HEADER TRANSFERASE 21-JUL-05 2AE9 TITLE SOLUTION STRUCTURE OF THE THETA SUBUNIT OF DNA POLYMERASE TITLE 2 III FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE III, THETA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: HOLE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALL HELICAL, 3 HELICES, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR G.A.MUELLER,T.W.KIRBY,E.F.DEROSE,D.LI,R.M.SCHAAPER, AUTHOR 2 R.E.LONDON REVDAT 2 24-FEB-09 2AE9 1 VERSN REVDAT 1 18-OCT-05 2AE9 0 JRNL AUTH G.A.MUELLER,T.W.KIRBY,E.F.DEROSE,D.LI,R.M.SCHAAPER, JRNL AUTH 2 R.E.LONDON JRNL TITL NUCLEAR MAGNETIC RESONANCE SOLUTION STRUCTURE OF JRNL TITL 2 THE ESCHERICHIA COLI DNA POLYMERASE III {THETA} JRNL TITL 3 SUBUNIT. JRNL REF J.BACTERIOL. V. 187 7081 2005 JRNL REFN ISSN 0021-9193 JRNL PMID 16199579 JRNL DOI 10.1128/JB.187.20.7081-7089.2005 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, ARIA 1.2 REMARK 3 AUTHORS : BRUNGER (CNS), NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AE9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB033788. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 600 UM THETA U-15N,13C; 10 MM REMARK 210 NAPI PH 6.5 10 M EDTA, 5MM REMARK 210 NAN3; 600 UM THETA U-15N,13C; REMARK 210 10 MM NAPI PH 6.5 10 M EDTA, REMARK 210 5MM NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1.C, NMRPIPE 2005, REMARK 210 NMRVIEW 5.0.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 4 TYR A 71 CE1 TYR A 71 CZ -0.115 REMARK 500 4 TYR A 71 CZ TYR A 71 CE2 0.111 REMARK 500 5 TYR A 31 CE1 TYR A 31 CZ -0.089 REMARK 500 5 TYR A 31 CZ TYR A 31 CE2 0.087 REMARK 500 5 TYR A 71 CE1 TYR A 71 CZ -0.119 REMARK 500 5 TYR A 71 CZ TYR A 71 CE2 0.143 REMARK 500 6 TYR A 31 CZ TYR A 31 CE2 0.091 REMARK 500 7 TYR A 71 CE1 TYR A 71 CZ -0.100 REMARK 500 7 TYR A 71 CZ TYR A 71 CE2 0.138 REMARK 500 8 TYR A 71 CE1 TYR A 71 CZ -0.100 REMARK 500 8 TYR A 71 CZ TYR A 71 CE2 0.125 REMARK 500 9 TYR A 31 CE1 TYR A 31 CZ -0.093 REMARK 500 9 TYR A 31 CZ TYR A 31 CE2 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 -62.62 -126.97 REMARK 500 1 LEU A 5 -77.37 63.85 REMARK 500 1 LYS A 7 34.35 -141.46 REMARK 500 1 ASN A 32 9.98 -164.91 REMARK 500 1 MET A 33 117.33 -168.49 REMARK 500 1 PRO A 34 78.90 -62.49 REMARK 500 1 LEU A 66 -154.34 56.20 REMARK 500 1 SER A 67 160.69 -48.40 REMARK 500 1 ARG A 68 -64.79 77.48 REMARK 500 1 TYR A 71 113.20 78.26 REMARK 500 2 LEU A 2 -78.56 -113.27 REMARK 500 2 LYS A 3 19.95 58.73 REMARK 500 2 ASN A 32 89.31 108.85 REMARK 500 2 PRO A 34 44.29 -68.96 REMARK 500 2 LEU A 66 -156.91 -82.12 REMARK 500 2 SER A 67 -109.23 54.50 REMARK 500 2 TYR A 71 -85.78 -107.23 REMARK 500 2 PRO A 73 -76.56 -68.27 REMARK 500 3 LEU A 2 -174.61 66.03 REMARK 500 3 LYS A 3 78.71 57.92 REMARK 500 3 LYS A 7 -84.21 -81.78 REMARK 500 3 ASP A 9 36.74 -90.86 REMARK 500 3 ASN A 32 16.99 -179.75 REMARK 500 3 SER A 67 70.84 -68.74 REMARK 500 3 ARG A 68 -106.67 45.00 REMARK 500 3 TYR A 71 -34.61 81.37 REMARK 500 3 PRO A 73 25.07 -79.56 REMARK 500 4 ASN A 4 134.85 72.56 REMARK 500 4 LYS A 7 94.08 -68.71 REMARK 500 4 LEU A 8 -91.81 -114.13 REMARK 500 4 GLN A 10 -5.49 91.39 REMARK 500 4 ASN A 32 41.08 -165.85 REMARK 500 4 MET A 33 -68.74 26.28 REMARK 500 4 PRO