HEADER LIGASE 04-AUG-05 2AKW TITLE CRYSTAL STRUCTURE OF T.THERMOPHILUS PHENYLALANYL-TRNA SYNTHETASE TITLE 2 COMPLEXED WITH P-CL-PHENYLALANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHENYLALANINE--TRNA LIGASE ALPHA CHAIN; PHERS; COMPND 5 EC: 6.1.1.20; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PHENYLALANINE--TRNA LIGASE BETA CHAIN; PHERS; COMPND 10 EC: 6.1.1.20 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 OTHER_DETAILS: GENE PHES; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 8 ORGANISM_TAXID: 300852; SOURCE 9 STRAIN: HB8; SOURCE 10 OTHER_DETAILS: GENE PHET KEYWDS PROTEIN-UNNATURAL AMINO ACID COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR O.M.KOTIK-KOGAN,N.A.MOOR,D.E.TWOROWSKI,M.G.SAFRO REVDAT 3 13-JUL-11 2AKW 1 VERSN REVDAT 2 24-FEB-09 2AKW 1 VERSN REVDAT 1 27-DEC-05 2AKW 0 JRNL AUTH O.M.KOTIK-KOGAN,N.A.MOOR,D.E.TWOROWSKI,M.G.SAFRO JRNL TITL STRUCTURAL BASIS FOR DISCRIMINATION OF L-PHENYLALANINE FROM JRNL TITL 2 L-TYROSINE BY PHENYLALANYL-TRNA SYNTHETASE JRNL REF STRUCTURE V. 13 1799 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 16338408 JRNL DOI 10.1016/J.STR.2005.08.013 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2329075.750 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 58657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2896 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9002 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 504 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8250 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.74000 REMARK 3 B22 (A**2) : 6.74000 REMARK 3 B33 (A**2) : -13.48000 REMARK 3 B12 (A**2) : 13.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.09 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.530 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.350 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.550 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.680 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 54.42 REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.TOP REMARK 3 PARAMETER FILE 2 : WATER.TOP REMARK 3 PARAMETER FILE 3 : FCL.TOP REMARK 3 PARAMETER FILE 4 : ION.TOP REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.PARAM REMARK 3 TOPOLOGY FILE 2 : WATER_REP.PARAM REMARK 3 TOPOLOGY FILE 3 : FCL.PAR REMARK 3 TOPOLOGY FILE 4 : ION.PARAM REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2AKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-05. REMARK 100 THE RCSB ID CODE IS RCSB034015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58657 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1PYS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM IMIDAZOLE-HCL (PH 7.2), 27% (NH4) REMARK 280 2SO4, 1MM MGCL2, 1MM