HEADER HYDROLASE 19-AUG-05 2AR9 TITLE CRYSTAL STRUCTURE OF A DIMERIC CASPASE-9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-9; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 140-416; COMPND 5 EC: 3.4.22.-; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS CASPASE, CASPASE ACTIVATION, INITIATOR CASPASE, CYSTEINE PROTEASE, KEYWDS 2 ENGINEERED CASPASE-9, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHAO,E.N.SHIOZAKI,S.M.SRINIVASSULA,D.J.RIGOTTI,R.FAIRMAN,Y.SHI REVDAT 5 20-OCT-21 2AR9 1 REMARK SEQADV REVDAT 4 15-FEB-12 2AR9 1 HET REVDAT 3 16-NOV-11 2AR9 1 VERSN HETATM REVDAT 2 24-FEB-09 2AR9 1 VERSN REVDAT 1 11-OCT-05 2AR9 0 JRNL AUTH Y.CHAO,E.N.SHIOZAKI,S.M.SRINIVASSULA,D.J.RIGOTTI,R.FAIRMAN, JRNL AUTH 2 Y.SHI JRNL TITL ENGINEERING A DIMERIC CASPASE-9: A RE-EVALUATION OF THE JRNL TITL 2 INDUCED PROXIMITY MODEL FOR CASPASE ACTIVATION JRNL REF PLOS BIOL. V. 3 1079 2005 JRNL REFN ISSN 1544-9173 JRNL PMID 15941357 JRNL DOI 10.1371/JOURNAL.PBIO.0030183 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 31405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3141 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.405 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : MAL.PAR REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AR9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31920 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG5000 MONOMETHYLETHER, MES, REMARK 280 TACSIMATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.34900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.02750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.34900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.02750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 674 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 139 REMARK 465 GLY A 288 REMARK 465 GLY A 289 REMARK 465 GLU A 290 REMARK 465 GLN A 291 REMARK 465 LYS A 292 REMARK 465 ASP A 293 REMARK 465 HIS A 294 REMARK 465 GLY A 295 REMARK 465 PHE A 296 REMARK 465 GLU A 297 REMARK 465 VAL A 298 REMARK 465 ALA A 299 REMARK 465 SER A 300 REMARK 465 THR A 301 REMARK 465 SER A 302 REMARK 465 PRO A 303 REMARK 465 GLU A 304 REMARK 465 ASP A 305 REMARK 465 GLU A 306 REMARK 465 SER A 307 REMARK 465 PRO A 308 REMARK 465 GLY A 309 REMARK 465 SER A 310 REMARK 465 ASN A 311 REMARK 465 PRO A 312 REMARK 465 GLU A 313 REMARK 465 PRO A 314 REMARK 465 ASP A 315 REMARK 