HEADER OXIDOREDUCTASE 16-JUL-05 2ABV TITLE HUMAN 5-LIPOXYGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARACHIDONATE 5-LIPOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5-LIPOXYGENASE, 5-LO; COMPND 5 EC: 1.13.11.34 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS HUMAN 5-LIPOXYGENASE EXPDTA THEORETICAL MODEL AUTHOR P.ARUL PRAKASAM,P.P.MATHUR,E.SELVAKUMAR,S.LAKSHMINARAYANAN, AUTHOR 2 R.BALAMURUGAN,K.EZHILMARAN REVDAT 1 02-AUG-05 2ABV 0 JRNL AUTH P.ARUL PRAKASAM,P.P.MATHUR,E.SELVAKUMAR, JRNL AUTH 2 S.LAKSHMINARAYANAN,R.BALAMURUGAN,K.EZHILMARAN JRNL TITL STRUCTURE OF HUMAN 5-LIPOXYGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELLER 7V7 REMARK 3 AUTHORS : A. SALI & T.L. BLUNDELL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ABV COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-2005. REMARK 100 THE RCSB ID CODE IS RCSB033722. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS STRUCTURE WAS PRODUCED BY MODELLER7V7 AND REMARK 220 SUBJECTED TO 1 NANOSECOND MOLECULAR DYNAMICS SIMULATION REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 178 CA VAL A 178 C 0.166 REMARK 500 LEU A 179 N LEU A 179 CA 0.153 REMARK 500 VAL A 178 C LEU A 179 N 0.199 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 148 CB - CG - OD1 ANGL. DEV. =-76.5 DEGREES REMARK 500 ASN A 148 CB - CG - ND2 ANGL. DEV. =-22.9 DEGREES REMARK 500 LEU A 179 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 GLN A 235 CG - CD - OE1 ANGL. DEV. =-75.5 DEGREES REMARK 500 GLN A 235 CG - CD - NE2 ANGL. DEV. =-23.4 DEGREES REMARK 500 PHE A 469 C - N - CA ANGL. DEV. =-26.5 DEGREES REMARK 500 GLN A 557 OE1 - CD - NE2 ANGL. DEV. = 18.7 DEGREES REMARK 500 GLN A 557 CG - CD - OE1 ANGL. DEV. =-69.7 DEGREES REMARK 500 GLN A 557 CG - CD - NE2 ANGL. DEV. =-26.2 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 35 -137.06 86.37 REMARK 500 ALA A 116 152.88 88.50 REMARK 500 ALA A 157 155.49 109.29 REMARK 500 SER A 199 168.05 89.06 REMARK 500 VAL A 262 -168.15 124.60 REMARK 500 ASN A 318 27.18 118.05 REMARK 500 ARG A 401 -152.56 14.58 REMARK 500 SER A 461 -29.49 127.82 REMARK 500 ARG A 518 -48.68 74.39 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ABT RELATED DB: PDB REMARK 900 HUMAN 15-LIPOXYGENASE REMARK 900 RELATED ID: 2ABU RELATED DB: PDB REMARK 900 HUMAN 12-LIPOXYGENASE DBREF 2ABV A 1 673 UNP P09917 LOX5_HUMAN 1 673 SEQRES 1 A 673 PRO SER TYR THR VAL THR VAL ALA THR GLY SER GLN TRP SEQRES 2 A 673 PHE ALA GLY THR ASP ASP TYR ILE TYR LEU SER LEU VAL SEQRES 3 A 673 GLY SER ALA GLY CYS SER GLU LYS HIS LEU LEU ASP LYS SEQRES 4 A 673 PRO PHE TYR ASN ASP PHE GLU ARG GLY ALA VAL ASP SER SEQRES 5 A 673 TYR ASP