HEADER TRANSFERASE 28-JUL-05 2AI2 TITLE PURINE NUCLEOSIDE PHOSPHORYLASE FROM CALF SPLEEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INOSINE PHOSPHORYLASE, PNP; COMPND 5 EC: 2.4.2.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 ORGAN: SPLEEN; SOURCE 6 OTHER_DETAILS: CALF SPLEEN PURINE NUCLEOSIDE PHOSPHORYLASE PURCHASED SOURCE 7 FROM SIGMA CO. KEYWDS PURINE NUCLEOSIDE PHOSPHORYLASE, MULTISUBSTRATE ANALOG INHIBITOR, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.V.TOMS,W.WANG,Y.LI,B.GANEM,S.E.EALICK REVDAT 3 13-JUL-11 2AI2 1 VERSN REVDAT 2 24-FEB-09 2AI2 1 VERSN REVDAT 1 25-OCT-05 2AI2 0 JRNL AUTH A.V.TOMS,W.WANG,Y.LI,B.GANEM,S.E.EALICK JRNL TITL NOVEL MULTISUBSTRATE INHIBITORS OF MAMMALIAN PURINE JRNL TITL 2 NUCLEOSIDE PHOSPHORYLASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 1449 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 16239721 JRNL DOI 10.1107/S0907444905025503 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.MAO,W.J.COOK,M.ZHOU,A.A.FEDOROV,S.C.ALMO,S.E.EALICK REMARK 1 TITL CALF SPLEEN PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH REMARK 1 TITL 2 SUBSTRATES AND SUBSTRATE ANALOGS. REMARK 1 REF BIOCHEMISTRY V. 37 7135 1998 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 9585525 REMARK 1 DOI 10.1021/BI9723919 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 485117.310 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 28798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1416 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4203 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 230 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.83 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.360 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.080 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.030 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 53.30 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : TRIS.PARAM REMARK 3 PARAMETER FILE 5 : P1D.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : TRIS.TOP REMARK 3 TOPOLOGY FILE 5 : P1D.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB033920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9231 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28798 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43900 REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1A9P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2K MME , PH 7.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.62150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.62150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.62150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.62150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.62150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.62150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 46.62150 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 46.62150 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 46.62150 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 46.62150 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 46.62150 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 46.62150 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 46.62150 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 46.62150 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 46.62150 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 46.62150 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 46.62150 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 46.62150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 139.86450 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 139.86450 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -139.86450 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 139.86450 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -258.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -46.62150 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 46.62150 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 93.24300 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 46.62150 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 93.24300 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 46.62150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 N 144 A 292 LIES ON A SPECIAL POSITION. REMARK 375 ZN ZN A 291 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 THR A 60 REMARK 465 VAL A 61 REMARK 465 PRO A 62 REMARK 465 GLY A 63 REMARK 465 HIS A 64 REMARK 465 ALA A 65 REMARK 465 PRO A 283 REMARK 465 VAL A 284 REMARK 465 SER A 285 REMARK 465 GLY A 286 REMARK 465 HIS A 287 REMARK 465 THR A 288 REMARK 465 GLY A 289 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 GLN A 252 CG CD OE1 NE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 GLN A 269 CG CD OE1 NE2 REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 55 -13.71 77.30 REMARK 500 PHE A 159 77.73 -118.52 REMARK 500 SER A 220 -155.66 -156.55 REMARK 500 THR A 221 -56.54 65.