465 ALA A 316 REMARK 465 THR A 317 REMARK 465 PRO A 318 REMARK 465 PHE A 319 REMARK 465 GLN A 320 REMARK 465 GLU A 321 REMARK 465 GLY A 322 REMARK 465 LEU A 323 REMARK 465 ARG A 324 REMARK 465 THR A 325 REMARK 465 PHE A 326 REMARK 465 ASP A 327 REMARK 465 GLN A 328 REMARK 465 LEU A 329 REMARK 465 ASP A 330 REMARK 465 ALA A 331 REMARK 465 ILE A 332 REMARK 465 SER A 333 REMARK 465 SER A 334 REMARK 465 MET B 139 REMARK 465 GLU B 290 REMARK 465 GLN B 291 REMARK 465 LYS B 292 REMARK 465 ASP B 293 REMARK 465 HIS B 294 REMARK 465 GLY B 295 REMARK 465 PHE B 296 REMARK 465 GLU B 297 REMARK 465 VAL B 298 REMARK 465 ALA B 299 REMARK 465 SER B 300 REMARK 465 THR B 301 REMARK 465 SER B 302 REMARK 465 PRO B 303 REMARK 465 GLU B 304 REMARK 465 ASP B 305 REMARK 465 GLU B 306 REMARK 465 SER B 307 REMARK 465 PRO B 308 REMARK 465 GLY B 309 REMARK 465 SER B 310 REMARK 465 ASN B 311 REMARK 465 PRO B 312 REMARK 465 GLU B 313 REMARK 465 PRO B 314 REMARK 465 ASP B 315 REMARK 465 ALA B 316 REMARK 465 THR B 317 REMARK 465 PRO B 318 REMARK 465 PHE B 319 REMARK 465 GLN B 320 REMARK 465 GLU B 321 REMARK 465 GLY B 322 REMARK 465 LEU B 323 REMARK 465 ARG B 324 REMARK 465 THR B 325 REMARK 465 PHE B 326 REMARK 465 ASP B 327 REMARK 465 GLN B 328 REMARK 465 LEU B 329 REMARK 465 ASP B 330 REMARK 465 ALA B 331 REMARK 465 ILE B 332 REMARK 465 SER B 333 REMARK 465 SER B 334 REMARK 465 MET C 139 REMARK 465 GLY C 288 REMARK 465 GLY C 289 REMARK 465 GLU C 290 REMARK 465 GLN C 291 REMARK 465 LYS C 292 REMARK 465 ASP C 293 REMARK 465 HIS C 294 REMARK 465 GLY C 295 REMARK 465 PHE C 296 REMARK 465 GLU C 297 REMARK 465 VAL C 298 REMARK 465 ALA C 299 REMARK 465 SER C 300 REMARK 465 THR C 301 REMARK 465 SER C 302 REMARK 465 PRO C 303 REMARK 465 GLU C 304 REMARK 465 ASP C 305 REMARK 465 GLU C 306 REMARK 465 SER C 307 REMARK 465 PRO C 308 REMARK 465 GLY C 309 REMARK 465 SER C 310 REMARK 465 ASN C 311 REMARK 465 PRO C 312 REMARK 465 GLU C 313 REMARK 465 PRO C 314 REMARK 465 ASP C 315 REMARK 465 ALA C 316 REMARK 465 THR C 317 REMARK 465 PRO C 318 REMARK 465 PHE C 319 REMARK 465 GLN C 320 REMARK 465 GLU C 321 REMARK 465 GLY C 322 REMARK 465 LEU C 323 REMARK 465 ARG C 324 REMARK 465 THR C 325 REMARK 465 PHE C 326 REMARK 465 ASP C 327 REMARK 465 GLN C 328 REMARK 465 LEU C 329 REMARK 465 ASP C 330 REMARK 465 ALA C 331 REMARK 465 ILE C 332 REMARK 465 SER C 333 REMARK 465 SER C 334 REMARK 465 