HEADER RNA BINDING PROTEIN/RNA 20-JUL-05 2AD9 TITLE SOLUTION STRUCTURE OF POLYPYRIMIDINE TRACT BINDING PROTEIN TITLE 2 RBD1 COMPLEXED WITH CUCUCU RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPYRIMIDINE TRACT-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RBD1; COMPND 5 SYNONYM: PTB, HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN I, COMPND 6 HNRNP I, 57 KDA RNA-BINDING PROTEIN PPTB-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-R(*CP*UP*CP*UP*CP*U)-3'; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTB-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS RBD, RRM, PROTEIN-RNA COMPLEX, RNA BINDING PROTEIN/RNA KEYWDS 2 COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.C.OBERSTRASS,S.D.AUWETER,M.ERAT,Y.HARGOUS,A.HENNING, AUTHOR 2 P.WENTER,L.REYMOND,S.PITSCH,D.L.BLACK,F.H.T.ALLAIN REVDAT 2 24-FEB-09 2AD9 1 VERSN REVDAT 1 04-OCT-05 2AD9 0 JRNL AUTH F.C.OBERSTRASS,S.D.AUWETER,M.ERAT,Y.HARGOUS, JRNL AUTH 2 A.HENNING,P.WENTER,L.REYMOND,B.AMIR-AHMADY, JRNL AUTH 3 S.PITSCH,D.L.BLACK,F.H.T.ALLAIN JRNL TITL STRUCTURE OF PTB BOUND TO RNA: SPECIFIC BINDING JRNL TITL 2 AND IMPLICATIONS FOR SPLICING REGULATION JRNL REF SCIENCE V. 309 2054 2005 JRNL REFN ISSN 0036-8075 JRNL PMID 16179478 JRNL DOI 10.1126/SCIENCE.1114066 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : CASE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AD9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB033760. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.00 REMARK 210 IONIC STRENGTH : 30MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM PTB RBD1 15N, 13C; REMARK 210 1.5MM CUCUCU-RNA; 20MM REMARK 210 PHOSPHATE BUFFER; 10MM NACL; REMARK 210 1.5MM PTB RBD1 15N; 1.5MM REMARK 210 CUCUCU-RNA; 20MM PHOSPHATE REMARK 210 BUFFER; 10MM NACL; 1.5MM PTB REMARK 210 RBD1 15N; 1.5MM CUCUCU-RNA; REMARK 210 20MM PHOSPHATE BUFFER; 10MM REMARK 210 NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 3D_13C- REMARK 210 SEPARATED_NOESY, 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, SPARKY 3.0, REMARK 210 DYANA 3.02 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 28 REMARK 465 GLY A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 HIS A 37 REMARK 465 SER A 38 REMARK 465 SER A 39 REMARK 465 GLY A 40 REMARK 465 LEU A 41 REMARK 465 VAL A 42 REMARK 465 PRO A 43 REMARK 465 ARG A 44 REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 HIS A 47 REMARK 465 MET A 48 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 C B 147 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 1 C B 149 N3 - C2 - O2 ANGL. DEV. = -5.5 DEGREES REMARK 500 1 U B 150 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 C B 149 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 1 C B 151 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 1 VAL A 60 CA - CB - CG1 ANGL. DEV. = 9.2 DEGREES REMARK 500 1 