HEADER TRANSCRIPTION/RNA 26-AUG-05 2ATW TITLE STRUCTURE OF A MYCOBACTERIUM TUBERCULOSIS NUSA-RNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL RNA (5'- AGAACUCAAUAG -3'); COMPND 3 CHAIN: B, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TRANSCRIPTION ELONGATION PROTEIN NUSA; COMPND 7 CHAIN: A, C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: RNA OLIGONUCLEOTIDE SYNTHESIS; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 6 ORGANISM_TAXID: 1773; SOURCE 7 GENE: NUSA; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PROTEIN-RNA COMPLEX, TRANSCRIPTION/RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.BEUTH,S.PENNELL,K.B.ARNVIG,S.R.MARTIN,I.A.TAYLOR REVDAT 3 24-FEB-09 2ATW 1 VERSN REVDAT 2 15-NOV-05 2ATW 1 JRNL REVDAT 1 11-OCT-05 2ATW 0 JRNL AUTH B.BEUTH,S.PENNELL,K.B.ARNVIG,S.R.MARTIN,I.A.TAYLOR JRNL TITL STRUCTURE OF A MYCOBACTERIUM TUBERCULOSIS NUSA-RNA JRNL TITL 2 COMPLEX. JRNL REF EMBO J. V. 24 3576 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16193062 JRNL DOI 10.1038/SJ.EMBOJ.7600829 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 26701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1425 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1878 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3365 REMARK 3 NUCLEIC ACID ATOMS : 510 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.297 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.301 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3981 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5505 ; 1.734 ; 2.127 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 4.277 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 620 ;18.571 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 633 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2838 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1679 ; 0.249 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 401 ; 0.188 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.239 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.253 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2219 ; 0.895 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3569 ; 1.704 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1762 ; 2.540 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1936 ; 3.950 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ATW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-05. REMARK 100 THE RCSB ID CODE IS RCSB034305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28167 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : 0.46000 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2ASB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, POTASSIUM REMARK 280 DIHYDROGENPHOSPHATE, PH 7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.28200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.44650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.77150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.44650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.28200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.77150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ONE