MET D 139 REMARK 465 GLY D 289 REMARK 465 GLU D 290 REMARK 465 GLN D 291 REMARK 465 LYS D 292 REMARK 465 ASP D 293 REMARK 465 HIS D 294 REMARK 465 GLY D 295 REMARK 465 PHE D 296 REMARK 465 GLU D 297 REMARK 465 VAL D 298 REMARK 465 ALA D 299 REMARK 465 SER D 300 REMARK 465 THR D 301 REMARK 465 SER D 302 REMARK 465 PRO D 303 REMARK 465 GLU D 304 REMARK 465 ASP D 305 REMARK 465 GLU D 306 REMARK 465 SER D 307 REMARK 465 PRO D 308 REMARK 465 GLY D 309 REMARK 465 SER D 310 REMARK 465 ASN D 311 REMARK 465 PRO D 312 REMARK 465 GLU D 313 REMARK 465 PRO D 314 REMARK 465 ASP D 315 REMARK 465 ALA D 316 REMARK 465 THR D 317 REMARK 465 PRO D 318 REMARK 465 PHE D 319 REMARK 465 GLN D 320 REMARK 465 GLU D 321 REMARK 465 GLY D 322 REMARK 465 LEU D 323 REMARK 465 ARG D 324 REMARK 465 THR D 325 REMARK 465 PHE D 326 REMARK 465 ASP D 327 REMARK 465 GLN D 328 REMARK 465 LEU D 329 REMARK 465 ASP D 330 REMARK 465 ALA D 331 REMARK 465 ILE D 332 REMARK 465 SER D 333 REMARK 465 SER D 334 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 206 83.34 35.03 REMARK 500 CYS A 239 177.04 176.72 REMARK 500 ALA A 286 -157.97 -129.35 REMARK 500 THR A 347 152.40 177.74 REMARK 500 ARG A 355 -164.58 -104.87 REMARK 500 ASP A 356 64.78 177.29 REMARK 500 PRO A 357 80.95 -37.24 REMARK 500 LYS A 358 -42.54 163.54 REMARK 500 ILE A 396 -76.55 -56.04 REMARK 500 MET A 406 38.13 -144.18 REMARK 500 PRO B 159 -177.57 -62.48 REMARK 500 CYS B 172 161.28 -48.77 REMARK 500 ARG B 180 68.96 -64.81 REMARK 500 HIS B 198 49.73 70.19 REMARK 500 ASP B 206 70.87 46.05 REMARK 500 SER B 236 -173.74 170.55 REMARK 500 GLN B 245 -70.80 -82.03 REMARK 500 THR B 270 -73.96 -65.44 REMARK 500 CYS B 272 80.94 -155.26 REMARK 500 PRO B 336 81.18 -66.99 REMARK 500 THR B 347 27.32 -141.82 REMARK 500 PRO B 357 4.00 -58.72 REMARK 500 HIS B 376 1.04 -64.43 REMARK 500 SER B 377 10.71 -162.63 REMARK 500 TYR B 397 31.16 -74.27 REMARK 500 GLN B 399 -130.26 -62.32 REMARK 500 MET B 400 144.01 175.98 REMARK 500 ASN C 148 108.76 -57.41 REMARK 500 MET C 157 -177.63 -38.45 REMARK 500 LYS C 189 -47.76 -156.07 REMARK 500 HIS C 198 51.41 70.75 REMARK 500 ASP C 206 68.14 28.45 REMARK 500 GLN C 222 158.00 -48.18 REMARK 500 ALA C 226 31.39 -92.99 REMARK 500 SER C 236 -156.73 -178.51 REMARK 500 CYS C 239 168.97 165.79 REMARK 500 GLN C 245 -49.93 -132.11 REMARK 500 PHE C 267 30.14 -90.27 REMARK 500 CYS C 272 58.76 -152.61 REMARK 500 ALA