VAL A 85 CA - CB - CG1 ANGL. DEV. = 15.8 DEGREES REMARK 500 1 TYR A 127 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 2 C B 147 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 2 C B 149 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 2 U B 150 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 C B 151 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 C B 151 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 VAL A 60 CA - CB - CG1 ANGL. DEV. = 9.7 DEGREES REMARK 500 3 C B 147 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 3 C B 149 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 3 U B 150 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 C B 151 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 3 U B 152 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 VAL A 60 CA - CB - CG1 ANGL. DEV. = 9.9 DEGREES REMARK 500 3 VAL A 85 CA - CB - CG1 ANGL. DEV. = 9.3 DEGREES REMARK 500 4 C B 147 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 4 C B 149 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 4 U B 150 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 4 C B 151 N3 - C2 - O2 ANGL. DEV. = -5.0 DEGREES REMARK 500 4 U B 152 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 4 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 4 VAL A 60 CA - CB - CG1 ANGL. DEV. = 9.2 DEGREES REMARK 500 5 C B 149 N3 - C2 - O2 ANGL. DEV. = -5.0 DEGREES REMARK 500 5 C B 151 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 5 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 5 TYR A 127 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 6 C B 147 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 6 C B 149 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 6 C B 151 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 6 U B 152 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 6 VAL A 60 CA - CB - CG1 ANGL. DEV. = 9.4 DEGREES REMARK 500 6 TYR A 127 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 7 C B 149 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 7 U B 150 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 7 C B 151 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 7 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 7 VAL A 60 CA - CB - CG1 ANGL. DEV. = 10.3 DEGREES REMARK 500 7 VAL A 85 CG1 - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 7 TYR A 127 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 8 C B 147 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 8 C B 149 N1 - C2 - O2 ANGL. DEV. = 3.6 DEGREES REMARK 500 8 C B 149 N3 - C2 - O2 ANGL. DEV. = -5.4 DEGREES REMARK 500 8 U B 150 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 8 C B 151 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 131 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 59 -7.49 -51.87 REMARK 500 1 LYS A 65 -2.92 71.39 REMARK 500 1 LEU A 66 145.72 -35.34 REMARK 500 1 ASP A 69 41.71 -161.45 REMARK 500 1 PRO A 81 -5.22 -57.10 REMARK 500 1 LYS A 84 -8.98 -152.05 REMARK 500 1 VAL A 85 109.20 27.18 REMARK 500 1 THR A 118 113.86 -6.26 REMARK 500 1 VAL A 120 108.96 59.89 REMARK 500 1 ARG A 122 -13.91 45.30 REMARK 500 1 GLU A 135 92.07 51.87 REMARK 500 2 SER A 58 -86.64 -141.29 REMARK 500 2 LYS A 65 53.95 33.49 REMARK 500 2 PRO A 81 -5.14 -59.00 REMARK 500 2 VAL A 85 89.38 28.87 REMARK 500 2 VAL A 120 73.88 39.85 REMARK 500 2 ILE A 126 -55.93 -120.30 REMARK 500 2 TYR A 127 150.46 65.36 REMARK 500 3 VAL A 56 74.01 49.84 REMARK 500 3 ILE A 68 -39.21 -164.23 REMARK 500 3 ASP A 69 -29.50 -151.69 REMARK 500 3 VAL A 70 -150.90 40.02 REMARK 500 3 PRO A 81 -5.07 -59.55 REMARK 500 3 LYS A 84 -9.99 -147.73 REMARK 500 3 VAL A 85 89.03 32.21 REMARK 500 3 THR A 118 126.14 33.92 REMARK 500 3 VAL A 120 89.38 30.02 REMARK 500 3 LEU A 121 -68.48 -104.76 REMARK 500 3 TYR A 127 141.38 61.11 REMARK 500 3 GLU A 135 145.88 74.71 REMARK 500 3 ASN A 143 -54.90 -154.33 REMARK 500 4 ASP A 50 49.17 -77.16 REMARK 500 4 ARG A 52 -8.64 -58.40 REMARK 500 4 PRO A 67 174.21 -52.02 REMARK 500 4 ASP A 69 -10.99 -142.90 REMARK 500 4 VAL A 70 -151.02 42.34 REMARK 500 4 PRO A 81 42.44 -76.21 REMARK 500 4 LYS A 92 89.01 -63.65 REMARK 500 4 THR A 118 119.29 27.56 REMARK 500 4 VAL A 120 90.97 29.85 REMARK 500 4 LEU A 121 76.44 -113.15 REMARK 500 4 ARG A 122 14.17 46.84 REMARK 500 4 PRO A 125 105.25 -44.73 REMARK 500 4 GLU A 135 84.35 69.27 REMARK 500 4 GLN A 144 86.34 -67.54 REMARK 500 5 ASP A 50 -60.02 -139.81 REMARK 500 5 SER A 51 14.18 57.48 REMARK 500 5 PRO A 67 176.43 -48.79 REMARK 500 5 ASP A 69 -11.85 -141.89 REMARK 500 5 VAL A 70 -154.48 43.00 REMARK 500 5 PRO A 81 7.14 -55.36 REMARK 500 5 LYS A 94 -95.39 -135.05 REMARK 500 5 ASN A 95 32.32 -155.88 REMARK 500 5 THR A 118 123.85 37.33 REMARK 500 5 VAL A 120 99.33 42.40 REMARK 500 5 LEU A 121 -59.50 -135.30 REMARK 500 5 GLU A 135 115.67 62.02 REMARK 500 6 ALA A 54 6.65 54.78 REMARK 500 6 VAL A 56 80.45 58.82 REMARK 500 6 PRO A 67 175.61 -58.68 REMARK 500 6 ASP A 69 32.34 -154.91 REMARK 500 6 PRO A 81 -5.18 -57.74 REMARK 500 6 THR A 118 136.47 68.96 REMARK 500 6 VAL A 120 90.97 26.57 REMARK 500 6 PRO A 125 109.10 -55.59 REMARK 500 6 GLN A 144 93.57 -69.16 REMARK 500 7 SER A 58 117.75 -161.97 REMARK 500 7 ARG A 59 -12.68 61.72 REMARK 500 7 PRO A 67 -175.82 -59.19 REMARK 500 7 ASP A 69 35.15 -155.23 REMARK 500 7 PRO A 81 4.16 -59.36 REMARK 500 7 THR A 118 141.45 69.81 REMARK 500 7 VAL A 120 101.17 50.60 REMARK 500 7 GLU A 135 108.11 64.74 REMARK 500 7 GLN A 144 -81.14 -123.68 REMARK 500 7 ALA A 145 -70.84 -74.81 REMARK 500 8 ALA A 54 6.29 53.52 REMARK 500 8 VAL A 56 78.00 50.31 REMARK 500 8 SER A 58 -156.79 -144.96 REMARK 500 8 PRO A 67 179.24 -56.14 REMARK 500 8 ASP A 69 36.86 -157.75 REMARK 500 8 