NAN3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.34000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.17000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.17000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.34000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HETERODIMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY HTE OPERATIONS : Y, X, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 27130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 167 CD2 LEU A 301 2.05 REMARK 500 NH2 ARG B 407 O1 SO4 B 786 2.08 REMARK 500 OD2 ASP B 176 NH2 ARG B 465 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 99 N LEU B 99 CA 0.287 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 38 N - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 LEU B 99 N - CA - CB ANGL. DEV. = -34.4 DEGREES REMARK 500 LEU B 99 N - CA - C ANGL. DEV. = 25.3 DEGREES REMARK 500 LEU B 99 C - N - CA ANGL. DEV. = -24.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 134 -73.74 -126.27 REMARK 500 HIS A 142 13.12 53.94 REMARK 500 LEU A 165 34.81 -91.87 REMARK 500 ASP A 209 -155.48 -118.05 REMARK 500 GLU A 262 110.15 -174.73 REMARK 500 GLU A 273 -71.57 -57.86 REMARK 500 ALA A 283 -167.69 -166.25 REMARK 500 VAL A 286 140.67 -36.32 REMARK 500 VAL A 349 103.84 -30.93 REMARK 500 SER B 17 166.65 177.43 REMARK 500 ARG B 34 148.33 178.76 REMARK 500 PHE B 39 65.07 -115.43 REMARK 500 GLU B 148 -6.66 -54.98 REMARK 500 TRP B 150 74.98 -151.54 REMARK 500 ARG B 164 60.23 -113.15 REMARK 500 PRO B 199 41.95 -69.75 REMARK 500 ALA B 210 66.86 -116.37 REMARK 500 ARG B 222 76.12 -117.48 REMARK 500 ASN B 243 172.18 179.82 REMARK 500 ASN B 244 -81.53 -21.31 REMARK 500 ALA B 257 52.89 39.03 REMARK 500 GLU B 281 136.08 -39.22 REMARK 500 PRO B 295 -5.37 -54.41 REMARK 500 ALA B 314 122.68 -34.59 REMARK 500 VAL B 316 -56.81 -120.61 REMARK 500 ARG B 349 -38.07 -37.62 REMARK 500 ASP B 365 108.41 -58.34 REMARK 500 SER B 397 78.27 -151.15 REMARK 500 SER B 418 56.27 -147.24 REMARK 500 ARG B 454 -35.59 -132.28 REMARK 500 PHE B 479 155.77 178.44 REMARK 500 ASP B 484 7.42 -66.84 REMARK 500 ARG B 525 70.10 57.19 REMARK 500 ALA B 568 124.24 178.25 REMARK 500 ARG B 578 99.33 171.63 REMARK 500 GLU B 579 -54.47 82.50 REMARK 500 PHE B 590 149.89 175.89 REMARK 500 ALA B 599 -158.89 -97.19 REMARK 500 LYS B 600 -45.63 -134.97 REMARK 500 VAL B 638 73.72 -111.68 REMARK 500 PRO B 666 -179.29 -68.66 REMARK 500 LEU B 697 137.54 -178.98 REMARK 500 GLU B 723 -67.06 -101.06 REMARK 500 LEU B 725 95.39 -177.48 REMARK 500 ASP B 729 127.12 -176.44 REMARK 500 PRO B 737 96.71 -67.89 REMARK 500 GLU B 738 141.67 -29.09 REMARK 500 GLU B 770 -71.03 -68.04 REMARK 500 LEU B 779 76.04 -161.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL B 38 21.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 798 DISTANCE = 5.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 901 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 262 OE2 REMARK 620 2 GLU B 461 OE1 66.