C 286 -98.65 -169.19 REMARK 500 PRO C 349 -81.92 -28.64 REMARK 500 PHE C 351 58.31 -56.52 REMARK 500 VAL C 352 128.50 -23.59 REMARK 500 TRP C 354 -101.63 -125.40 REMARK 500 ARG C 355 40.82 73.34 REMARK 500 ASP C 356 115.46 39.44 REMARK 500 LYS C 358 -31.25 163.73 REMARK 500 SER C 361 126.45 -39.18 REMARK 500 TRP C 374 -21.92 -148.08 REMARK 500 VAL C 393 -60.70 -20.26 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLT A 668 DBREF 2AR9 A 140 416 UNP P55211 CASP9_HUMAN 140 416 DBREF 2AR9 B 140 416 UNP P55211 CASP9_HUMAN 140 416 DBREF 2AR9 C 140 416 UNP P55211 CASP9_HUMAN 140 416 DBREF 2AR9 D 140 416 UNP P55211 CASP9_HUMAN 140 416 SEQADV 2AR9 MET A 139 UNP P55211 139 INITIATING METHIONINE SEQADV 2AR9 SER A 287 UNP P55211 CYS 287 ENGINEERED MUTATION SEQADV 2AR9 CYS A 402 UNP P55211 GLY 402 ENGINEERED MUTATION SEQADV 2AR9 ILE A 403 UNP P55211 CYS 403 ENGINEERED MUTATION SEQADV 2AR9 VAL A 404 UNP P55211 PHE 404 ENGINEERED MUTATION SEQADV 2AR9 SER A 405 UNP P55211 ASN 405 ENGINEERED MUTATION SEQADV 2AR9 MET A 406 UNP P55211 PHE 406 ENGINEERED MUTATION SEQADV 2AR9 MET B 139 UNP P55211 139 INITIATING METHIONINE SEQADV 2AR9 SER B 287 UNP P55211 CYS 287 ENGINEERED MUTATION SEQADV 2AR9 CYS B 402 UNP P55211 GLY 402 ENGINEERED MUTATION SEQADV 2AR9 ILE B 403 UNP P55211 CYS 403 ENGINEERED MUTATION SEQADV 2AR9 VAL B 404 UNP P55211 PHE 404 ENGINEERED MUTATION SEQADV 2AR9 SER B 405 UNP P55211 ASN 405 ENGINEERED MUTATION SEQADV 2AR9 MET B 406 UNP P55211 PHE 406 ENGINEERED MUTATION SEQADV 2AR9 MET C 139 UNP P55211 139 INITIATING METHIONINE SEQADV 2AR9 SER C 287 UNP P55211 CYS 287 ENGINEERED MUTATION SEQADV 2AR9 CYS C 402 UNP P55211 GLY 402 ENGINEERED MUTATION SEQADV 2AR9 ILE C 403 UNP P55211 CYS 403 ENGINEERED MUTATION SEQADV 2AR9 VAL C 404 UNP P55211 PHE 404 ENGINEERED MUTATION SEQADV 2AR9 SER C 405 UNP P55211 ASN 405 ENGINEERED MUTATION SEQADV 2AR9 MET C 406 UNP P55211 PHE 406 ENGINEERED MUTATION SEQADV 2AR9 MET D 139 UNP P55211 139 INITIATING METHIONINE SEQADV 2AR9 SER D 287 UNP P55211 CYS 287 ENGINEERED MUTATION SEQADV 2AR9 CYS D 402 UNP P55211 GLY 402 ENGINEERED MUTATION SEQADV 2AR9 ILE D 403 UNP P55211 CYS 403 ENGINEERED MUTATION SEQADV 2AR9 VAL D 404 UNP P55211 PHE 404 ENGINEERED MUTATION SEQADV 2AR9 SER D 405 UNP P55211 ASN 405 ENGINEERED MUTATION SEQADV 2AR9 MET D 406 UNP P55211 PHE 406 ENGINEERED MUTATION SEQRES 1 A 278 MET GLY ALA LEU GLU SER