PRO A 81 -0.62 -59.87 REMARK 500 8 ASN A 95 38.71 72.61 REMARK 500 8 THR A 118 121.54 38.00 REMARK 500 8 VAL A 120 99.17 50.89 REMARK 500 8 LEU A 121 -73.37 -116.33 REMARK 500 8 GLU A 135 90.39 58.55 REMARK 500 8 GLN A 144 78.24 54.63 REMARK 500 9 ASP A 50 -50.10 -141.89 REMARK 500 9 VAL A 56 76.66 47.78 REMARK 500 9 ARG A 59 -7.43 -55.82 REMARK 500 9 PRO A 67 -171.97 -51.88 REMARK 500 9 ASP A 69 -7.44 -155.51 REMARK 500 9 VAL A 70 -127.39 26.05 REMARK 500 9 PRO A 81 -4.01 -57.48 REMARK 500 9 THR A 118 125.28 43.08 REMARK 500 9 VAL A 120 102.33 53.86 REMARK 500 9 LEU A 121 -71.46 -123.59 REMARK 500 9 GLU A 135 93.05 58.28 REMARK 500 9 ASP A 139 -6.79 64.61 REMARK 500 9 SER A 140 73.13 31.91 REMARK 500 10 SER A 51 29.44 -71.69 REMARK 500 10 SER A 53 -82.22 57.31 REMARK 500 10 ALA A 54 -67.91 55.55 REMARK 500 10 ARG A 59 -8.54 61.50 REMARK 500 10 ILE A 68 -55.75 -160.54 REMARK 500 10 ASP A 69 -9.47 -145.99 REMARK 500 10 VAL A 70 -154.47 45.14 REMARK 500 10 PHE A 82 -53.62 -122.05 REMARK 500 10 LYS A 84 -7.52 -143.41 REMARK 500 10 VAL A 85 87.58 30.26 REMARK 500 10 THR A 118 121.91 28.78 REMARK 500 10 VAL A 120 85.67 28.88 REMARK 500 10 TYR A 127 151.14 62.13 REMARK 500 10 GLU A 135 167.94 61.88 REMARK 500 10 ASP A 139 -59.49 -126.64 REMARK 500 10 ASN A 143 -38.91 -135.75 REMARK 500 11 ALA A 54 -72.32 -114.23 REMARK 500 11 VAL A 56 72.15 45.49 REMARK 500 11 SER A 58 -157.09 -145.77 REMARK 500 11 ARG A 59 -9.21 -55.11 REMARK 500 11 ILE A 68 -53.66 -171.60 REMARK 500 11 ASP A 69 -10.13 -147.27 REMARK 500 11 VAL A 70 -136.64 40.47 REMARK 500 11 PRO A 81 -4.03 -56.61 REMARK 500 11 LYS A 84 -13.79 -150.96 REMARK 500 11 VAL A 85 171.73 29.49 REMARK 500 11 THR A 118 115.91 -2.51 REMARK 500 11 VAL A 120 104.03 60.90 REMARK 500 11 LEU A 136 -62.47 -140.07 REMARK 500 11 LYS A 137 69.73 28.37 REMARK 500 11 SER A 140 35.94 -73.72 REMARK 500 12 VAL A 56 84.80 51.75 REMARK 500 12 SER A 58 107.49 -4.66 REMARK 500 12 ARG A 59 -6.53 81.50 REMARK 500 12 PRO A 67 -169.88 -52.56 REMARK 500 12 VAL A 70 -125.46 30.88 REMARK 500 12 PRO A 81 -6.18 -56.54 REMARK 500 12 THR A 118 125.90 45.68 REMARK 500 12 VAL A 120 92.25 30.11 REMARK 500 12 LYS A 134 152.65 79.15 REMARK 500 12 GLU A 135 95.59 36.29 REMARK 500 13 ARG A 52 -62.94 -138.07 REMARK 500 13 ALA A 54 -63.64 -134.77 REMARK 500 13 VAL A 56 72.19 46.19 REMARK 500 13 SER A 58 -84.83 -140.35 REMARK 500 13 ILE A 68 -41.87 -159.73 REMARK 500 13 ASP A 69 -11.48 -154.21 REMARK 500 13 VAL A 70 -121.88 31.29 REMARK 500 13 PRO A 81 1.15 -60.25 REMARK 500 13 LYS A 84 -12.98 -144.49 REMARK 500 13 VAL A 85 79.71 45.63 REMARK 500 13 THR A 118 112.71 12.09 REMARK 500 13 VAL A 120 99.98 64.29 REMARK 500 13 LEU A 121 -75.30 -70.61 REMARK 500 13 LYS A 134 9.07 48.94 REMARK 500 13 PRO A 142 -177.20 -65.48 REMARK 500 13 ASN A 143 74.10 -65.59 REMARK 500 13 ALA A 145 -39.63 -141.82 REMARK 500 