A 34 -27.31 -38.67 REMARK 500 4 LEU A 48 53.75 -111.06 REMARK 500 4 LEU A 66 -82.39 -55.24 REMARK 500 4 LYS A 74 107.71 67.55 REMARK 500 5 LEU A 2 -69.60 -170.58 REMARK 500 5 LEU A 5 79.60 40.77 REMARK 500 5 GLN A 10 -9.80 179.82 REMARK 500 5 ASN A 32 93.17 108.02 REMARK 500 5 PRO A 34 22.05 -64.54 REMARK 500 5 LEU A 48 41.33 -107.60 REMARK 500 5 LEU A 66 -141.54 -92.43 REMARK 500 5 PRO A 70 46.69 -75.77 REMARK 500 6 LEU A 2 -71.28 -124.33 REMARK 500 6 LYS A 3 -72.58 -131.19 REMARK 500 6 LEU A 5 90.83 -65.55 REMARK 500 6 LEU A 8 100.23 67.85 REMARK 500 6 ASP A 9 35.79 -89.30 REMARK 500 6 ASN A 32 26.44 -159.15 REMARK 500 6 MET A 33 -82.69 31.81 REMARK 500 6 PRO A 34 107.94 -44.30 REMARK 500 6 LEU A 66 -82.49 -58.74 REMARK 500 6 ARG A 68 -136.65 46.53 REMARK 500 6 PRO A 70 -151.11 -89.02 REMARK 500 6 TYR A 71 126.09 80.30 REMARK 500 7 LYS A 3 -78.91 -107.04 REMARK 500 7 ASN A 4 79.94 -158.10 REMARK 500 7 LEU A 8 18.97 -154.58 REMARK 500 7 ASP A 9 35.52 -93.70 REMARK 500 7 ASN A 32 27.56 173.88 REMARK 500 7 PRO A 34 41.43 -71.11 REMARK 500 7 LEU A 66 -143.57 -102.79 REMARK 500 7 SER A 67 -132.46 -159.32 REMARK 500 7 ARG A 68 -96.34 76.24 REMARK 500 7 TYR A 71 -51.52 72.91 REMARK 500 8 LYS A 7 -162.56 63.46 REMARK 500 8 LEU A 8 -80.79 67.42 REMARK 500 8 ASN A 32 78.12 169.76 REMARK 500 8 MET A 33 138.97 -174.23 REMARK 500 8 ASN A 65 40.64 -73.32 REMARK 500 8 LEU A 66 -160.71 -61.59 REMARK 500 8 SER A 67 -86.24 80.13 REMARK 500 8 ARG A 68 14.13 -140.93 REMARK 500 8 PRO A 73 -166.34 -76.70 REMARK 500 9 LYS A 3 16.93 -140.10 REMARK 500 9 ALA A 6 -153.01 -77.73 REMARK 500 9 LYS A 7 22.84 -73.48 REMARK 500 9 ASP A 9 37.72 -94.64 REMARK 500 9 GLN A 10 2.27 83.99 REMARK 500 9 ASN A 32 27.56 -163.92 REMARK 500 9 MET A 33 139.90 -172.27 REMARK 500 9 PRO A 34 45.87 -69.86 REMARK 500 9 LEU A 66 -105.33 -64.45 REMARK 500 9 SER A 67 -150.27 177.04 REMARK 500 9 PRO A 70 -166.28 -109.88 REMARK 500 9 TYR A 71 123.42 78.56 REMARK 500 10 ASN A 4 -74.80 70.24 REMARK 500 10 ASN A 32 43.59 79.30 REMARK 500 10 PRO A 34 103.02 -34.98 REMARK 500 10 GLU A 43 -77.33 -94.13 REMARK 500 10 GLN A 44 110.16 -35.30 REMARK 500 10 ARG A 68 -109.12 66.13 REMARK 500 10 PRO A 70 22.20 -74.37 REMARK 500 10 TYR A 71 -124.17 -124.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 TYR A 71 0.07 SIDE_CHAIN REMARK 500 6 TYR A 31 0.08 SIDE_CHAIN REMARK 500 7 TYR A 71 0.09 SIDE_CHAIN REMARK 500 8 TYR A 71 0.07 SIDE_CHAIN REMARK 500 10 TYR A 71 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6571 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENTS DBREF 2AE9 A 1 76 UNP P0ABS8 HOLE_ECOLI 1 76 SEQRES 1 A 76 MET LEU LYS ASN LEU ALA LYS LEU ASP GLN THR GLU MET SEQRES 2 A 76 ASP LYS VAL ASN VAL ASP LEU ALA ALA ALA GLY VAL ALA SEQRES 3 A 76 PHE LYS GLU ARG TYR ASN MET PRO VAL ILE ALA GLU ALA SEQRES 4 A 76 VAL GLU ARG GLU GLN PRO GLU HIS LEU ARG SER TRP PHE SEQRES 5 A 76 ARG GLU ARG LEU ILE ALA HIS ARG LEU ALA SER VAL ASN SEQRES 6 A 76 LEU SER ARG LEU PRO TYR GLU PRO LYS LEU LYS HELIX 1 1 GLN A 10 MET A 33 1 24 HELIX 2 2 ILE A 36 GLN A 44 1 9 HELIX 3 3 PRO A 45 HIS A 47 5 3 HELIX 4 4 LEU A 48 VAL A 64 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 220 0 0 4 0 0 0 6 0 0 0 6 END