LEU ARG GLY ASN ALA ASP LEU SEQRES 2 A 278 ALA TYR ILE LEU SER MET GLU PRO CYS GLY HIS CYS LEU SEQRES 3 A 278 ILE ILE ASN ASN VAL ASN PHE CYS ARG GLU SER GLY LEU SEQRES 4 A 278 ARG THR ARG THR GLY SER ASN ILE ASP CYS GLU LYS LEU SEQRES 5 A 278 ARG ARG ARG PHE SER SER LEU HIS PHE MET VAL GLU VAL SEQRES 6 A 278 LYS GLY ASP LEU THR ALA LYS LYS MET VAL LEU ALA LEU SEQRES 7 A 278 LEU GLU LEU ALA ARG GLN ASP HIS GLY ALA LEU ASP CYS SEQRES 8 A 278 CYS VAL VAL VAL ILE LEU SER HIS GLY CYS GLN ALA SER SEQRES 9 A 278 HIS LEU GLN PHE PRO GLY ALA VAL TYR GLY THR ASP GLY SEQRES 10 A 278 CYS PRO VAL SER VAL GLU LYS ILE VAL ASN ILE PHE ASN SEQRES 11 A 278 GLY THR SER CYS PRO SER LEU GLY GLY LYS PRO LYS LEU SEQRES 12 A 278 PHE PHE ILE GLN ALA SER GLY GLY GLU GLN LYS ASP HIS SEQRES 13 A 278 GLY PHE GLU VAL ALA SER THR SER PRO GLU ASP GLU SER SEQRES 14 A 278 PRO GLY SER ASN PRO GLU PRO ASP ALA THR PRO PHE GLN SEQRES 15 A 278 GLU GLY LEU ARG THR PHE ASP GLN LEU ASP ALA ILE SER SEQRES 16 A 278 SER LEU PRO THR PRO SER ASP ILE PHE VAL SER TYR SER SEQRES 17 A 278 THR PHE PRO GLY PHE VAL SER TRP ARG ASP PRO LYS SER SEQRES 18 A 278 GLY SER TRP TYR VAL GLU THR LEU ASP ASP ILE PHE GLU SEQRES 19 A 278 GLN TRP ALA HIS SER GLU ASP LEU GLN SER LEU LEU LEU SEQRES 20 A 278 ARG VAL ALA ASN ALA VAL SER VAL LYS GLY ILE TYR LYS SEQRES 21 A 278 GLN MET PRO CYS ILE VAL SER MET LEU ARG LYS LYS LEU SEQRES 22 A 278 PHE PHE LYS THR SER SEQRES 1 B 278 MET GLY ALA LEU GLU SER LEU ARG GLY ASN ALA ASP LEU SEQRES 2 B 278 ALA TYR ILE LEU SER MET GLU PRO CYS GLY HIS CYS LEU SEQRES 3 B 278 ILE ILE ASN ASN VAL ASN PHE CYS ARG GLU SER GLY LEU SEQRES 4 B 278 ARG THR ARG THR GLY SER ASN ILE ASP CYS GLU LYS LEU SEQRES 5 B 278 ARG ARG ARG PHE SER SER LEU HIS PHE MET VAL GLU VAL SEQRES 6 B 278 LYS GLY ASP LEU THR ALA LYS LYS MET VAL LEU ALA LEU SEQRES 7 B 278 LEU GLU LEU ALA ARG GLN ASP HIS GLY ALA LEU ASP CYS SEQRES 8 B 278 CYS VAL VAL VAL ILE LEU SER HIS GLY CYS GLN ALA SER SEQRES 9 B 278 HIS LEU GLN PHE PRO GLY ALA VAL TYR GLY THR ASP GLY SEQRES 10 B 278 CYS PRO VAL SER VAL GLU LYS ILE VAL ASN ILE PHE ASN SEQRES 11 B 278 GLY THR SER CYS PRO SER LEU GLY GLY LYS PRO LYS LEU SEQRES 12 B 278 PHE PHE ILE GLN ALA SER GLY GLY GLU GLN LYS ASP HIS SEQRES 13 B 278 GLY PHE GLU VAL ALA SER THR SER PRO GLU ASP GLU SER SEQRES 14 B 278 PRO GLY SER ASN PRO GLU PRO ASP ALA THR PRO PHE GLN SEQRES 15 B 278 GLU GLY