VAL THR VAL ASP GLU GLU LEU GLY GLU ILE GLN SEQRES 6 A 673 LEU VAL ARG ILE GLU LYS ARG LYS TYR TRP LEU ASN ASP SEQRES 7 A 673 ASP TRP TYR LEU LYS TYR ILE THR LEU LYS THR PRO HIS SEQRES 8 A 673 GLY ASP TYR ILE GLU PHE PRO CYS TYR ARG TRP ILE THR SEQRES 9 A 673 GLY ASP VAL GLU VAL VAL LEU ARG ASP GLY ARG ALA LYS SEQRES 10 A 673 LEU ALA ARG ASP ASP GLN ILE HIS ILE LEU LYS GLN HIS SEQRES 11 A 673 ARG ARG LYS GLU LEU GLU THR ARG GLN LYS GLN TYR ARG SEQRES 12 A 673 TRP MET GLU TRP ASN PRO GLY PHE PRO LEU SER ILE ASP SEQRES 13 A 673 ALA LYS CYS HIS LYS ASP LEU PRO ARG ASP ILE GLN PHE SEQRES 14 A 673 ASP SER GLU LYS GLY VAL ASP PHE VAL LEU ASN TYR SER SEQRES 15 A 673 LYS ALA MET GLU ASN LEU PHE ILE ASN ARG PHE MET HIS SEQRES 16 A 673 MET PHE GLN SER SER TRP ASN ASP PHE ALA ASP PHE GLU SEQRES 17 A 673 LYS ILE PHE VAL LYS ILE SER ASN THR ILE SER GLU ARG SEQRES 18 A 673 VAL MET ASN HIS TRP GLN GLU ASP LEU MET PHE GLY TYR SEQRES 19 A 673 GLN PHE LEU ASN GLY CYS ASN PRO VAL LEU ILE ARG ARG SEQRES 20 A 673 CYS THR GLU LEU PRO GLU LYS LEU PRO VAL THR THR GLU SEQRES 21 A 673 MET VAL GLU CYS SER LEU GLU ARG GLN LEU SER LEU GLU SEQRES 22 A 673 GLN GLU VAL GLN GLN GLY ASN ILE PHE ILE VAL ASP PHE SEQRES 23 A 673 GLU LEU LEU ASP GLY ILE ASP ALA ASN LYS THR ASP PRO SEQRES 24 A 673 CYS THR LEU GLN PHE LEU ALA ALA PRO ILE CYS LEU LEU SEQRES 25 A 673 TYR LYS ASN LEU ALA ASN LYS ILE VAL PRO ILE ALA ILE SEQRES 26 A 673 GLN LEU ASN GLN ILE PRO GLY ASP GLU ASN PRO ILE PHE SEQRES 27 A 673 LEU PRO SER ASP ALA LYS TYR ASP TRP LEU LEU ALA LYS SEQRES 28 A 673 ILE TRP VAL ARG SER SER ASP PHE HIS VAL HIS GLN THR SEQRES 29 A 673 ILE THR HIS LEU LEU ARG THR HIS LEU VAL SER GLU VAL SEQRES 30 A 673 PHE GLY ILE ALA MET TYR ARG GLN LEU PRO ALA VAL HIS SEQRES 31 A 673 PRO ILE PHE LYS LEU LEU VAL ALA HIS VAL ARG PHE THR SEQRES 32 A 673 ILE ALA ILE ASN THR LYS ALA ARG GLU GLN LEU ILE CYS SEQRES 33 A 673 GLU CYS GLY LEU PHE ASP LYS ALA ASN ALA THR GLY GLY SEQRES 34 A 673 GLY GLY HIS VAL GLN MET VAL GLN ARG ALA MET LYS ASP SEQRES 35 A 673 LEU THR TYR ALA SER LEU CYS PHE PRO GLU ALA ILE LYS SEQRES 36 A 673 ALA ARG GLY MET GLU SER LYS GLU ASP ILE PRO TYR TYR SEQRES 37 A 673 PHE TYR ARG ASP ASP GLY LEU LEU VAL TRP GLU ALA ILE SEQRES 38 A 673 ARG THR PHE THR ALA GLU VAL VAL ASP ILE TYR TYR GLU SEQRES 39 A 673 GLY ASP GLN VAL VAL GLU GLU ASP PRO GLU LEU GLN ASP SEQRES 40 A 673 PHE VAL ASN ASP VAL TYR VAL TYR GLY MET ARG GLY ARG SEQRES 41 A 673 LYS SER SER GLY PHE PRO LYS SER VAL LYS SER ARG GLU SEQRES 42 A 673 GLN LEU SER GLU TYR LEU THR VAL VAL ILE PHE THR ALA SEQRES 43 A 673 SER ALA GLN HIS ALA ALA VAL ASN PHE GLY GLN TYR ASP SEQRES 44 A 673 TRP