HEADER OXIDOREDUCTASE 11-JUL-05 2A9B TITLE CRYSTAL STRUCTURE OF R138Q MUTANT OF RECOMBINANT SULFITE OXIDASE AT TITLE 2 RESTING STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFITE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE DOMAIN AND C TERMINAL DIMERIZATION DOMAIN; COMPND 5 EC: 1.8.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 ORGAN: LIVER; SOURCE 6 ORGANELLE: MITOCHONDRION; SOURCE 7 CELLULAR_LOCATION: MITOCHONDRIAL INTERMEMBRANE SPACE; SOURCE 8 GENE: SUOX; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: TP1000; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PTRC99A; SOURCE 14 OTHER_DETAILS: THE GENE IS CHEMICALLY SYNTHESIZED BASED ON THE SOURCE 15 PROTEIN SEQUENCE OF SULFITE OXIDASE FROM GALLUS GALLUS KEYWDS SULFITE OXIDASE; MOLYBDOPTERIN; MOLYBDENUM; MUTANT; R160Q, R138Q, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.KARAKAS,H.L.WILSON,T.N.GRAF,S.XIANG,S.JARAMILLO-BUSQUETS, AUTHOR 2 K.V.RAJAGOPALAN,C.KISKER REVDAT 5 20-OCT-21 2A9B 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2A9B 1 VERSN REVDAT 3 24-FEB-09 2A9B 1 VERSN REVDAT 2 25-OCT-05 2A9B 1 JRNL REVDAT 1 02-AUG-05 2A9B 0 JRNL AUTH E.KARAKAS,H.L.WILSON,T.N.GRAF,S.XIANG,S.JARAMILLO-BUSQUETS, JRNL AUTH 2 K.V.RAJAGOPALAN,C.KISKER JRNL TITL STRUCTURAL INSIGHTS INTO SULFITE OXIDASE DEFICIENCY JRNL REF J.BIOL.CHEM. V. 280 33506 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16048997 JRNL DOI 10.1074/JBC.M505035200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : COPIED FROM R-FREE OF REMARK 3 REFLECTIONS OF WILD TYPE REMARK 3 CRYSTALS (PDB ENTRY 2A99) REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 947 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1354 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2869 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.70000 REMARK 3 B22 (A**2) : 1.70000 REMARK 3 B33 (A**2) : -3.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.740 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2983 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4089 ; 1.488 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 3.717 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;29.280 ;22.443 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 428 ;13.870 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2362 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1297 ; 0.220 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1993 ; 0.328 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 351 ; 0.218 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.198 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.141 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.204 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1893 ; 0.724 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3006 ; 1.310 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1257 ; 1.692 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1083 ; 2.930 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 466 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2080 0.1690 18.2620 REMARK 3 T TENSOR REMARK 3 T11: -0.0028 T22: -0.0101 REMARK 3 T33: -0.0227 T12: 0.0068 REMARK 3 T13: -0.0027 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.3235 L22: 0.1905 REMARK 3 L33: 0.2220 L12: -0.0136 REMARK 3 L13: -0.2441 L23: -0.0636 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: 0.0745 S13: -0.0788 REMARK 3 S21: -0.0008 S22: 0.0220 S23: 0.0829 REMARK 3 S31: -0.0148 S32: -0.0227 S33: 0.0376 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19275 