LEU ARG THR PHE ASP GLN LEU ASP ALA ILE SER SEQRES 16 B 278 SER LEU PRO THR PRO SER ASP ILE PHE VAL SER TYR SER SEQRES 17 B 278 THR PHE PRO GLY PHE VAL SER TRP ARG ASP PRO LYS SER SEQRES 18 B 278 GLY SER TRP TYR VAL GLU THR LEU ASP ASP ILE PHE GLU SEQRES 19 B 278 GLN TRP ALA HIS SER GLU ASP LEU GLN SER LEU LEU LEU SEQRES 20 B 278 ARG VAL ALA ASN ALA VAL SER VAL LYS GLY ILE TYR LYS SEQRES 21 B 278 GLN MET PRO CYS ILE VAL SER MET LEU ARG LYS LYS LEU SEQRES 22 B 278 PHE PHE LYS THR SER SEQRES 1 C 278 MET GLY ALA LEU GLU SER LEU ARG GLY ASN ALA ASP LEU SEQRES 2 C 278 ALA TYR ILE LEU SER MET GLU PRO CYS GLY HIS CYS LEU SEQRES 3 C 278 ILE ILE ASN ASN VAL ASN PHE CYS ARG GLU SER GLY LEU SEQRES 4 C 278 ARG THR ARG THR GLY SER ASN ILE ASP CYS GLU LYS LEU SEQRES 5 C 278 ARG ARG ARG PHE SER SER LEU HIS PHE MET VAL GLU VAL SEQRES 6 C 278 LYS GLY ASP LEU THR ALA LYS LYS MET VAL LEU ALA LEU SEQRES 7 C 278 LEU GLU LEU ALA ARG GLN ASP HIS GLY ALA LEU ASP CYS SEQRES 8 C 278 CYS VAL VAL VAL ILE LEU SER HIS GLY CYS GLN ALA SER SEQRES 9 C 278 HIS LEU GLN PHE PRO GLY ALA VAL TYR GLY THR ASP GLY SEQRES 10 C 278 CYS PRO VAL SER VAL GLU LYS ILE VAL ASN ILE PHE ASN SEQRES 11 C 278 GLY THR SER CYS PRO SER LEU GLY GLY LYS PRO LYS LEU SEQRES 12 C 278 PHE PHE ILE GLN ALA SER GLY GLY GLU GLN LYS ASP HIS SEQRES 13 C 278 GLY PHE GLU VAL ALA SER THR SER PRO GLU ASP GLU SER SEQRES 14 C 278 PRO GLY SER ASN PRO GLU PRO ASP ALA THR PRO PHE GLN SEQRES 15 C 278 GLU GLY LEU ARG THR PHE ASP GLN LEU ASP ALA ILE SER SEQRES 16 C 278 SER LEU PRO THR PRO SER ASP ILE PHE VAL SER TYR SER SEQRES 17 C 278 THR PHE PRO GLY PHE VAL SER TRP ARG ASP PRO LYS SER SEQRES 18 C 278 GLY SER TRP TYR VAL GLU THR LEU ASP ASP ILE PHE GLU SEQRES 19 C 278 GLN TRP ALA HIS SER GLU ASP LEU GLN SER LEU LEU LEU SEQRES 20 C 278 ARG VAL ALA ASN ALA VAL SER VAL LYS GLY ILE TYR LYS SEQRES 21 C 278 GLN MET PRO CYS ILE VAL SER MET LEU ARG LYS LYS LEU SEQRES 22 C 278 PHE PHE LYS THR SER SEQRES 1 D 278 MET GLY ALA LEU GLU SER LEU ARG GLY ASN ALA ASP LEU SEQRES 2 D 278 ALA TYR ILE LEU SER MET GLU PRO CYS GLY HIS CYS LEU SEQRES 3 D 278 ILE ILE ASN ASN VAL ASN PHE CYS ARG GLU SER GLY LEU SEQRES 4 D 278 ARG THR ARG THR GLY SER ASN ILE ASP CYS GLU LYS LEU SEQRES 5 D 278 ARG ARG ARG PHE SER SER LEU HIS PHE MET VAL GLU VAL SEQRES 6 D 278 LYS GLY ASP LEU THR ALA LYS LYS MET VAL LEU ALA LEU SEQRES 7 D 278 LEU GLU LEU ALA ARG