529 REMARK 3 S31: -0.1346 S32: -0.0792 S33: 0.0552 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 45 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3880 27.2480 19.5060 REMARK 3 T TENSOR REMARK 3 T11: -0.1414 T22: -0.0346 REMARK 3 T33: -0.1549 T12: 0.1121 REMARK 3 T13: 0.0344 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 4.0697 L22: 8.4073 REMARK 3 L33: 6.4585 L12: -0.2911 REMARK 3 L13: -0.0579 L23: 2.0508 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.1763 S13: -0.1729 REMARK 3 S21: -0.1328 S22: -0.0365 S23: -0.0977 REMARK 3 S31: 0.2191 S32: 0.3264 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 47 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2180 21.2010 14.1920 REMARK 3 T TENSOR REMARK 3 T11: -0.0313 T22: -0.0635 REMARK 3 T33: -0.1241 T12: 0.0788 REMARK 3 T13: -0.0046 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 6.7255 L22: 7.0391 REMARK 3 L33: 4.9950 L12: -1.0593 REMARK 3 L13: -2.0368 L23: 2.5503 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: 0.2613 S13: 0.0415 REMARK 3 S21: -0.0258 S22: -0.1426 S23: 0.2568 REMARK 3 S31: 0.0541 S32: -0.2278 S33: 0.1761 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 45 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8260 7.7580 14.9610 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: -0.0596 REMARK 3 T33: -0.1082 T12: 0.0640 REMARK 3 T13: 0.0178 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 3.8279 L22: 4.5871 REMARK 3 L33: 5.4508 L12: -2.0700 REMARK 3 L13: -0.3556 L23: 1.9827 REMARK 3 S TENSOR REMARK 3 S11: -0.1668 S12: -0.3015 S13: -0.0500 REMARK 3 S21: 0.4077 S22: 0.0289 S23: 0.1608 REMARK 3 S31: 0.3796 S32: 0.0608 S33: 0.1380 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 3 F 45 REMARK 3 ORIGIN FOR THE GROUP (A): 38.9270 10.6790 11.7200 REMARK 3 T TENSOR REMARK 3 T11: 0.0030 T22: -0.1420 REMARK 3 T33: -0.1298 T12: 0.0790 REMARK 3 T13: -0.0165 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 7.2346 L22: 3.2109 REMARK 3 L33: 5.1189 L12: 0.2830 REMARK 3 L13: 1.1067 L23: 0.2305 REMARK 3 S TENSOR REMARK 3 S11: -0.1948 S12: -0.2980 S13: 0.3784 REMARK 3 S21: 0.1298 S22: 0.0096 S23: -0.0195 REMARK 3 S31: -0.2250 S32: 0.1103 S33: 0.1852 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987121, 0.979553, 0.979144 REMARK 200 MONOCHROMATOR : ALS BEAMLINE 4.2.2 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.2LDZ REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26606 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.470 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.06, RESOLVE 2.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7-3.0 M NACL, 5 MM DITHIOTHREITOL, REMARK 280 PH 3.0-5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.74700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.03500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.74700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLE IS A DIMER. THERE ARE 3 BIOLOGICAL REMARK 300 DIMERS IN THE ASYMMETRIC UNIT: A/B, C/D AND E/F. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 71 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 THR A 49 REMARK 465 LEU A 50 REMARK 465 PRO A 51 REMARK 465 GLU A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 HIS A 55 REMARK 465 HIS A 56 REMARK 465 HIS A 57 REMARK 465 HIS A 58 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLU B 45 REMARK 465 ASN B 46 REMARK 465 SER B 47 REMARK 465 ASP B 48 REMARK 465 THR B 49 REMARK 465 LEU B 50 REMARK 465 PRO B 51 REMARK 465 GLU B 52 REMARK 465 HIS B 53 REMARK 465 HIS B 54 REMARK 465 HIS B 55 REMARK 465 HIS B 56 REMARK 465 HIS B 57 REMARK 465 HIS B 58 REMARK 465 MET C 1 REMARK 465 ASN C 46 REMARK 465 SER C 47 REMARK 465 ASP C 48 REMARK 465 THR C 49 REMARK 465 LEU C 50 REMARK 465 PRO C 51 REMARK 465 GLU C 52 REMARK 465 HIS C 53 REMARK 465 HIS C 54 REMARK 465 HIS C 55 REMARK 465 HIS C 56 REMARK 465 HIS C 57 REMARK 465 HIS C 58 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 ASP D 48 REMARK 465 THR D 49 REMARK 465 LEU D 50 REMARK 465 PRO D 51 REMARK 465 GLU D 52 REMARK 465 HIS D 53 REMARK 465 HIS D 54 REMARK 465 HIS D 55 REMARK 465 HIS D 56 REMARK 465 HIS D 57 REMARK 465 HIS D 58 REMARK 465 MET E 1 REMARK 465 ASN E 46 REMARK 465 SER E 47 REMARK 465 ASP E 48 REMARK 465 THR E 49 REMARK 465 LEU E 50 REMARK 465 PRO E 51 REMARK 465 GLU E 52 REMARK 465 HIS E 53 REMARK 465 HIS E 54 REMARK 465 HIS E 55 REMARK 465 HIS E 56 REMARK 465 HIS E 57 REMARK 465 HIS E 58 REMARK 465 MET F 1 REMARK 465 GLY F 2 REMARK 465 ASN F 46 REMARK 465 SER F 47 REMARK 465 ASP F 48 REMARK 465 THR F 49 REMARK 465 LEU F 50 REMARK 465 PRO F 51 REMARK 465 GLU F 52 REMARK 465 HIS F 53 REMARK 465 HIS F 54 REMARK 465 HIS F 55 REMARK 465 HIS F 56 REMARK 465 HIS F 57 REMARK 465 HIS F 58 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 GLN A 43 CD OE1 NE2 REMARK 470 LYS B 19 NZ REMARK 470 ARG B 24 CZ NH1 NH2 REMARK 470 GLN B 43 OE1 NE2 REMARK 470 ARG C 24 CD NE CZ NH1 NH2 REMARK 470 GLU C 45 CG CD OE1 OE2 REMARK 470 LYS D 19 CD CE NZ REMARK 470 ARG D 24 CD NE CZ NH1 NH2 REMARK 470 LYS E 19 CD CE NZ REMARK 470 ARG E 24 NE CZ NH1 NH2 REMARK 470 LYS F 19 NZ REMARK 470 GLN F 43 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 32 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 44 75.48 -67.