MOLECULE NUSA IS IN COMPLEX WITH ONE MOLECULE RNA REMARK 300 OLIGONUCLEOTIDE. THE BIOLOGICAL ASSEMBLY IS A MONOMERIC 1:1 REMARK 300 COMPLEX. THERE ARE 2 BIOLOGICAL ASSEMBLIES IN THE ASYMMETRIC REMARK 300 UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 105 REMARK 465 GLU A 106 REMARK 465 PRO A 330 REMARK 465 PRO A 331 REMARK 465 PRO A 332 REMARK 465 GLY A 333 REMARK 465 GLN A 334 REMARK 465 PRO A 335 REMARK 465 GLU A 336 REMARK 465 PRO A 337 REMARK 465 GLY A 338 REMARK 465 VAL A 339 REMARK 465 SER A 340 REMARK 465 ARG A 341 REMARK 465 GLY A 342 REMARK 465 MET A 343 REMARK 465 ALA A 344 REMARK 465 HIS A 345 REMARK 465 ASP A 346 REMARK 465 ARG A 347 REMARK 465 LEU A 348 REMARK 465 GLU A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 HIS A 352 REMARK 465 HIS A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 PRO C 330 REMARK 465 PRO C 331 REMARK 465 PRO C 332 REMARK 465 GLY C 333 REMARK 465 GLN C 334 REMARK 465 PRO C 335 REMARK 465 GLU C 336 REMARK 465 PRO C 337 REMARK 465 GLY C 338 REMARK 465 VAL C 339 REMARK 465 SER C 340 REMARK 465 ARG C 341 REMARK 465 GLY C 342 REMARK 465 MET C 343 REMARK 465 ALA C 344 REMARK 465 HIS C 345 REMARK 465 ASP C 346 REMARK 465 ARG C 347 REMARK 465 LEU C 348 REMARK 465 GLU C 349 REMARK 465 HIS C 350 REMARK 465 HIS C 351 REMARK 465 HIS C 352 REMARK 465 HIS C 353 REMARK 465 HIS C 354 REMARK 465 HIS C 355 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 134 O HOH C 1109 2.04 REMARK 500 OP1 U B 9 O3' G B 11 2.12 REMARK 500 OE2 GLU C 106 NH1 ARG C 172 2.15 REMARK 500 CG ASP A 284 O HOH A 1081 2.16 REMARK 500 O HOH A 1060 O HOH A 1197 2.18 REMARK 500 OP1 U D 9 O3' G D 11 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 140 O HOH C 1128 1554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B 3 C5 A B 3 N7 -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 1 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 G B 1 C6 - N1 - C2 ANGL. DEV. = -3.8 DEGREES REMARK 500 A B 2 O4' - C1' - N9 ANGL. DEV. = 7.7 DEGREES REMARK 500 A B 3 O4' - C1' - N9 ANGL. DEV. = -5.9 DEGREES REMARK 500 A B 7 C4' - C3' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 A B 8 O5' - C5' - C4' ANGL. DEV. = -5.5 DEGREES REMARK 500 A D 2 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 U D 9 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 A D 10 O4' - C1' - N9 ANGL. DEV. = -8.5 DEGREES REMARK 500 A D 10 C4 - C5 - N7 ANGL. DEV. = 3.5 DEGREES REMARK 500 A D 10 N1 - C6 - N6 ANGL. DEV. = 3.9 DEGREES REMARK 500 U D 9 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP A 284 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 259 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 263 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 139 -100.31 -135.17 REMARK 500 ALA A 174 -93.98 -50.91 REMARK 500 ARG A 175 -77.49 -77.86 REMARK 500 HIS A 216 -63.74 -124.07 REMARK 500 MET A 239 16.30 56.68 REMARK 500 SER A 251 49.79 39.28 REMARK 500 ASP A 284 108.36 -167.44 REMARK 500 GLU A 306 17.56 55.03 REMARK 500 GLU C 106 -55.95 80.53 REMARK 500 THR C 139 -103.41 -127.30 REMARK 500 GLU C 176 133.29 170.16 REMARK 500 HIS C 216 -63.89 -121.