GLN ASP HIS GLY ALA LEU ASP CYS SEQRES 8 D 278 CYS VAL VAL VAL ILE LEU SER HIS GLY CYS GLN ALA SER SEQRES 9 D 278 HIS LEU GLN PHE PRO GLY ALA VAL TYR GLY THR ASP GLY SEQRES 10 D 278 CYS PRO VAL SER VAL GLU LYS ILE VAL ASN ILE PHE ASN SEQRES 11 D 278 GLY THR SER CYS PRO SER LEU GLY GLY LYS PRO LYS LEU SEQRES 12 D 278 PHE PHE ILE GLN ALA SER GLY GLY GLU GLN LYS ASP HIS SEQRES 13 D 278 GLY PHE GLU VAL ALA SER THR SER PRO GLU ASP GLU SER SEQRES 14 D 278 PRO GLY SER ASN PRO GLU PRO ASP ALA THR PRO PHE GLN SEQRES 15 D 278 GLU GLY LEU ARG THR PHE ASP GLN LEU ASP ALA ILE SER SEQRES 16 D 278 SER LEU PRO THR PRO SER ASP ILE PHE VAL SER TYR SER SEQRES 17 D 278 THR PHE PRO GLY PHE VAL SER TRP ARG ASP PRO LYS SER SEQRES 18 D 278 GLY SER TRP TYR VAL GLU THR LEU ASP ASP ILE PHE GLU SEQRES 19 D 278 GLN TRP ALA HIS SER GLU ASP LEU GLN SER LEU LEU LEU SEQRES 20 D 278 ARG VAL ALA ASN ALA VAL SER VAL LYS GLY ILE TYR LYS SEQRES 21 D 278 GLN MET PRO CYS ILE VAL SER MET LEU ARG LYS LYS LEU SEQRES 22 D 278 PHE PHE LYS THR SER HET MLT A 668 9 HETNAM MLT D-MALATE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 5 MLT C4 H6 O5 FORMUL 6 HOH *133(H2 O) HELIX 1 1 GLY A 140 GLY A 147 1 8 HELIX 2 2 CYS A 172 GLY A 176 5 5 HELIX 3 3 GLY A 182 LEU A 197 1 16 HELIX 4 4 THR A 208 ARG A 221 1 14 HELIX 5 5 ASP A 223 LEU A 227 5 5 HELIX 6 6 VAL A 260 ILE A 266 1 7 HELIX 7 7 CYS A 272 GLY A 276 5 5 HELIX 8 8 SER A 361 ALA A 375 1 15 HELIX 9 9 ASP A 379 SER A 392 1 14 HELIX 10 10 GLY B 140 ASN B 148 1 9 HELIX 11 11 GLY B 182 LEU B 197 1 16 HELIX 12 12 THR B 208 GLN B 222 1 15 HELIX 13 13 ASP B 223 LEU B 227 5 5 HELIX 14 14 VAL B 260 PHE B 267 1 8 HELIX 15 15 CYS B 272 GLY B 276 5 5 HELIX 16 16 SER B 361 ALA B 375 1 15 HELIX 17 17 ASP B 379 GLY B 395 1 17 HELIX 18 18 LEU C 142 ASN C 148 1 7 HELIX 19 19 SER C 183 LEU C 197 1 15 HELIX 20 20 THR C 208 ALA C 220 1 13 HELIX 21 21 VAL C 260 PHE C 267 1 8 HELIX 22 22 CYS C 272 GLY C 276 5 5 HELIX 23 23 SER C 361 GLN C 373 1 13 HELIX 24 24 ASP C 379 LYS C 394 1 16 HELIX 25 25 GLY D 140 ASN D 148 1 9 HELIX 26 26 GLY D 182 LEU D 197 1 16 HELIX 27 27 THR D 208 GLN D 222 1 15 HELIX 28 28 ASP D 223 LEU D 227 5 5 HELIX 29 29 VAL D 260 PHE D 267 1 8 HELIX 30 30 CYS D 272 GLY D 276 5 5 HELIX 31 31 SER D 361 ALA D 375 1 15 HELIX 32 32 ASP D 379 GLY D 395 1 17 SHEET 1 A 2 ALA A 152 TYR A 153 0 SHEET 2 A 2 LYS A 410 LEU A 411 1 O LYS A 410 N TYR A 