14 SER A 51 -8.76 -142.41 REMARK 500 14 VAL A 56 69.48 35.15 REMARK 500 14 SER A 58 -82.33 -134.88 REMARK 500 14 PRO A 67 173.75 -51.72 REMARK 500 14 ASP A 69 -10.59 -140.01 REMARK 500 14 VAL A 70 -139.34 38.98 REMARK 500 14 PRO A 81 39.52 -75.20 REMARK 500 14 VAL A 120 99.37 58.36 REMARK 500 15 VAL A 56 72.43 -161.21 REMARK 500 15 PRO A 57 -144.56 -93.50 REMARK 500 15 PRO A 67 172.29 -54.41 REMARK 500 15 ASP A 69 12.17 -144.97 REMARK 500 15 THR A 118 135.04 70.89 REMARK 500 15 VAL A 120 89.12 36.37 REMARK 500 15 LEU A 121 -66.09 -100.05 REMARK 500 15 GLU A 135 -174.97 61.28 REMARK 500 16 VAL A 56 69.79 -150.66 REMARK 500 16 SER A 58 -159.45 -154.64 REMARK 500 16 LYS A 65 17.94 58.64 REMARK 500 16 ILE A 68 -52.02 -163.64 REMARK 500 16 ASP A 69 -11.31 -146.30 REMARK 500 16 VAL A 70 -145.33 42.40 REMARK 500 16 PRO A 81 -2.42 -59.16 REMARK 500 16 LYS A 92 105.98 -56.21 REMARK 500 16 THR A 118 114.57 4.09 REMARK 500 16 VAL A 120 112.47 62.07 REMARK 500 16 ARG A 122 -15.68 48.39 REMARK 500 16 GLU A 135 99.40 66.04 REMARK 500 16 THR A 138 81.82 34.17 REMARK 500 17 SER A 53 177.47 64.00 REMARK 500 17 ARG A 59 -28.78 59.92 REMARK 500 17 PRO A 67 -175.37 -59.52 REMARK 500 17 ASP A 69 37.44 -156.37 REMARK 500 17 PRO A 81 41.88 -77.72 REMARK 500 17 VAL A 85 82.66 30.44 REMARK 500 17 LYS A 92 98.62 -64.54 REMARK 500 17 THR A 118 129.36 54.88 REMARK 500 17 VAL A 120 89.79 38.87 REMARK 500 17 LYS A 134 109.51 58.82 REMARK 500 17 GLU A 135 110.26 60.28 REMARK 500 17 THR A 138 -75.95 -98.37 REMARK 500 18 SER A 51 99.14 -68.51 REMARK 500 18 ARG A 52 -49.36 -130.82 REMARK 500 18 ALA A 54 -87.69 -140.43 REMARK 500 18 VAL A 56 72.07 53.94 REMARK 500 18 SER A 58 -75.52 -156.27 REMARK 500 18 ILE A 68 -50.36 -153.05 REMARK 500 18 ASP A 69 -5.99 -151.52 REMARK 500 18 VAL A 70 -146.65 43.80 REMARK 500 18 PRO A 81 -4.63 -58.62 REMARK 500 18 THR A 118 114.36 -2.25 REMARK 500 18 VAL A 120 107.95 61.05 REMARK 500 18 GLU A 135 167.45 162.41 REMARK 500 18 ALA A 145 -159.42 -157.75 REMARK 500 19 SER A 58 -87.74 55.98 REMARK 500 19 ILE A 68 -42.44 -153.74 REMARK 500 19 ASP A 69 -7.49 -153.30 REMARK 500 19 VAL A 70 -122.21 34.27 REMARK 500 19 PRO A 81 -2.51 -59.60 REMARK 500 19 LYS A 84 -15.73 -142.84 REMARK 500 19 VAL A 85 81.90 34.60 REMARK 500 19 THR A 118 113.67 11.52 REMARK 500 19 VAL A 120 110.19 61.08 REMARK 500 19 ARG A 122 -13.19 46.61 REMARK 500 19 GLU A 135 93.71 45.93 REMARK 500 19 LEU A 136 100.34 -56.09 REMARK 500 20 SER A 53 -80.01 -123.99 REMARK 500 20 VAL A 56 74.51 48.63 REMARK 500 20 SER A 58 -157.79 -152.48 REMARK 500 20 LYS A 65 11.62 52.71 REMARK 500 20 PRO A 67 173.06 -51.95 REMARK 500 20 ASP A 69 34.86 -156.36 REMARK 500 20 PRO A 81 -3.52 -57.51 REMARK 500 20 THR A 118 113.35 1.53 REMARK 500 20 VAL A 120 105.05 62.46 REMARK 500 20 TYR A 127 110.07 77.