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 786 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 200 A 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PYS RELATED DB: PDB REMARK 900 NATIVE PROTEIN REMARK 900 RELATED ID: 1EIY RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH TRNA REMARK 900 RELATED ID: 1JJC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHENYLALANYL-ADENYLATE REMARK 900 RELATED ID: 1B70 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHE REMARK 900 RELATED ID: 1B7Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHE-ADENYLATE ANALOGUE REMARK 900 RELATED ID: 2ALY RELATED DB: PDB DBREF 2AKW A 85 350 UNP P27001 SYFA_THETH 85 350 DBREF 2AKW B 1 785 UNP P27002 SYFB_THETH 1 785 SEQRES 1 A 266 ARG VAL ASP VAL SER LEU PRO GLY ALA SER LEU PHE SER SEQRES 2 A 266 GLY GLY LEU HIS PRO ILE THR LEU MET GLU ARG GLU LEU SEQRES 3 A 266 VAL GLU ILE PHE ARG ALA LEU GLY TYR GLN ALA VAL GLU SEQRES 4 A 266 GLY PRO GLU VAL GLU SER GLU PHE PHE ASN PHE ASP ALA SEQRES 5 A 266 LEU ASN ILE PRO GLU HIS HIS PRO ALA ARG ASP MET TRP SEQRES 6 A 266 ASP THR PHE TRP LEU THR GLY GLU GLY PHE ARG LEU GLU SEQRES 7 A 266 GLY PRO LEU GLY GLU GLU VAL GLU GLY ARG LEU LEU LEU SEQRES 8 A 266 ARG THR HIS THR SER PRO MET GLN VAL ARG TYR MET VAL SEQRES 9 A 266 ALA HIS THR PRO PRO PHE ARG ILE VAL VAL PRO GLY ARG SEQRES 10 A 266 VAL PHE ARG PHE GLU GLN THR ASP ALA THR HIS GLU ALA SEQRES 11 A 266 VAL PHE HIS GLN LEU GLU GLY LEU VAL VAL GLY GLU GLY SEQRES 12 A 266 ILE ALA MET ALA HIS LEU LYS GLY ALA ILE TYR GLU LEU SEQRES 13 A 266 ALA GLN ALA LEU PHE GLY PRO ASP SER LYS VAL ARG PHE SEQRES 14 A 266 GLN PRO VAL TYR PHE PRO PHE VAL GLU PRO GLY ALA GLN SEQRES 15 A 266 PHE ALA VAL TRP TRP PRO GLU GLY GLY LYS TRP LEU GLU SEQRES 16 A 266 LEU GLY GLY ALA GLY MET VAL HIS PRO LYS VAL PHE GLN SEQRES 17 A 266 ALA VAL ASP ALA TYR ARG GLU ARG LEU GLY LEU PRO PRO SEQRES 18 A 266 ALA TYR ARG GLY VAL THR GLY PHE ALA PHE GLY LEU GLY SEQRES 19 A 266 VAL GLU ARG LEU ALA MET LEU ARG TYR GLY ILE PRO ASP SEQRES 20 A 266 ILE ARG TYR PHE PHE GLY GLY ARG LEU LYS PHE LEU GLU SEQRES 21 A 266 GLN PHE LYS GLY VAL LEU SEQRES 1 B 785 MET ARG VAL PRO PHE SER TRP LEU LYS ALA TYR VAL PRO SEQRES 2 B 785 GLU LEU GLU SER PRO GLU VAL LEU GLU GLU ARG LEU ALA SEQRES 3 B 785 GLY LEU GLY PHE GLU THR ASP ARG ILE GLU ARG VAL PHE SEQRES 4 B 785 PRO ILE PRO ARG GLY VAL VAL PHE ALA ARG VAL LEU GLU SEQRES 5 B 785 ALA HIS PRO ILE PRO GLY THR ARG LEU LYS ARG LEU VAL SEQRES 6 B 785 LEU ASP ALA GLY ARG THR VAL GLU VAL VAL SER GLY ALA SEQRES 7 B 785 GLU ASN ALA ARG LYS GLY ILE GLY VAL ALA LEU ALA LEU SEQRES 8 B 785 PRO GLY THR GLU LEU PRO GLY LEU GLY GLN LYS VAL GLY SEQRES 9 B 785 GLU ARG VAL ILE GLN GLY VAL ARG SER PHE GLY MET ALA SEQRES 10 B 785 LEU SER PRO ARG GLU LEU GLY VAL GLY GLU TYR GLY GLY SEQRES 11 B 785 GLY LEU LEU GLU PHE PRO GLU ASP ALA LEU PRO PRO GLY SEQRES 12 B 785 THR PRO LEU SER GLU ALA TRP PRO GLU GLU VAL VAL LEU SEQRES 13 B 785 ASP LEU GLU VAL THR PRO ASN ARG PRO