153 SHEET 1 B12 PHE A 199 GLY A 205 0 SHEET 2 B12 GLY A 161 ASN A 167 1 N ASN A 167 O LYS A 204 SHEET 3 B12 CYS A 229 LEU A 235 1 O VAL A 231 N HIS A 162 SHEET 4 B12 LYS A 280 GLN A 285 1 O PHE A 283 N VAL A 232 SHEET 5 B12 ILE A 341 TYR A 345 1 O SER A 344 N PHE A 282 SHEET 6 B12 CYS A 402 SER A 405 -1 O CYS A 402 N TYR A 345 SHEET 7 B12 CYS B 402 SER B 405 -1 O SER B 405 N ILE A 403 SHEET 8 B12 ILE B 341 SER B 346 -1 N TYR B 345 O CYS B 402 SHEET 9 B12 LYS B 280 GLN B 285 1 N ILE B 284 O SER B 346 SHEET 10 B12 CYS B 230 LEU B 235 1 N CYS B 230 O LEU B 281 SHEET 11 B12 GLY B 161 ASN B 167 1 N LEU B 164 O VAL B 233 SHEET 12 B12 PHE B 199 GLY B 205 1 O GLU B 202 N CYS B 163 SHEET 1 C 3 GLY A 238 CYS A 239 0 SHEET 2 C 3 ALA A 249 TYR A 251 -1 O ALA A 249 N CYS A 239 SHEET 3 C 3 PRO A 257 SER A 259 -1 O VAL A 258 N VAL A 250 SHEET 1 D 2 ALA B 249 TYR B 251 0 SHEET 2 D 2 PRO B 257 SER B 259 -1 O VAL B 258 N VAL B 250 SHEET 1 E 2 ALA C 152 TYR C 153 0 SHEET 2 E 2 LYS C 410 LEU C 411 1 O LYS C 410 N TYR C 153 SHEET 1 F12 PHE C 199 GLY C 205 0 SHEET 2 F12 GLY C 161 ASN C 167 1 N ILE C 165 O GLU C 202 SHEET 3 F12 CYS C 230 LEU C 235 1 O LEU C 235 N ILE C 166 SHEET 4 F12 LYS C 280 GLN C 285 1 O LEU C 281 N CYS C 230 SHEET 5 F12 ILE C 341 TYR C 345 1 O SER C 344 N ILE C 284 SHEET 6 F12 CYS C 402 SER C 405 -1 O CYS C 402 N TYR C 345 SHEET 7 F12 CYS D 402 SER D 405 -1 O SER D 405 N ILE C 403 SHEET 8 F12 ILE D 341 SER D 346 -1 N TYR D 345 O CYS D 402 SHEET 9 F12 LYS D 280 GLN D 285 1 N ILE D 284 O SER D 346 SHEET 10 F12 CYS D 230 LEU D 235 1 N CYS D 230 O LEU D 281 SHEET 11 F12 GLY D 161 ASN D 167 1 N LEU D 164 O VAL D 233 SHEET 12 F12 PHE D 199 GLY D 205 1 O GLU D 202 N CYS D 163 SHEET 1 G 3 GLY C 238 CYS C 239 0 SHEET 2 G 3 ALA C 249 TYR C 251 -1 O ALA C 249 N CYS C 239 SHEET 3 G 3 PRO C 257 SER C 259 -1 O VAL C 258 N VAL C 250 SHEET 1 H 2 ALA D 249 TYR D 251 0 SHEET 2 H 2 PRO D 257 SER D 259 -1 O VAL D 258 N VAL D 250 CISPEP 1 GLU A 158 PRO A 159 0 1.00 CISPEP 2 GLU B 158 PRO B 159 0 -0.53 CISPEP 3 GLU C 158 PRO C 159 0 -0.33 CISPEP 4 GLU D 158 PRO D 159 0 0.14 SITE 1 AC1 2 TRP A 354 ARG A 355 CRYST1 144.698 78.055 125.963 90.00 112.50 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006911 0.000000 0.002863 0.00000 SCALE2 0.000000 0.012811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008593 0.00000 MASTER 510 0 1 32 38 0 1 6 0 0 0 88 END