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 84 VAL A 85 1 -147.21 REMARK 500 VAL A 117 THR A 118 1 -129.13 REMARK 500 VAL A 120 LEU A 121 2 -121.64 REMARK 500 ILE A 128 GLN A 129 2 149.95 REMARK 500 VAL A 56 PRO A 57 3 -149.79 REMARK 500 VAL A 117 THR A 118 3 -139.05 REMARK 500 VAL A 120 LEU A 121 3 -138.37 REMARK 500 VAL A 117 THR A 118 4 -139.60 REMARK 500 VAL A 120 LEU A 121 4 -134.59 REMARK 500 VAL A 117 THR A 118 5 -145.86 REMARK 500 VAL A 120 LEU A 121 5 -137.38 REMARK 500 VAL A 56 PRO A 57 6 -148.45 REMARK 500 SER A 116 VAL A 117 6 -144.98 REMARK 500 VAL A 120 LEU A 121 6 -126.08 REMARK 500 SER A 116 VAL A 117 7 -143.40 REMARK 500 VAL A 56 PRO A 57 8 -144.95 REMARK 500 VAL A 117 THR A 118 8 -147.97 REMARK 500 VAL A 120 LEU A 121 8 -146.15 REMARK 500 VAL A 56 PRO A 57 9 -147.46 REMARK 500 LEU A 66 PRO A 67 9 147.79 REMARK 500 VAL A 117 THR A 118 9 -148.40 REMARK 500 VAL A 120 LEU A 121 9 -147.29 REMARK 500 VAL A 117 THR A 118 10 -138.32 REMARK 500 VAL A 120 LEU A 121 10 -121.13 REMARK 500 LEU A 121 ARG A 122 10 148.05 REMARK 500 LYS A 84 VAL A 85 11 -127.58 REMARK 500 VAL A 117 THR A 118 11 -125.88 REMARK 500 ILE A 128 GLN A 129 11 148.00 REMARK 500 VAL A 56 PRO A 57 12 -149.81 REMARK 500 VAL A 120 LEU A 121 12 -131.50 REMARK 500 ILE A 128 GLN A 129 12 145.93 REMARK 500 HIS A 133 LYS A 134 12 -149.15 REMARK 500 SER A 116 VAL A 117 13 -149.62 REMARK 500 VAL A 117 THR A 118 13 -137.86 REMARK 500 VAL A 56 PRO A 57 14 -138.73 REMARK 500 VAL A 117 THR A 118 14 129.07 REMARK 500 SER A 116 VAL A 117 15 -144.16 REMARK 500 VAL A 120 LEU A 121 15 -134.51 REMARK 500 VAL A 117 THR A 118 16 -134.71 REMARK 500 LEU A 66 PRO A 67 17 147.91 REMARK 500 VAL A 120 LEU A 121 17 -132.47 REMARK 500 VAL A 117 THR A 118 18 -131.54 REMARK 500 ARG A 122 GLY A 123 18 -148.06 REMARK 500 VAL A 117 THR A 118 19 -133.43 REMARK 500 VAL A 117 THR A 118 20 -124.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 59 0.11 SIDE_CHAIN REMARK 500 1 TYR A 114 0.11 SIDE_CHAIN REMARK 500 2 U B 148 0.07 SIDE_CHAIN REMARK 500 2 TYR A 114 0.09 SIDE_CHAIN REMARK 500 3 TYR A 114 0.09 SIDE_CHAIN REMARK 500 4 TYR A 114 0.09 SIDE_CHAIN REMARK 500 5 TYR A 114 0.12 SIDE_CHAIN REMARK 500 6 U B 148 0.09 SIDE_CHAIN REMARK 500 6 C B 151 0.06 SIDE_CHAIN REMARK 500 7 ARG A 59 0.09 SIDE_CHAIN REMARK 500 7 ARG A 64 0.08 SIDE_CHAIN REMARK 500 9 U B 148 0.09 SIDE_CHAIN REMARK 500 9 ARG A 59 0.08 SIDE_CHAIN REMARK 500 10 U B 148 0.10 SIDE_CHAIN REMARK 500 10 TYR A 114 0.10 SIDE_CHAIN REMARK 500 11 U B 148 0.08 SIDE_CHAIN REMARK 500 11 TYR A 114 0.11 SIDE_CHAIN REMARK 500 12 U B 148 0.07 SIDE_CHAIN REMARK 500 12 C B 149 0.07 SIDE_CHAIN REMARK 500 12 ARG A 122 0.11 SIDE_CHAIN REMARK 500 13 U B 148 0.09 SIDE_CHAIN REMARK 500 13 ARG A 59 0.09 SIDE_CHAIN REMARK 500 14 U B 148 0.08 SIDE_CHAIN REMARK 500 14 TYR A 114 0.07 SIDE_CHAIN REMARK 500 15 U B 148 0.08 SIDE_CHAIN REMARK 500 15 C B 149 0.07 SIDE_CHAIN REMARK 