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2A99 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MAGNESIUM CHLORIDE, MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.05450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 43.05450 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.91250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.05450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.45625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.05450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 115.36875 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.05450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.05450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.91250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 43.05450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 115.36875 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 43.05450 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.45625 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE TWO FOLD AXIS, 7_544 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.10900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2543 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2609 O HOH A 2681 2.08 REMARK 500 O HOH A 2605 O HOH A 2615 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 205 -135.84 -98.67 REMARK 500 GLN A 343 -91.05 -120.27 REMARK 500 LYS A 401 118.06 -35.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MO A1501 MO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 185 SG REMARK 620 2 MTE A 501 S1' 144.7 REMARK 620 3 MTE A 501 S2' 91.9 81.8 REMARK 620 4 HOH A2501 O 98.3 116.8 107.1 REMARK 620 5 HOH A2502 O 88.8 74.2 138.5 113.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MO A 1501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A99 RELATED DB: PDB REMARK 900 WILD TYPE ENZYME AT RESTING STATE REMARK 900 RELATED ID: 2A9A RELATED DB: PDB REMARK 900 WILD TYPE ENZYME WITH THE BOUND PRODUCT REMARK 900 RELATED ID: 2A9C RELATED DB: PDB REMARK 900 R138Q MUTANT WITH THE BOUND PRODUCT REMARK 900 RELATED ID: 2A9D RELATED DB: PDB REMARK 900 SAME PROTEIN WITH AN ARG AT RESIDUE 161 DBREF 2A9B A 95 466 UNP P07850 SUOX_CHICK 95 466 SEQADV 2A9B GLN A 138 UNP P07850 ARG 138 ENGINEERED MUTATION SEQRES 1 A 372 ASP PRO PHE ALA GLY ASP PRO PRO ARG HIS PRO GLY LEU SEQRES 2 A 372 ARG VAL ASN SER GLN LYS PRO PHE ASN ALA GLU PRO PRO SEQRES 3 A 372 ALA GLU LEU LEU ALA GLU ARG PHE LEU THR PRO ASN GLU SEQRES 4 A 372 LEU PHE PHE THR GLN ASN HIS LEU PRO VAL PRO ALA VAL SEQRES 5 A 372 GLU PRO SER SER TYR ARG LEU ARG VAL ASP GLY PRO GLY SEQRES 6 A 372 GLY GLY THR LEU SER LEU SER LEU ALA GLU LEU ARG SER SEQRES 7 A 372 ARG PHE PRO LYS HIS GLU VAL THR ALA THR LEU GLN CYS SEQRES 8 A 372 ALA GLY ASN ARG ARG SER GLU MET SER ARG VAL ARG PRO SEQRES 9 A 372 VAL LYS GLY LEU PRO TRP ASP ILE GLY ALA ILE SER THR SEQRES 10 A 372 ALA ARG TRP GLY GLY ALA ARG LEU ARG ASP VAL LEU LEU SEQRES 11 A 372 HIS ALA GLY PHE PRO GLU GLU LEU GLN GLY GLU TRP HIS SEQRES 12 A 372 VAL CYS PHE GLU GLY LEU ASP ALA ASP PRO GLY GLY ALA SEQRES 13 A 372 PRO TYR GLY ALA SER ILE PRO TYR GLY ARG ALA LEU SER SEQRES 14 A 372 PRO ALA ALA ASP VAL LEU LEU ALA TYR GLU MET ASN GLY SEQRES 15 A 372 THR GLU LEU PRO ARG ASP HIS GLY PHE PRO VAL ARG VAL SEQRES 16 A 372 VAL VAL PRO GLY VAL VAL GLY ALA ARG SER VAL LYS TRP SEQRES 17 A 372 LEU ARG ARG VAL ALA VAL SER PRO ASP GLU SER PRO SER SEQRES 18 A 372 HIS TRP GLN GLN ASN ASP TYR LYS GLY PHE SER PRO CYS SEQRES 19 A 372 VAL ASP TRP ASP THR VAL ASP TYR ARG THR