HEADER RNA BINDING PROTEIN 14-JUL-05 2AB7 TITLE SOLUTION STRUCTURES AND CHARACTERIZATION OF HIV RRE IIB RNA TITLE 2 TARGETING ZINC FINGER PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZNF29G29R; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SINGLE ZINC FINGER PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21DE3 PLYS S (NOVAGEN); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32B(+)EK/LIC KEYWDS ZINC FINGER PROTEIN, BETA BETA ALPHA, RREIIB-TR, RNA KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR AUTHOR S.H.MISHRA,C.M.SHELLEY,M.K.DARBY,M.W.GERMANN REVDAT 3 24-FEB-09 2AB7 1 VERSN REVDAT 2 24-APR-07 2AB7 1 JRNL REVDAT 1 02-AUG-05 2AB7 0 JRNL AUTH S.H.MISHRA,C.M.SHELLEY,D.J.BARROW,M.K.DARBY, JRNL AUTH 2 M.W.GERMANN JRNL TITL SOLUTION STRUCTURES AND CHARACTERIZATION OF HUMAN JRNL TITL 2 IMMUNODEFICIENCY VIRUS REV RESPONSIVE ELEMENT IIB JRNL TITL 3 RNA TARGETING ZINC FINGER PROTEINS. JRNL REF BIOPOLYMERS V. 83 352 2006 JRNL REFN ISSN 0006-3525 JRNL PMID 16826557 JRNL DOI 10.1002/BIP.20565 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, AMBER 7 REMARK 3 AUTHORS : GUENTERT, P. (DYANA), CASE ET AL (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON A TOTAL OF REMARK 3 242 RESTRAINTS, 177 ARE NOE-DERIVED DISTANCE RESTRAINTS, 41 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 16 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS, 8 DISTANCE CONSTRAINTS FROM COORDINATED ZINC REMARK 3 ION. REMARK 4 REMARK 4 2AB7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB033704. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : ~ 35 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM ZNF29G29R; 10 MM REMARK 210 PHOSPHATE BUFFER PH 6.8, 2MM REMARK 210 MERCAPTOETHANOL, 200 UM SODIUM REMARK 210 AZIDE, 50 UM ZINC SULFATE, 90% REMARK 210 H2O, 10% D2O; 1.2 MM REMARK 210 ZNF29G29R; 10 MM PHOSPHATE REMARK 210 BUFFER PH *6.4, 2MM REMARK 210 MERCAPTOETHANOL, 200 UM SODIUM REMARK 210 AZIDE, 50 UM ZINC SULFATE," REMARK 210 100%" D2O; 1.2 MM ZNF29G29R REMARK 210 15N; 10 MM PHOSPHATE BUFFER PH REMARK 210 6.8, 2MM MERCAPTOETHANOL, 200 REMARK 210 UM SODIUM AZIDE, 50 UM ZINC REMARK 210 SULFATE, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY, REMARK 210 E-COSY, 13 C HSQC, 15 N HSQC, REMARK 210 HMQC NOESY, HMQC TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.5, SPARKY 3 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: 13 C HSQC DONE AT NATURAL ABUNDANCE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 7 173.06 -56.58 REMARK 500 GLU A 8 11.05 -63.35 REMARK 500 ASN A 9 -32.76 -162.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 30 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 5 SG REMARK 620 2 CYS A 5 O 77.1 REMARK 620 3 CYS A 10 SG 152.7 79.0 REMARK 620 4 HIS A 23 NE2 92.6 128.9 92.2 REMARK 620 5 HIS A 27 NE2 99.5 143.9 107.6 86.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 30 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AB3 RELATED DB: PDB REMARK 900 THIS PROTEIN HAS THE SAME SEQUENCE AS ZNF29G29R WITH THE REMARK 900 TERMINAL GLYCINE REPLACED BY AN ARGININE. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE HAS NOT BEEN DEPOSITED IN ANY DATABASE DBREF 2AB7 A 1 29 PDB 2AB7 2AB7 1 29 SEQRES 1 A 29 MET VAL TYR VAL CYS HIS PHE GLU ASN CYS GLY ARG SER SEQRES 2 A 29 PHE ASN ASP ARG ARG LYS LEU ASN ARG HIS LYS LYS ILE SEQRES 3 A 29 HIS THR ARG HET ZN A 30 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ASP A 16 LYS A 24 1 9 HELIX 2 2 LYS A 25 THR A 28 5 4 SHEET 1 A 2 TYR A 3 CYS A 5 0 SHEET 2 A 2 ARG A 12 PHE A 14 -1 O ARG A 12 N CYS A 5 LINK ZN ZN A 30 SG CYS A 5 1555 1555 2.27 LINK ZN ZN A 30 O CYS A 5 1555 1555 2.73 LINK ZN ZN A 30 SG CYS A 10 1555 1555 2.29 LINK ZN ZN A 30 NE2 HIS A 23 1555 1555 2.22 LINK ZN ZN A 30 NE2 HIS A 27 1555 1555 2.25 SITE 1 AC1 4 CYS A 5 CYS A 10 HIS A 23 HIS A 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 114 0 1 2 2 0 1 6 0 0 0 3 END