500 16 ARG A 59 0.13 SIDE_CHAIN REMARK 500 16 TYR A 114 0.11 SIDE_CHAIN REMARK 500 17 U B 148 0.08 SIDE_CHAIN REMARK 500 18 TYR A 114 0.08 SIDE_CHAIN REMARK 500 19 U B 148 0.08 SIDE_CHAIN REMARK 500 19 ARG A 59 0.08 SIDE_CHAIN REMARK 500 19 ARG A 64 0.10 SIDE_CHAIN REMARK 500 19 TYR A 114 0.09 SIDE_CHAIN REMARK 500 20 U B 148 0.08 SIDE_CHAIN REMARK 500 20 TYR A 114 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ADB RELATED DB: PDB REMARK 900 THE SAME PROTEIN RBD2 COMPLEXED WITH CUCUCU RNA REMARK 900 RELATED ID: 2ADC RELATED DB: PDB REMARK 900 THE SAME PROTEIN RBD34 COMPLEXED WITH CUCUCU RNA DBREF 2AD9 A 49 146 UNP P26599 PTBP1_HUMAN 49 146 DBREF 2AD9 B 147 152 PDB 2AD9 2AD9 147 152 SEQADV 2AD9 MET A 28 UNP P26599 EXPRESSION TAG SEQADV 2AD9 GLY A 29 UNP P26599 EXPRESSION TAG SEQADV 2AD9 SER A 30 UNP P26599 EXPRESSION TAG SEQADV 2AD9 SER A 31 UNP P26599 EXPRESSION TAG SEQADV 2AD9 HIS A 32 UNP P26599 EXPRESSION TAG SEQADV 2AD9 HIS A 33 UNP P26599 EXPRESSION TAG SEQADV 2AD9 HIS A 34 UNP P26599 EXPRESSION TAG SEQADV 2AD9 HIS A 35 UNP P26599 EXPRESSION TAG SEQADV 2AD9 HIS A 36 UNP P26599 EXPRESSION TAG SEQADV 2AD9 HIS A 37 UNP P26599 EXPRESSION TAG SEQADV 2AD9 SER A 38 UNP P26599 EXPRESSION TAG SEQADV 2AD9 SER A 39 UNP P26599 EXPRESSION TAG SEQADV 2AD9 GLY A 40 UNP P26599 EXPRESSION TAG SEQADV 2AD9 LEU A 41 UNP P26599 EXPRESSION TAG SEQADV 2AD9 VAL A 42 UNP P26599 EXPRESSION TAG SEQADV 2AD9 PRO A 43 UNP P26599 EXPRESSION TAG SEQADV 2AD9 ARG A 44 UNP P26599 EXPRESSION TAG SEQADV 2AD9 GLY A 45 UNP P26599 EXPRESSION TAG SEQADV 2AD9 SER A 46 UNP P26599 EXPRESSION TAG SEQADV 2AD9 HIS A 47 UNP P26599 EXPRESSION TAG SEQADV 2AD9 MET A 48 UNP P26599 EXPRESSION TAG SEQRES 1 A 119 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 119 LEU VAL PRO ARG GLY SER HIS MET GLY ASP SER ARG SER SEQRES 3 A 119 ALA GLY VAL PRO SER ARG VAL ILE HIS ILE ARG LYS LEU SEQRES 4 A 119 PRO ILE ASP VAL THR GLU GLY GLU VAL ILE SER LEU GLY SEQRES 5 A 119 LEU PRO PHE GLY LYS VAL THR ASN LEU LEU MET LEU LYS SEQRES 6 A 119 GLY LYS ASN GLN ALA PHE ILE GLU MET ASN THR GLU GLU SEQRES 7 A 119 ALA ALA ASN THR MET VAL ASN TYR TYR THR SER VAL THR SEQRES 8 A 119 PRO VAL LEU ARG GLY GLN PRO ILE TYR ILE GLN PHE SER SEQRES 9 A 119 ASN HIS LYS GLU LEU LYS THR ASP SER SER PRO ASN GLN SEQRES 10 A 119 ALA ARG SEQRES 1 B 6 C U C U C U HELIX 1 1 THR A 71 LEU A 80 1 10 HELIX 2 2 LYS A 92 ASN A 95 5 4 HELIX 3 3 THR A 103 THR A 118 1 16 SHEET 1 A 4 ASN A 87 LEU A 91 0 SHEET 2 A 4 GLN A 96 GLU A 100 -1 O GLU A 100 N ASN A 87 SHEET 3 A 4 VAL A 60 ARG A 64 -1 N ILE A 61 O ILE A 99 SHEET 4 A 4 TYR A 127 PHE A 130 -1 O GLN A 129 N HIS A 62 CISPEP 1 SER A 53 ALA A 54 4 -0.05 CISPEP 2 LYS A 92 GLY A 93 5 4.10 CISPEP 3 GLY A 49 ASP A 50 9 -0.79 CISPEP 4 ASN A 143 GLN A 144 19 -2.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 521 0 0 3 4 0 0 6 0 0 0 11 END