CYS SER TRP ILE PRO ASN ALA PRO PRO THR MET ARG SEQRES 45 A 673 ALA PRO PRO PRO THR ALA LYS GLY VAL VAL THR ILE GLU SEQRES 46 A 673 GLN ILE VAL ASP THR LEU PRO ASP ARG GLY ARG SER CYS SEQRES 47 A 673 TRP HIS LEU GLY ALA VAL TRP ALA LEU SER GLN PHE GLN SEQRES 48 A 673 GLU ASN GLU LEU PHE LEU GLY MET TYR PRO GLU GLU HIS SEQRES 49 A 673 PHE ILE GLU LYS PRO VAL LYS GLU ALA MET ALA ARG PHE SEQRES 50 A 673 ARG LYS ASN LEU GLU ALA ILE VAL SER VAL ILE ALA GLU SEQRES 51 A 673 ARG ASN LYS LYS LYS GLN LEU PRO TYR TYR TYR LEU SER SEQRES 52 A 673 PRO ASP ARG ILE PRO ASN SER VAL ALA ILE HET FE2 A 674 1 HETNAM FE2 FE (II) ION FORMUL 2 FE2 FE 2+ HELIX 1 1 LEU A 127 TYR A 142 1 16 HELIX 2 2 CYS A 159 LEU A 163 5 5 HELIX 3 3 PRO A 164 GLN A 168 5 5 HELIX 4 4 ASP A 170 PHE A 177 1 8 HELIX 5 5 ASN A 180 GLU A 186 5 7 HELIX 6 6 ASP A 203 PHE A 211 5 9 HELIX 7 7 ILE A 218 TRP A 226 1 9 HELIX 8 8 GLU A 228 GLY A 239 1 12 HELIX 9 9 ARG A 268 GLY A 279 1 12 HELIX 10 10 GLU A 287 ASP A 290 5 4 HELIX 11 11 ALA A 343 ILE A 365 1 23 HELIX 12 12 THR A 371 LEU A 386 1 16 HELIX 13 13 HIS A 390 VAL A 397 1 8 HELIX 14 14 ALA A 398 ARG A 401 5 4 HELIX 15 15 PHE A 402 GLN A 413 1 12 HELIX 16 16 GLY A 419 ASN A 425 1 7 HELIX 17 17 GLY A 430 LYS A 441 1 12 HELIX 18 18 TYR A 445 LEU A 448 5 4 HELIX 19 19 CYS A 449 ARG A 457 1 9 HELIX 20 20 PHE A 469 ILE A 491 1 23 HELIX 21 21 GLY A 495 ASP A 502 1 8 HELIX 22 22 ASP A 502 VAL A 514 1 13 HELIX 23 23 SER A 531 SER A 547 1 17 HELIX 24 24 SER A 547 PHE A 555 1 9 HELIX 25 25 GLY A 556 CYS A 561 1 6 HELIX 26 26 TRP A 563 ALA A 567 5 5 HELIX 27 27 THR A 583 LEU A 591 1 9 HELIX 28 28 ASP A 593 LEU A 607 1 15 HELIX 29 29 GLU A 627 LYS A 654 1 28 SHEET 1 A 4 VAL A 50 VAL A 55 0 SHEET 2 A 4 TYR A 3 THR A 9 -1 N TYR A 3 O VAL A 55 SHEET 3 A 4 TRP A 80 LYS A 88 -1 O THR A 86 N THR A 6 SHEET 4 A 4 ILE A 95 ILE A 103 -1 O ILE A 103 N TRP A 80 SHEET 1 B 4 CYS A 31 ASP A 38 0 SHEET 2 B 4 TYR A 20 GLY A 27 -1 N LEU A 23 O LYS A 34 SHEET 3 B 4 ILE A 64 ARG A 72 -1 O GLU A 70 N TYR A 22 SHEET 4 B 4 VAL A 109 ARG A 112 -1 O LEU A 111 N VAL A 67 SHEET 1 C 2 TRP A 144 MET A 145 0 SHEET 2 C 2 SER A 154 ILE A 155 -1 O SER A 154 N MET A 145 SHEET 1 D 5 ARG A 246 ARG A 247 0 SHEET 2 D 5 ILE A 281 ASP A 285 -1 O ILE A 283 N ARG A 246 SHEET 3 D 5 ILE A 309 LYS A 314 -1 O LEU A 312 N PHE A 282 SHEET 4 D 5 ILE A 320 GLN A 326 -1 O ILE A 323 N LEU A 311 SHEET 5 D 5 ILE A 337 PHE A 338 -1 O PHE A 338 N ILE A 325 LINK FE FE2 A 674 NE2 HIS A 367 LINK FE FE2 A 674 NE2 HIS A 372 LINK FE FE2 A 674 NE2 HIS A 550 LINK FE FE2 A 674 OXT ILE A 673 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 94 0 1 29 15 0 0 6 0 0 0 52 END