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH 12MER RNA. DBREF 2ATW A 105 347 UNP P0A5M2 NUSA_MYCTU 105 347 DBREF 2ATW C 105 347 UNP P0A5M2 NUSA_MYCTU 105 347 DBREF 2ATW B 0 11 PDB 2ATW 2ATW 0 11 DBREF 2ATW D 0 11 PDB 2ATW 2ATW 0 11 SEQADV 2ATW LEU A 348 UNP P0A5M2 CLONING ARTIFACT SEQADV 2ATW GLU A 349 UNP P0A5M2 CLONING ARTIFACT SEQADV 2ATW HIS A 350 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS A 351 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS A 352 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS A 353 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS A 354 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS A 355 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW LEU C 348 UNP P0A5M2 CLONING ARTIFACT SEQADV 2ATW GLU C 349 UNP P0A5M2 CLONING ARTIFACT SEQADV 2ATW HIS C 350 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS C 351 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS C 352 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS C 353 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS C 354 UNP P0A5M2 EXPRESSION TAG SEQADV 2ATW HIS C 355 UNP P0A5M2 EXPRESSION TAG SEQRES 1 B 12 A G A A C U C A A U A G SEQRES 1 D 12 A G A A C U C A A U A G SEQRES 1 A 251 GLY GLU PHE SER THR ARG GLU GLY GLU ILE VAL ALA GLY SEQRES 2 A 251 VAL ILE GLN ARG ASP SER ARG ALA ASN ALA ARG GLY LEU SEQRES 3 A 251 VAL VAL VAL ARG ILE GLY THR GLU THR LYS ALA SER GLU SEQRES 4 A 251 GLY VAL ILE PRO ALA ALA GLU GLN VAL PRO GLY GLU SER SEQRES 5 A 251 TYR GLU HIS GLY ASN ARG LEU ARG CYS TYR VAL VAL GLY SEQRES 6 A 251 VAL THR ARG GLY ALA ARG GLU PRO LEU ILE THR LEU SER SEQRES 7 A 251 ARG THR HIS PRO ASN LEU VAL ARG LYS LEU PHE SER LEU SEQRES 8 A 251 GLU VAL PRO GLU ILE ALA ASP GLY SER VAL GLU ILE VAL SEQRES 9 A 251 ALA VAL ALA ARG GLU ALA GLY HIS ARG SER LYS ILE ALA SEQRES 10 A 251 VAL ARG SER ASN VAL ALA GLY LEU ASN ALA LYS GLY ALA SEQRES 11 A 251 CYS ILE GLY PRO MET GLY GLN ARG VAL ARG ASN VAL MET SEQRES 12 A 251 SER GLU LEU SER GLY GLU LYS ILE ASP ILE ILE ASP TYR SEQRES 13 A 251 ASP ASP ASP PRO ALA ARG PHE VAL ALA ASN ALA LEU SER SEQRES 14 A 251 PRO ALA LYS VAL VAL SER VAL SER VAL ILE ASP GLN THR SEQRES 15 A 251 ALA ARG ALA ALA ARG VAL VAL VAL PRO ASP PHE GLN LEU SEQRES 16 A 251 SER LEU ALA ILE GLY LYS GLU GLY GLN ASN ALA ARG LEU SEQRES 17 A 251 ALA ALA ARG LEU THR GLY TRP ARG ILE ASP ILE ARG GLY SEQRES 18 A 251 ASP ALA PRO PRO PRO PRO PRO GLY GLN PRO GLU PRO GLY SEQRES 19 A 251 VAL SER ARG GLY MET ALA HIS ASP ARG LEU GLU HIS HIS SEQRES 20 A 251 HIS HIS HIS HIS SEQRES 1 C 251 GLY GLU PHE SER THR ARG GLU GLY GLU ILE VAL ALA GLY SEQRES 2 C 251 VAL ILE GLN ARG ASP SER ARG ALA ASN ALA ARG GLY LEU SEQRES 3 C 251 VAL VAL VAL ARG ILE GLY THR GLU THR LYS ALA SER GLU SEQRES 4 C 251 GLY VAL ILE PRO ALA ALA GLU GLN VAL PRO GLY GLU SER SEQRES 5 C 251 TYR GLU HIS GLY ASN ARG LEU ARG CYS TYR VAL VAL GLY SEQRES 6 C 251 VAL THR ARG GLY ALA ARG GLU PRO LEU ILE THR LEU SER SEQRES 7 C 251 ARG THR HIS PRO ASN LEU VAL ARG LYS LEU PHE SER LEU SEQRES 8 