ALA PRO ALA SEQRES 20 A 372 ILE GLN GLU LEU PRO VAL GLN SER ALA VAL THR GLN PRO SEQRES 21 A 372 ARG PRO GLY ALA ALA VAL PRO PRO GLY GLU LEU THR VAL SEQRES 22 A 372 LYS GLY TYR ALA TRP SER GLY GLY GLY ARG GLU VAL VAL SEQRES 23 A 372 ARG VAL ASP VAL SER LEU ASP GLY GLY ARG THR TRP LYS SEQRES 24 A 372 VAL ALA ARG LEU MET GLY ASP LYS ALA PRO PRO GLY ARG SEQRES 25 A 372 ALA TRP ALA TRP ALA LEU TRP GLU LEU THR VAL PRO VAL SEQRES 26 A 372 GLU ALA GLY THR GLU LEU GLU ILE VAL CYS LYS ALA VAL SEQRES 27 A 372 ASP SER SER TYR ASN VAL GLN PRO ASP SER VAL ALA PRO SEQRES 28 A 372 ILE TRP ASN LEU ARG GLY VAL LEU SER THR ALA TRP HIS SEQRES 29 A 372 ARG VAL ARG VAL SER VAL GLN ASP HET CL A 502 1 HET MTE A 501 24 HET MO A1501 1 HETNAM CL CHLORIDE ION HETNAM MTE PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, HETNAM 2 MTE 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA- HETNAM 3 MTE ANTHRACEN-7-YLMETHYL)ESTER HETNAM MO MOLYBDENUM ATOM FORMUL 2 CL CL 1- FORMUL 3 MTE C10 H14 N5 O6 P S2 FORMUL 4 MO MO FORMUL 5 HOH *215(H2 O) HELIX 1 1 PRO A 120 ALA A 125 1 6 HELIX 2 2 LEU A 167 PHE A 174 1 8 HELIX 3 3 ARG A 189 ARG A 195 1 7 HELIX 4 4 LEU A 219 ALA A 226 1 8 HELIX 5 5 TYR A 258 SER A 263 1 6 HELIX 6 6 PRO A 280 GLY A 284 5 5 HELIX 7 7 VAL A 295 SER A 299 5 5 HELIX 8 8 SER A 315 ASN A 320 1 6 HELIX 9 9 ASP A 335 ALA A 339 5 5 HELIX 10 10 VAL A 443 TRP A 447 5 5 SHEET 1 A 3 ARG A 108 SER A 111 0 SHEET 2 A 3 ASN A 116 GLU A 118 -1 O GLU A 118 N ARG A 108 SHEET 3 A 3 THR A 137 GLN A 138 -1 O THR A 137 N ALA A 117 SHEET 1 B 5 THR A 162 SER A 166 0 SHEET 2 B 5 ARG A 152 ASP A 156 -1 N LEU A 153 O LEU A 165 SHEET 3 B 5 LEU A 303 SER A 309 1 O ARG A 304 N ARG A 154 SHEET 4 B 5 HIS A 237 ALA A 245 -1 N CYS A 239 O ALA A 307 SHEET 5 B 5 PRO A 251 PRO A 257 -1 O ALA A 254 N PHE A 240 SHEET 1 C 4 HIS A 177 GLN A 184 0 SHEET 2 C 4 ILE A 209 ARG A 218 -1 O TRP A 214 N VAL A 179 SHEET 3 C 4 LEU A 269 MET A 274 -1 O LEU A 270 N ALA A 217 SHEET 4 C 4 THR A 277 GLU A 278 -1 O THR A 277 N MET A 274 SHEET 1 D 4 HIS A 177 GLN A 184 0 SHEET 2 D 4 ILE A 209 ARG A 218 -1 O TRP A 214 N VAL A 179 SHEET 3 D 4 LEU A 269 MET A 274 -1 O LEU A 270 N ALA A 217 SHEET 4 D 4 ARG A 288 VAL A 290 -1 O VAL A 290 N LEU A 269 SHEET 1 E 4 GLN A 348 GLN A 353 0 SHEET 2 E 4 GLY A 363 TRP A 372 -1 O LYS A 368 N THR A 352 SHEET 3 E 4 ALA A 411 VAL A 419 -1 O VAL A 417 N LEU A 365 SHEET 4 E 4 ARG A 396 MET A 398 -1 N MET A 398 O LEU A 412 SHEET 1 F 5 ALA A 359 VAL A 360 0 SHEET 2 F 5 HIS A 458 VAL A 464 1 O SER A 463 N VAL A 360 SHEET 3 F 5 GLU A 424 ASP A 433 -1 N ILE A 427 O VAL A 460 SHEET 4 F 5 VAL A 379 SER A 385 -1 N ASP A 383 O LYS A 430 SHEET 5 F 5 LYS A 393 VAL A 394 -1 O LYS A 393 N VAL A 384 LINK SG CYS A 185 MO MO A1501 1555 1555 2.47 LINK S1' MTE A 501 MO MO A1501 1555 1555 2.28 LINK S2' MTE A 501 MO MO A1501 1555 1555 2.36 LINK MO MO A1501 O HOH A2501 1555 1555 1.63 LINK MO MO A1501 O HOH A2502 1555 1555 2.17 CISPEP 1 LYS A 113 PRO A 114 0 -0.77 CISPEP 2 PHE A 285 PRO A 286 0 0.34 CISPEP 3 GLN A 353 PRO A 354 0 1.72 SITE 1 AC1 4 GLN A 138 ARG A 190 TRP A 204 HOH A2542 SITE 1 AC2 19 PHE A 135 PHE A 136 THR A 137 GLN A 138 SITE 2 AC2 19 HIS A 140 CYS A 185 ASP A 244 TYR A 252 SITE 3 AC2 19 HIS A 283 ARG A 288 GLY A 296 ALA A 297 SITE 4 AC2 19 SER A 299 VAL A 300 LYS A 301 TRP A 302 SITE 5 AC2 19 TYR A 322 MO A1501 HOH A2502 SITE 1 AC3 5 GLN A 138 CYS A 185 MTE A 501 HOH A2501 SITE 2 AC3 5 HOH A2502 CRYST1 86.109 86.109 153.825 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006501 0.00000 MASTER 356 0 3 10 25 0 8 6 0 0 0 29 END