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 290 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2003 O REMARK 620 2 HOH A2000 O 90.8 REMARK 620 3 HOH A2002 O 81.2 91.0 REMARK 620 4 HOH A2001 O 171.6 84.2 92.2 REMARK 620 5 HOH A2007 O 88.2 173.4 82.4 96.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 144 A 292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P1D A 293 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AI1 RELATED DB: PDB REMARK 900 RELATED ID: 2AI3 RELATED DB: PDB DBREF 2AI2 A 1 289 UNP P55859 PNPH_BOVIN 1 289 SEQRES 1 A 289 MET GLN ASN GLY TYR THR TYR GLU ASP TYR GLN ASP THR SEQRES 2 A 289 ALA LYS TRP LEU LEU SER HIS THR GLU GLN ARG PRO GLN SEQRES 3 A 289 VAL ALA VAL ILE CYS GLY SER GLY LEU GLY GLY LEU VAL SEQRES 4 A 289 ASN LYS LEU THR GLN ALA GLN THR PHE ASP TYR SER GLU SEQRES 5 A 289 ILE PRO ASN PHE PRO GLU SER THR VAL PRO GLY HIS ALA SEQRES 6 A 289 GLY ARG LEU VAL PHE GLY ILE LEU ASN GLY ARG ALA CYS SEQRES 7 A 289 VAL MET MET GLN GLY ARG PHE HIS MET TYR GLU GLY TYR SEQRES 8 A 289 PRO PHE TRP LYS VAL THR PHE PRO VAL ARG VAL PHE ARG SEQRES 9 A 289 LEU LEU GLY VAL GLU THR LEU VAL VAL THR ASN ALA ALA SEQRES 10 A 289 GLY GLY LEU ASN PRO ASN PHE GLU VAL GLY ASP ILE MET SEQRES 11 A 289 LEU ILE ARG ASP HIS ILE ASN LEU PRO GLY PHE SER GLY SEQRES 12 A 289 GLU ASN PRO LEU ARG GLY PRO ASN GLU GLU ARG PHE GLY SEQRES 13 A 289 VAL ARG PHE PRO ALA MET SER ASP ALA TYR ASP ARG ASP SEQRES 14 A 289 MET ARG GLN LYS ALA HIS SER THR TRP LYS GLN MET GLY SEQRES 15 A 289 GLU GLN ARG GLU LEU GLN GLU GLY THR TYR VAL MET LEU SEQRES 16 A 289 GLY GLY PRO ASN PHE GLU THR VAL ALA GLU CYS ARG LEU SEQRES 17 A 289 LEU ARG ASN LEU GLY ALA ASP ALA VAL GLY MET SER THR SEQRES 18 A 289 VAL PRO GLU VAL ILE VAL ALA ARG HIS CYS GLY LEU ARG SEQRES 19 A 289 VAL PHE GLY PHE SER LEU ILE THR ASN LYS VAL ILE MET SEQRES 20 A 289 ASP TYR GLU SER GLN GLY LYS ALA ASN HIS GLU GLU VAL SEQRES 21 A 289 LEU GLU ALA GLY LYS GLN ALA ALA GLN LYS LEU GLU GLN SEQRES 22 A 289 PHE VAL SER LEU LEU MET ALA SER ILE PRO VAL SER GLY SEQRES 23 A 289 HIS THR GLY HET MG A 290 1 HET ZN A 291 1 HET 144 A 292 8 HET P1D A 293 25 HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM 144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM HETNAM P1D ((2S,3AS,4R,6S)-4-(HYDROXYMETHYL)-6-(4-OXO-4,5-DIHYDRO- HETNAM 2 P1D 3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-TETRAHYDROFURO[3,4- HETNAM 3 P1D D][1,3]DIOXOL-2-YL)METHYLPHOSPHONIC ACID HETSYN P1D 9-DEAZAINOSINE-2',3'-O-ETHYLIDENEPHOSPHONATE FORMUL 2 MG MG 2+ FORMUL 3 ZN ZN 2+ FORMUL 4 144 C4 H12 N O3 1+ FORMUL 5 P1D C13 H16 N3 O8 P FORMUL 6 HOH *258(H2 O) HELIX 1 1 THR A 6 THR A 21 1 16 HELIX 2 2 LEU A 35 LEU A 42 5 8 HELIX 3 3 SER A 51 ILE A 53 5 3 HELIX 4 4 HIS A 86 GLY A 90 5 5 HELIX 5 5 PRO A 92 THR A 97 1 6 HELIX 6 6 THR A 97 GLY A 107 1 11 HELIX 7 7 LEU A 138 SER A 142 1 5 HELIX 8 8 ASP A 167 GLY A 182 1 16 HELIX 9 9 THR A 202 LEU A 212 1 11 HELIX 10 10 THR A 221 CYS A 231 1 11 HELIX 11 11 ASN A 256 MET A 279 1 24 HELIX 12 12 ALA A 280 ILE A 282 5 3 SHEET 1 A10 THR A 43 ASP A 49 0 SHEET 2 A10 ARG A 67 LEU A 73 -1 O LEU A 68 N PHE A 48 SHEET 3 A10 ARG A 76 GLN A 82 -1 O CYS A 78 N GLY A 71 SHEET 4 A10 VAL A 27 CYS A 31 1 N VAL A 29 O MET A 81 SHEET 5 A10 THR A 110 GLY A 119 1 O VAL A 112 N ALA A 28 SHEET 6 A10 ARG A 234 LYS A 244 1 O ASN A 243 N GLY A 119 SHEET 7 A10 ILE A 129 ASN A 137 -1 N MET A 130 O SER A 239 SHEET 8 A10 GLN A 188 MET A 194 1 O GLN A 188 N LEU A 131 SHEET 9 A10 ALA A 216 GLY A 218 1 O ALA A 216 N VAL A 193 SHEET 10 A10 THR A 110 GLY A 119 -1 N GLY A 118 O VAL A 217 LINK MG MG A 290 O HOH A2003 1555 1555 2.32 LINK MG MG A 290 O HOH A2000 1555 1555 2.30 LINK MG MG A 290 O HOH A2002 1555 1555 2.28 LINK MG MG A 290 O HOH A2001 1555 1555 2.22 LINK MG MG A 290 O HOH A2007 1555 1555 2.31 LINK ZN ZN A 291 NE2 HIS A 20 1555 1555 2.05 LINK ZN ZN A 291 NE2 HIS A 20 1555 6456 2.26 LINK ZN ZN A 291 NE2 HIS A 20 1555 12565 2.27 CISPEP 1 GLY A 197 PRO A 198 0 0.45 SITE 1 AC1 5 HOH A2000 HOH A2001 HOH A2002 HOH A2003 SITE 2 AC1 5 HOH A2007 SITE 1 AC2 1 HIS A 20 SITE 1 AC3 5 GLU A 52 HOH A2014 HOH A2040 HOH A2101 SITE 2 AC3 5 HOH A2152 SITE 1 AC4 19 SER A 33 ARG A 84 HIS A 86 TYR A 88 SITE 2 AC4 19 ASN A 115 ALA A 116 GLY A 118 PHE A 200 SITE 3 AC4 19 GLU A 201 MET A 219 SER A 220 THR A 242 SITE 4 AC4 19 ASN A 243 HIS A 257 VAL A 260 HOH A2004 SITE 5 AC4 19 HOH A2058 HOH A2080 HOH A2092 CRYST1 93.243 93.243 93.243 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010725 0.00000 MASTER 391 0 4 12 10 0 10 6 0 0 0 23 END