ASP ALA LEU GLY SEQRES 14 B 785 LEU LEU GLY LEU ALA ARG ASP LEU HIS ALA LEU GLY TYR SEQRES 15 B 785 ALA LEU VAL GLU PRO GLU ALA ALA LEU LYS ALA GLU ALA SEQRES 16 B 785 LEU PRO LEU PRO PHE ALA LEU LYS VAL GLU ASP PRO GLU SEQRES 17 B 785 GLY ALA PRO HIS PHE THR LEU GLY TYR ALA PHE GLY LEU SEQRES 18 B 785 ARG VAL ALA PRO SER PRO LEU TRP MET GLN ARG ALA LEU SEQRES 19 B 785 PHE ALA ALA GLY MET ARG PRO ILE ASN ASN VAL VAL ASP SEQRES 20 B 785 VAL THR ASN TYR VAL MET LEU GLU ARG ALA GLN PRO MET SEQRES 21 B 785 HIS ALA PHE ASP LEU ARG PHE VAL GLY GLU GLY ILE ALA SEQRES 22 B 785 VAL ARG ARG ALA ARG GLU GLY GLU ARG LEU LYS THR LEU SEQRES 23 B 785 ASP GLY VAL GLU ARG THR LEU HIS PRO GLU ASP LEU VAL SEQRES 24 B 785 ILE ALA GLY TRP ARG GLY GLU GLU SER PHE PRO LEU GLY SEQRES 25 B 785 LEU ALA GLY VAL MET GLY GLY ALA GLU SER GLU VAL ARG SEQRES 26 B 785 GLU ASP THR GLU ALA ILE ALA LEU GLU VAL ALA CYS PHE SEQRES 27 B 785 ASP PRO VAL SER ILE ARG LYS THR ALA ARG ARG HIS GLY SEQRES 28 B 785 LEU ARG THR GLU ALA SER HIS ARG PHE GLU ARG GLY VAL SEQRES 29 B 785 ASP PRO LEU GLY GLN VAL PRO ALA GLN ARG ARG ALA LEU SEQRES 30 B 785 SER LEU LEU GLN ALA LEU ALA GLY ALA ARG VAL ALA GLU SEQRES 31 B 785 ALA LEU LEU GLU ALA GLY SER PRO LYS PRO PRO GLU ALA SEQRES 32 B 785 ILE PRO PHE ARG PRO GLU TYR ALA ASN ARG LEU LEU GLY SEQRES 33 B 785 THR SER TYR PRO GLU ALA GLU GLN ILE ALA ILE LEU LYS SEQRES 34 B 785 ARG LEU GLY CYS ARG VAL GLU GLY GLU GLY PRO THR TYR SEQRES 35 B 785 ARG VAL THR PRO PRO SER HIS ARG LEU ASP LEU ARG LEU SEQRES 36 B 785 GLU GLU ASP LEU VAL GLU GLU VAL ALA ARG ILE GLN GLY SEQRES 37 B 785 TYR GLU THR ILE PRO LEU ALA LEU PRO ALA PHE PHE PRO SEQRES 38 B 785 ALA PRO ASP ASN ARG GLY VAL GLU ALA PRO TYR ARG LYS SEQRES 39 B 785 GLU GLN ARG LEU ARG GLU VAL LEU SER GLY LEU GLY PHE SEQRES 40 B 785 GLN GLU VAL TYR THR TYR SER PHE MET ASP PRO GLU ASP SEQRES 41 B 785 ALA ARG ARG PHE ARG LEU ASP PRO PRO ARG LEU LEU LEU SEQRES 42 B 785 LEU ASN PRO LEU ALA PRO GLU LYS ALA ALA LEU ARG THR SEQRES 43 B 785 HIS LEU PHE PRO GLY LEU VAL ARG VAL LEU LYS GLU ASN SEQRES 44 B 785 LEU ASP LEU ASP ARG PRO GLU ARG ALA LEU LEU PHE GLU SEQRES 45 B 785 VAL GLY ARG VAL PHE ARG GLU ARG GLU GLU THR HIS LEU SEQRES 46 B 785 ALA GLY LEU LEU PHE GLY GLU GLY VAL GLY LEU PRO TRP SEQRES 47 B 785 ALA LYS GLU ARG LEU SER GLY TYR PHE LEU LEU LYS GLY SEQRES 48 B 785 TYR LEU GLU ALA LEU PHE ALA ARG LEU GLY LEU ALA PHE SEQRES 49 B 785 ARG VAL GLU ALA GLN ALA PHE PRO PHE LEU HIS PRO GLY SEQRES 50 B 785 VAL SER GLY ARG VAL LEU VAL GLU GLY GLU GLU VAL GLY SEQRES 51 B 785 PHE LEU GLY ALA LEU HIS PRO GLU ILE ALA GLN GLU LEU SEQRES 52 B 785 GLU LEU PRO PRO VAL HIS LEU PHE GLU LEU ARG LEU PRO SEQRES 53 B 785 LEU PRO ASP LYS PRO LEU ALA PHE GLN ASP PRO SER ARG SEQRES 54 B 785 HIS PRO ALA ALA PHE ARG ASP LEU ALA VAL VAL VAL PRO SEQRES 55 B 785 ALA PRO THR PRO TYR GLY GLU VAL GLU ALA LEU VAL ARG SEQRES 56 B 785 GLU ALA