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 59 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 59 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 59 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 59 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL F 59 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 59 DBREF 2AY0 A 1 52 UNP P09546 PUTA_ECOLI 1 52 DBREF 2AY0 B 1 52 UNP P09546 PUTA_ECOLI 1 52 DBREF 2AY0 C 1 52 UNP P09546 PUTA_ECOLI 1 52 DBREF 2AY0 D 1 52 UNP P09546 PUTA_ECOLI 1 52 DBREF 2AY0 E 1 52 UNP P09546 PUTA_ECOLI 1 52 DBREF 2AY0 F 1 52 UNP P09546 PUTA_ECOLI 1 52 SEQADV 2AY0 MET A 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS A 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS A 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS A 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS A 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS A 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS A 58 UNP P09546 EXPRESSION TAG SEQADV 2AY0 MET B 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS B 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS B 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS B 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS B 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS B 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS B 58 UNP P09546 EXPRESSION TAG SEQADV 2AY0 MET C 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS C 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS C 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS C 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS C 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS C 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS C 58 UNP P09546 EXPRESSION TAG SEQADV 2AY0 MET D 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS D 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS D 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS D 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS D 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS D 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS D 58 UNP P09546 EXPRESSION TAG SEQADV 2AY0 MET E 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS E 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS E 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS E 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS E 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS E 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS E 58 UNP P09546 EXPRESSION TAG SEQADV 2AY0 MET F 9 UNP P09546 LYS 9 ENGINEERED MUTATION SEQADV 2AY0 HIS F 53 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS F 54 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS F 55 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS F 56 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS F 57 UNP P09546 EXPRESSION TAG SEQADV 2AY0 HIS F 58 UNP P09546 EXPRESSION TAG SEQRES 1 A 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 A 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 A 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 A 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 A 58 HIS HIS HIS HIS HIS HIS SEQRES 1 B 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 B 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 B 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 B 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 B 58 HIS HIS HIS HIS HIS HIS SEQRES 1 C 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 C 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 C 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 C 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 C 58 HIS HIS HIS HIS HIS HIS SEQRES 1 D 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 D 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 D 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 D 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 D 58 HIS HIS HIS HIS HIS HIS SEQRES 1 E 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 E 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 E 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 E 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 E 58 HIS HIS HIS HIS HIS HIS SEQRES 1 F 58 MET GLY THR THR THR MET GLY VAL MET LEU ASP ASP ALA SEQRES 2 F 58 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 F 58 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 F 58 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 F 58 HIS HIS HIS HIS HIS HIS HET CL A 59 1 HET CL B 59 1 HET CL C 59 1 HET CL D 59 1 HET CL E 59 1 HET CL F 59 1 HETNAM CL CHLORIDE ION FORMUL 7 CL 6(CL 1-) FORMUL 13 HOH *67(H2 O) HELIX 1 1 ASP A 11 ILE A 25 1 15 HELIX 2 2 THR A 28 LEU A 44 1 17 HELIX 3 3 ASP B 11 ARG B 24 1 14 HELIX 4 4 THR B 28 LEU B 44 1 17 HELIX 5 5 ASP C 11 ASP C 26 1 16 HELIX 6 6 THR C 28 GLU C 45 1 18 HELIX 7 7 ASP D 12 ILE D 25 1 14 HELIX 8 8 THR D 28 SER D 47 1 20 HELIX 9 9 ASP E 11 ILE E 25 1 15 HELIX 10 10 THR E 28 GLU E 45 1 18 HELIX 11 11 ASP F 12 ILE F 25 1 14 HELIX 12 12 THR F 28 GLU F 45 1 18 SHEET 1 A 2 THR A 4 LEU A 10 0 SHEET 2 A 2 THR B 4 LEU B 10 -1 O LEU B 10 N THR A 4 SHEET 1 B 2 THR C 3 LEU C 10 0 SHEET 2 B 2 THR D 4 ASP D 11 -1 O LEU D 10 N THR C 4 SHEET 1 C 2 THR E 3 LEU E 10 0 SHEET 2 C 2 THR F 4 ASP F 11 -1 O LEU F 10 N THR E 4 SITE 1 AC1 3 ARG D 27 TRP D 31 MET F 9 SITE 1 AC2 5 VAL A 8 MET A 9 LYS B 34 ARG C 27 SITE 2 AC2 5 TRP C 31 SITE 1 AC3 4 ARG A 27 TRP A 31 MET E 9 LYS F 34 SITE 1 AC4 4 MET C 9 HOH C 65 ARG E 27 TRP E 31 SITE 1 AC5 3 MET B 9 ARG F 27 TRP F 31 SITE 1 AC6 5 ARG B 27 TRP B 31 LYS C 34 HOH C 68 SITE 2 AC6 5 MET D 9 CRYST1 72.070 91.494 69.606 90.00 119.21 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013875 0.000000 0.007758 0.00000 SCALE2 0.000000 0.010930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016460 0.00000 MASTER 557 0 6 12 6 0 8 6 0 0 0 30 END