C 251 GLU VAL PRO GLU ILE ALA ASP GLY SER VAL GLU ILE VAL SEQRES 9 C 251 ALA VAL ALA ARG GLU ALA GLY HIS ARG SER LYS ILE ALA SEQRES 10 C 251 VAL ARG SER ASN VAL ALA GLY LEU ASN ALA LYS GLY ALA SEQRES 11 C 251 CYS ILE GLY PRO MET GLY GLN ARG VAL ARG ASN VAL MET SEQRES 12 C 251 SER GLU LEU SER GLY GLU LYS ILE ASP ILE ILE ASP TYR SEQRES 13 C 251 ASP ASP ASP PRO ALA ARG PHE VAL ALA ASN ALA LEU SER SEQRES 14 C 251 PRO ALA LYS VAL VAL SER VAL SER VAL ILE ASP GLN THR SEQRES 15 C 251 ALA ARG ALA ALA ARG VAL VAL VAL PRO ASP PHE GLN LEU SEQRES 16 C 251 SER LEU ALA ILE GLY LYS GLU GLY GLN ASN ALA ARG LEU SEQRES 17 C 251 ALA ALA ARG LEU THR GLY TRP ARG ILE ASP ILE ARG GLY SEQRES 18 C 251 ASP ALA PRO PRO PRO PRO PRO GLY GLN PRO GLU PRO GLY SEQRES 19 C 251 VAL SER ARG GLY MET ALA HIS ASP ARG LEU GLU HIS HIS SEQRES 20 C 251 HIS HIS HIS HIS FORMUL 5 HOH *208(H2 O) HELIX 1 1 ASP A 122 ARG A 128 1 7 HELIX 2 2 PRO A 147 GLN A 151 5 5 HELIX 3 3 HIS A 185 VAL A 197 1 13 HELIX 4 4 VAL A 197 ASP A 202 1 6 HELIX 5 5 ASN A 230 GLY A 237 1 8 HELIX 6 6 GLY A 240 LEU A 250 1 11 HELIX 7 7 ASP A 263 LEU A 272 1 10 HELIX 8 8 PRO A 295 PHE A 297 5 3 HELIX 9 9 GLN A 298 GLY A 304 1 7 HELIX 10 10 GLY A 307 GLY A 318 1 12 HELIX 11 11 ASP C 122 ARG C 128 1 7 HELIX 12 12 PRO C 147 GLN C 151 5 5 HELIX 13 13 PRO C 186 VAL C 197 1 12 HELIX 14 14 VAL C 197 ASP C 202 1 6 HELIX 15 15 ASN C 230 GLY C 237 1 8 HELIX 16 16 GLY C 240 LEU C 250 1 11 HELIX 17 17 ASP C 263 LEU C 272 1 10 HELIX 18 18 PRO C 295 PHE C 297 5 3 HELIX 19 19 GLN C 298 GLY C 304 1 7 HELIX 20 20 GLY C 307 GLY C 318 1 12 SHEET 1 A 6 ILE A 114 GLN A 120 0 SHEET 2 A 6 VAL A 131 ILE A 135 -1 O ARG A 134 N VAL A 118 SHEET 3 A 6 SER A 142 ILE A 146 -1 O ILE A 146 N VAL A 131 SHEET 4 A 6 LEU A 178 SER A 182 1 O LEU A 181 N VAL A 145 SHEET 5 A 6 ARG A 162 THR A 171 -1 N THR A 171 O LEU A 178 SHEET 6 A 6 ILE A 114 GLN A 120 -1 N VAL A 115 O CYS A 165 SHEET 1 B 3 VAL A 205 GLU A 213 0 SHEET 2 B 3 ARG A 217 SER A 224 -1 O ALA A 221 N ALA A 209 SHEET 3 B 3 LYS A 254 ASP A 259 1 O ILE A 258 N ILE A 220 SHEET 1 C 3 SER A 279 ASP A 284 0 SHEET 2 C 3 ALA A 289 VAL A 294 -1 O ARG A 291 N SER A 281 SHEET 3 C 3 ARG A 320 GLY A 325 1 O ARG A 320 N ALA A 290 SHEET 1 D 6 ILE C 114 GLN C 120 0 SHEET 2 D 6 VAL C 131 ILE C 135 -1 O ARG C 134 N VAL C 118 SHEET 3 D 6 SER C 142 ILE C 146 -1 O GLY C 144 N VAL C 133 SHEET 4 D 6 LEU C 178 SER C 182 1 O LEU C 181 N VAL C 145 SHEET 5 D 6 ARG C 162 THR C 171 -1 N GLY C 169 O THR C 180 SHEET 6 D 6 ILE C 114 GLN C 120 -1 N VAL C 115 O CYS C 165 SHEET 1 E 3 VAL C 205 GLU C 213 0 SHEET 2 E 3 ARG C 217 SER C 224 -1 O ARG C 223 N GLU C 206 SHEET 3 E 3 LYS C 254 ASP C 259 1 O ILE C 258 N ILE C 220 SHEET 1 F 3 SER C 279 ASP C 284 0 SHEET 2 F 3 ALA C 289 VAL C 294 -1 O VAL C 293 N SER C 279 SHEET 3 F 3 ARG C 320 GLY C 325 1 O ASP C 322 N VAL C 292 CISPEP 1 SER A 273 PRO A 274 0 6.58 CISPEP 2 SER C 273 PRO C 274 0 6.96 CRYST1 64.564 89.543 100.893 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015489 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009911 0.00000 MASTER 420 0 0 20 24 0 0 6 0 0 0 42 END