ALA GLY PRO TYR LEU GLU SER LEU ALA LEU PHE SEQRES 57 B 785 ASP LEU TYR GLN GLY PRO PRO LEU PRO GLU GLY HIS LYS SEQRES 58 B 785 SER LEU ALA PHE HIS LEU ARG PHE ARG HIS PRO LYS ARG SEQRES 59 B 785 THR LEU ARG ASP GLU GLU VAL GLU GLU ALA VAL SER ARG SEQRES 60 B 785 VAL ALA GLU ALA LEU ARG ALA ARG GLY PHE GLY LEU ARG SEQRES 61 B 785 GLY LEU ASP THR PRO HET MN A 901 1 HET SO4 B 786 5 HET 200 A 999 13 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM 200 4-CHLORO-L-PHENYLALANINE FORMUL 3 MN MN 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 200 C9 H10 CL N O2 FORMUL 6 HOH *197(H2 O) HELIX 1 1 HIS A 101 ALA A 116 1 16 HELIX 2 2 GLU A 130 PHE A 134 1 5 HELIX 3 3 ASP A 135 ASN A 138 5 4 HELIX 4 4 HIS A 143 TRP A 149 5 7 HELIX 5 5 SER A 180 HIS A 190 1 11 HELIX 6 6 ALA A 229 GLY A 246 1 18 HELIX 7 7 HIS A 287 LEU A 301 1 15 HELIX 8 8 VAL A 319 GLY A 328 1 10 HELIX 9 9 ASP A 331 PHE A 335 5 5 HELIX 10 10 ARG A 339 GLU A 344 1 6 HELIX 11 11 GLN A 345 LYS A 347 5 3 HELIX 12 12 PHE B 5 LYS B 9 1 5 HELIX 13 13 SER B 17 GLY B 29 1 13 HELIX 14 14 SER B 119 GLY B 124 1 6 HELIX 15 15 PRO B 145 TRP B 150 5 6 HELIX 16 16 ARG B 164 LEU B 168 5 5 HELIX 17 17 GLY B 169 LEU B 180 1 12 HELIX 18 18 PRO B 227 ALA B 237 1 11 HELIX 19 19 ASN B 243 ALA B 257 1 15 HELIX 20 20 LEU B 265 GLY B 269 1 5 HELIX 21 21 ASP B 339 HIS B 350 1 12 HELIX 22 22 THR B 354 GLY B 363 1 10 HELIX 23 23 GLY B 368 GLY B 385 1 18 HELIX 24 24 ARG B 407 GLY B 416 1 10 HELIX 25 25 PRO B 420 LEU B 431 1 12 HELIX 26 26 LEU B 455 GLY B 468 1 14 HELIX 27 27 TYR B 469 ILE B 472 5 4 HELIX 28 28 ALA B 482 ARG B 486 5 5 HELIX 29 29 GLU B 489 GLY B 506 1 18 HELIX 30 30 GLU B 519 PHE B 524 1 6 HELIX 31 31 ALA B 538 ALA B 542 5 5 HELIX 32 32 LEU B 548 ASP B 563 1 16 HELIX 33 33 GLY B 605 LEU B 620 1 16 HELIX 34 34 HIS B 656 LEU B 663 1 8 HELIX 35 35 PRO B 706 ALA B 718 1 13 HELIX 36 36 ARG B 757 ALA B 774 1 18 SHEET 1 A 7 GLN A 120 ALA A 121 0 SHEET 2 A 7 PHE A 194 PHE A 203 1 O VAL A 197 N GLN A 120 SHEET 3 A 7 VAL A 215 GLY A 225 -1 O PHE A 216 N VAL A 202 SHEET 4 A 7 THR A 311 GLY A 318 -1 O PHE A 313 N VAL A 223 SHEET 5 A 7 LYS A 276 VAL A 286 -1 N GLY A 282 O GLY A 316 SHEET 6 A 7 VAL A 261 TRP A 271 -1 N ALA A 265 O ALA A 283 SHEET 7 A 7 VAL A 251 GLN A 254 -1 N GLN A 254 O GLN A 266 SHEET 1 B 4 VAL A 127 SER A 129 0 SHEET 2 B 4 LEU A 173 LEU A 175 -1 O LEU A 174 N GLU A 128 SHEET 3 B 4 PHE A 152 THR A 155 -1 N PHE A 152 O LEU A 175 SHEET 4 B 4 LEU B 532 LEU B 533 -1 O LEU B 532 N THR A 155 SHEET 1 C 3 ARG B 2 PRO B 4 0 SHEET 2 C 3 VAL B 154 LEU B 158 -1 O LEU B 156 N VAL B 3 SHEET 3 C 3 THR B 32 ARG B 37 -1 N GLU B 36 O VAL B 155 SHEET 1 D 5 THR B 71 SER B 76 0 SHEET 2 D 5 LYS B 62 ASP B 67 -1 N LEU B 66 O VAL B 72 SHEET 3 D 5 VAL B 45 PRO B 55 -1 N HIS B 54 O ARG B 63 SHEET 4 D 5 ILE B 85 ALA B 90 -1 O LEU B 89 N VAL B 46 SHEET 5 D 5 MET B 116 ALA B 117 -1 O MET B 116 N ALA B 90 SHEET 1 E 5 THR B 71 SER B 76 0 SHEET 2 E 5 LYS B 62 ASP B 67 -1 N LEU B 66 O VAL B 72 SHEET 3 E 5 VAL B 45 PRO B 55 -1 N HIS B 54 O ARG B 63 SHEET 4 E 5 ILE B 85 ALA B 90 -1 O LEU B 89 N VAL B 46 SHEET 5 E 5 PHE B 135 PRO B 136 -1 O PHE B 135 N GLY B 86 SHEET 1 F 2 GLU B 105 ILE B 108 0 SHEET 2 F 2 VAL B 111 PHE B 114 -1 O SER B 113 N ARG B 106 SHEET 1 G 5 ALA B 193 GLU B 194 0 SHEET 2 G 5 ARG B 387 ALA B 389 1 O VAL B 388 N GLU B 194 SHEET 3 G 5 HIS B 212 PHE B 219 -1 N PHE B 219 O ARG B 387 SHEET 4 G 5 ILE B 331 CYS B 337 -1 O LEU B 333 N GLY B 216 SHEET 5 G 5 MET B 260 ASP B 264 -1 N HIS B 261 O GLU B 334 SHEET 1 H 4 ALA B 193 GLU B 194 0 SHEET 2 H 4 ARG B 387 ALA B 389 1 O VAL B 388 N GLU B 194 SHEET 3 H 4 HIS B 212 PHE B 219 -1 N PHE B 219 O ARG B 387 SHEET 4 H 4 LEU B 393 ALA B 395 -1 O ALA B 395 N PHE B 213 SHEET 1 I 5 ALA B 201 VAL B 204 0 SHEET 2 I 5 GLY B 271 ARG B 276 1 O ILE B 272 N ALA B 201 SHEET 3 I 5 LEU B 298 ARG B 304 -1 O ALA B 301 N ALA B 273 SHEET 4 I 5 GLU B 307 LEU B 313 -1 O LEU B 311 N ILE B 300 SHEET 5 I 5 MET B 317 GLY B 318 -1 O MET B 317 N LEU B 313 SHEET 1 J 2 ARG B 282 LYS B 284 0 SHEET 2 J 2 GLU B 290 THR B 292 -1 O ARG B 291 N LEU B 283 SHEET 1 K 3 ILE B 404 PHE B 406 0 SHEET 2 K 3 TYR B 442 THR B 445 -1 O TYR B 442 N PHE B 406 SHEET 3 K 3 ARG B 434 GLU B 436 -1 N GLU B 436 O ARG B 443 SHEET 1 L 7 GLN B 508 GLU B 509 0 SHEET 2 L 7 LEU B 570 PHE B 577 1 O PHE B 571 N GLN B 508 SHEET 3 L 7 GLU B 581 LEU B 589 -1 O GLU B 582 N VAL B 576 SHEET 4 L 7 HIS B 669 ARG B 674 -1 O LEU B 673 N LEU B 585 SHEET 5 L 7 GLU B 647 LEU B 655 -1 N GLY B 653 O LEU B 670 SHEET 6 L 7 LEU B 634 VAL B 644 -1 N HIS B 635 O ALA B 654 SHEET 7 L 7 VAL B 626 ALA B 628 -1 N GLU B 627 O ARG B 641 SHEET 1 M 2 PHE B 515 MET B 516 0 SHEET 2 M 2 ALA B 543 LEU B 544 -1 O ALA B 543 N MET B 516 SHEET 1 N 2 VAL B 594 GLY B 595 0 SHEET 2 N 2 ARG B 602 LEU B 603 -1 O LEU B 603 N VAL B 594 SHEET 1 O 4 LEU B 722 TYR B 731 0 SHEET 2 O 4 HIS B 740 PHE B 749 -1 O ALA B 744 N ASP B 729 SHEET 3 O 4 ALA B 693 PRO B 702 -1 N VAL B 701 O LYS B 741 SHEET 4 O 4 GLY B 781 THR B 784 -1 O THR B 784 N ASP B 696 LINK MN MN A 901 OE2 GLU A 262 1555 1555 2.68 LINK MN MN A 901 OE1 GLU B 461 1555 1555 2.61 CISPEP 1 PRO A 192 PRO A 193 0 -0.13 CISPEP 2 GLU A 262 PRO A 263 0 -0.31 CISPEP 3 GLY B 439 PRO B 440 0 0.32 CISPEP 4 LEU B 675 PRO B 676 0 -0.09 CISPEP 5 PRO B 734 PRO B 735 0 0.33 SITE 1 AC1 3 GLU A 262 ASP B 452 GLU B 461 SITE 1 AC2 2 ARG B 407 ARG B 413 SITE 1 AC3 13 TRP A 149 HIS A 178 SER A 180 ARG A 204 SITE 2 AC3 13 GLN A 218 GLU A 220 PHE A 258 PHE A 260 SITE 3 AC3 13 VAL A 261 ALA A 283 ALA A 314 PHE A 315 SITE 4 AC3 13 GLY A 316 CRYST1 172.980 172.980 138.510 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005781 0.003338 0.000000 0.00000 SCALE2 0.000000 0.006675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007220 0.00000 MASTER 422 0 3 36 60 0 6 6 0 0 0 82 END